RNA id: XM_026941358.2


Basic Information

Item Value
RNA id XM_026941358.2
length 5606
RNA type mRNA
GC content 0.44
exon number 2
gene id dsela
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 2319874 ~ 2325480 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTGCATTTCCGGTATGCACGCGCCACCTATCGACAGGAAACAACCGCACGGTTTTGAGGAAGAATCAATACCAGTAGAATAGAATTGCTATTAAAATAGCGAGCGACTAAACAGCTAATGATTTGCTTTGATAAAAAGCTGTTTAAAGAATCTCGCGTTTAATAACAGATGCATCAGTCTACAGTTACGCTGTACGTAACTTCCGGGTTTCACTCGCCATCACTCGCCATCATCCCTCTTTCTGCTGTTAGGACGGCTGTTTTGGGATTTCGCCCTTGTTTTTGGTCGTTTGAGGCAGCTAATCGTGTTCTGACACGTCTCGAGTGCAAATGCGGCTCAGGAAATGGAGGTAAAGcgatttataaagaaaaatgaagagaCTTGTTGCCGCGCATGCGCAGAACGAAATCAGATGTGATCACAGAGCTGTGGTAGGCAACAGAGAGCTGTGCACGCAAAACAGTAACGTGATCTCTCTGAGAAGCAACTTTACCGGCGCATATTTATCTTCTGCACAGGACATAACACGGTTTTTACAGACTCCATGGAGACAAGGCGTGGAAGAGATTCCCAAAGGAAAGTGAAGGACCTGTGGTGTCAAATGGAAAGGATTCAACAAGAGAGATAGGAAAGAACATGGGCATGTTTAGTCATGGATGATGCATGCATTGCAGAAGCTCTCTTTCAGAAGCAGTGTTCAGGACTGATACTGTGTCATGTTCGCATGATCTAGAATgaagaaagtcttcagaaacCTGGTGGATTGGTGGTGGTCTACCTAAAGCTGTCAATTTTAACCACAAAAACTTTTTCCTCCTTATGACTTTAGAACAGTGGATTTGATCAAGAACTTGGCAAGAACCCAAACACTCCATGTGAAATTCCTCCTTCCTGAAAGCATGATTAATCTCCTGGAATTGCCCTAGATGTGAGTAGAAATtacaagcacttttttttttctgttaaggAGGAGCGTTTTTCaaagggaaaggaaaaaaaatcccacatcTGTCTTTTAGATCATGGCCGTATGCATAGTGAAGTCTGCGCTTCTGCTGTGTCTTGTGAATTTGGGATTTTCCTTCTCTGGGATATTTGACCCCTCAGGCAAATATGGCACAGTCAGCGATCATGACGAGCGAGCTGATTTCCATACAGGCACCAACGCCACCACAGAACGAGGATTTCACATGCCATCAAACGTCCACCCCAACCTTTATTTCGACCTGACAGAAGTGCGCCGGCTGAAAAAGAAAGCTGCCAGCACGCACGGACACATATTTAAAGTTATACGAAATGCAGTGATGGCCATGCTTGACAGCCCGACGCTCTACCTGCCACCCATGAACCATgaggaatttgcaaagaaatggAACGAGATTTACGGAAACAACCTTCCACCACTTGCGCTGTACTGTCTACTCCAGCCCGAAGACAGCGCCGCATtccagtttttaattaaatacatgGATCGTATGGCAGAATATCCCGACTGGATTGTGACTAGCGCTCCAAATGATGAGGTTCCAATATCCCATTCCCTCACTGGCTTCGCTACAGCTTATGACTTCATTTATACCTATCTGGACACCCAGCGAAAGGTTCAGTACCTTAAGAAGATACGTGCCGTCACAGCGGAACTTTATGAACTGTCCAAACATAGAGGTTGGGGCCGGCAGTTTCTACAGAACCACCAGACTACAAACATACTAGCCATCCTTACAGGAGCTATCGTAACTGGTGTACACAAAGACCGTGAAACCATGATGTGGAAGCAGGTAGCTGTGAACTACATGGAAAAGACCATGTTCCTCTTGAATCATATCGTAGATGGTTCCCTAGATGAAGGCGTAGCGTATGGCAGCTACACAGCCAAATCCATCACTCAGTACGTTTTCTTAGCGTCACGTCATTTTGAAATAGACAACAAGAATAACAACTGGCTGAGAGCTCACTTCATGTTCTACTACGCCACCGTGCTCCCTGGTTTTCAAAGAACTGTGGGCATCGCTGATTCCAACTACAACTGGTTCTATGGGCCAGAGAGTCAGCTGGTGTTCCTGGACTCATTTGTGCTCAGGAATGGCTCAGGAAACTGGCTGGCGCAGCAGATCAGAAAGTGTCGGCCCAAGGATGGGCCCATGATGCCGTCTGTGGCGCAGCGTTGGGCTACATTACACACTGAGTTTATCTGGTATGACTCAGAGCTCACTCTTCAGCCACCGCCTGATTTTGGGAAAGCagacatgcatgttttttcaaACTGGGGGGTGGTGACATACGGCGCAGGGTTGCCTTCGGGGCAGGACAacacttttgtttcttttaaatctgGGAAGTTAGGTGGGCGAGCAGTGTATGACATCGTTCATGCTAAGCCTTATACCTGGGTCGATGGCTGGACTAACTTCAACCCGGGTCATGAACACCCGGATCAGAACTCGTTCACTTTTGCACCAAATGGACAAGTGTTTGTCTCTGAAGCTTTGTATGGTCCAAAATACAGCTATCTTAACAACGTCTTGGTATTTGCACCATCCCCCACTAGCCAGTGCAATGCACCATGGGAGGGGCAGCTAGGGGAATGTTCCAAATGGTTAAAATGGGGAGAAAAGGAAGTGGGAGACAGTGCTGGTGAGGTCATTGCAGCGTCTTCACACCAGGACACTATGTTTGTTAGTGGTGAAGCCGTGTCAGCTTATTCGTCCGCTATGAAGCTGAAGAGTGTTTATCGAGCCCTTGTGCTGCTCAACTCCCAAACCTTATTAGTGTTAGATCACGTTGAAAAGCATGAAAAGTCTCCCCTAATGTCGTTTAGTGCCTTTTTCCACAATCTTGACATTGACCTGAGATATGTGCCCCACAGGTCTTTGAATAAGTACAGTGGAGCTCTGATGGATGTATGGGACGCCCATTATGAGATGTTTTGGTTTGACAGTCAGGGAGTCAGTCCTGTTGGCAGGATACAAGAAGTAGAACAGGTTGCAGAGTTCAAAAAAAGGTGGACGCAATTCATAAATGTTACTTTTTCCATGGACAGTGTAGTCAGCAGGGTGGCTTACCTAATGCACGGCCCTTTTGTCAAAGTATCAGACTGCAGGTTCGTTGACAACAGTAAAAATGGAGTTAAACTGTCAGTTACCCTGAATGACACAGAGACTACCGTGTCCATAGCAACAAACTACAAAGATATTGGTGCCAGGCACAGCTACTTAGGCTTTGCAGGATTTGCAAAAGCAGAGAATAAACACAAGATAATTCATTTTGGTCAGGGAGTTCAGGTTTTACCCAGCCAACTGAAAAAAGACTCCACATTTAACCTCGGTTTCATGATCAATGTCATTGCAGTGTGGATTCTGTGTTTTGCCATCGCAGTTTTGACCATAAAGAGAAAGTTTAATGTTTCCTCCCGTAAACTTATCCGCTGCACAATTATTTCAGTGCTGCTTTTCTGGGTGTTGGAACTCTTGGTAACATCTCATCGTTGTCAGGAGGTGCTGTGTGGCATCATGTGGAGGGACCTCCGTGTCTCTGAGGAAGCCGTCACTCGATCCACCTTCCCTCTTGATCACAACCCAGAGCCCCTTCCGTTCATAATCATCACCTCTCTTCCCGGCTCTGGAGCTGAGATCCTTCAACCCCTTTTCGACAACAGTTCTGACTTTGTGTATCTCAGTATTCCCTCCACATACCTCCGTATTCCAGAGACCAGTTTTTCTCCTGACTCTTTCACGGACGCTTGTGAGTGGTCCAGAGCGGATGCCCAGAGCGGAAAGTTTCAAGCCATTCAAGGATGGTTCCATTCAATGGTGCATAGCATCAGACTGCACCTGCAGAACATTCAGCTCTACAAGAGCAGTATCGAGACAGGGGAATCAGGGCAAGCTCAGGGAACGAAGAAGAGGCGGAAGCTCCTGATGGAGACGAGCGAGACCAGAGACAGGAGGACTACATCGAGGGAGGTGGAGTATATCAAGGAGTTGAGGCAGCACTTGTCGAACTTCCCGAACGCCTGCCCTGTGCTGAACCTTCGGAGCGGGAGCTGGTCCTTAAAACTCCCGTTTGTTCAAGAAGTCATTGGACGCTCGTTGCGATCTGTTCAAGTAGTGCGTGACCCAAGGGCATGGATCTATATGATGCTCTACAACAGCAAGCCAAGCCTTTATGCCAGCAGAAACATTAGAAAACACTTGCTCAACATTCTGAACCAGGGTGGCGATAGGGCAGGACAGACCTGCACGCAGTTTGACGCAGCATTTCAGCCATTGCGAGAGATCCTTGCTCAGCCAGCTGCTAACCCAGTGCTCTTGCTAGctcatctctggcttgctcacaCTTCCGCCAGCCTCAGAGCGAGCACGGACTTGCCCTCACACACCTACCTTCAGGTGAAATTTGAGGATATTGTGAACTTTCCTGAGGATACTGCAGAAAGGATACACAGGTTTATTGGTGTGCCAGTTGCTCCAGCTGCCATAAACCAGCTCGCATTTGCTACATCCACAAATCTGTATCATCTAGTCTATGAAGGGGATATATCACCTGCAAAAATTAATGTATGGAGAGAAAATATGGCTCCTGATCAGATTAGACTTATAGAACATGTGTGTGGGACTGTCATGGACACACTTGAGTACAAAAGATATGTGTTTGTATGAAATAAATGGAATTGCTATTTGTATAAATGCAGAATGGTTTCTATAAAATggacgttaaaaaaaaaacgttagtGTTTACGCTTTTGTGGAATTGGGCAATTATTTTTAGTGACTATTTTCCATTCCATAATACAAATAAGTGTAGCAATGGAAATATTGACCCTGAAGTTTTGGCGCCACTGCTCATCAagaacaaatttatttacagGTCAACTGAGGACAAAACAAGTTCTGTACCAAGAAATTCTGTACTTGAGAgcaaaaccataaaaaaaaaaaaggcagagctGCTGCATCACTCCATTTATGAGAAATATCTTATTGAGTTTCCTTAGGATAGGAATTCACATGAAATTGTTTTAAGATTAGATTGCTTTTGTGGGACAAAGTGTTAAAATGCAGAAGGATATTTTAGGAAAGATAGAAAAAGCTGAGTTTATAACATATCCAAACAATGATGATGCAAGTGCTTCAGCTTGCTAGACTTTTAAATATCTGTACTTTACTTAAGcttttctttcacctaataCTTGTGACCTTTACTCACtatatttcaaaacaacaatcTCTGCTTGCTTCTCACTACACTACATTGCTCTGTAATCATGTATTTCTAAGTCAGAACATGACTGTTTAGTATCAGACAGCTTCAAGGAGTCGATCTAAATTCCTGGTGACAGCAAGAATGAGACCTCACACCCATCACTGTCATCACAGTCTATCTGCTGCTGtgtacactttgtatttatcatgacagtttgtattgtgacagctagtTATTAGCATTCAACTAGTTTGTATCATCAGAGGTATTTTCATGCTAGCTAACGTGAGAGATTAGTAATTAGCTGTGAACTTTagctaatattaatgttaatattaaccaTGTTCCTTGGTGAAAGCATTAATTTACCATCAGTACCatcattaagtaaggaataaaacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU370833 lncRNA upstream 196440 2116324 ~ 2123434 (+) True G313052
TU370836 lncRNA upstream 343159 1974099 ~ 1976715 (+) True G313053
TU370796 lncRNA upstream 424927 1894702 ~ 1894947 (+) True G313016
TU370724 lncRNA upstream 679148 1624563 ~ 1640726 (+) True LOC113543035
TU370723 lncRNA upstream 683151 1624563 ~ 1636723 (+) False LOC113543035
TU371292 lncRNA downstream 348953 2674433 ~ 2674646 (+) True G313443
XR_004580285.1 lncRNA downstream 405735 2731215 ~ 2736588 (+) True LOC117599939
TU371318 lncRNA downstream 409639 2735119 ~ 2735384 (+) True G313465
TU371354 lncRNA downstream 463762 2789242 ~ 2789496 (+) True G313494
XR_003404407.2 lncRNA downstream 617007 2942487 ~ 2945207 (+) True LOC113543325
XM_026941102.2 mRNA upstream 1007 2298126 ~ 2318867 (+) False tmx3a
XM_034314711.1 mRNA upstream 1007 2298138 ~ 2318867 (+) False tmx3a
XM_026941100.2 mRNA upstream 1007 2305769 ~ 2318867 (+) True tmx3a
XM_026940816.2 mRNA upstream 44928 2268447 ~ 2274946 (+) True toe1
XM_026941061.2 mRNA upstream 143509 2169048 ~ 2176365 (+) True urod
XM_034297694.1 mRNA downstream 320051 2645531 ~ 2655148 (+) True si:dkey-181m9.8
XM_034314885.1 mRNA downstream 329720 2655200 ~ 2661421 (+) False LOC117599997
XM_026940928.2 mRNA downstream 388959 2714439 ~ 2717698 (+) True c21h7orf25
XM_026941137.2 mRNA downstream 393279 2718759 ~ 2728068 (+) True ralab
XM_026941136.2 mRNA downstream 393279 2718759 ~ 2728068 (+) False ralab
TU370902 other upstream 134197 2181979 ~ 2185677 (+) True G313112
XR_003404395.2 other upstream 176561 2133214 ~ 2143313 (+) False tgs1
XR_003404390.2 other upstream 342565 1965740 ~ 1977309 (+) True c21h5orf22
TU370328 other upstream 1183854 1131883 ~ 1136020 (+) False paxip1
TU370320 other upstream 1188191 1128925 ~ 1131683 (+) False paxip1
trnae-cuc_41 other downstream 168752 2494232 ~ 2494303 (+) True trnae-cuc_41
XR_004580350.1 other downstream 329720 2655200 ~ 2662399 (+) True LOC117599997
XR_004580351.1 other downstream 329720 2655200 ~ 2662399 (+) False LOC117599997
XR_004580352.1 other downstream 329720 2655200 ~ 2661421 (+) False LOC117599997
XR_004580353.1 other downstream 329720 2655200 ~ 2660562 (+) False LOC117599997

Expression Profile