RNA id: XM_026941367.2


Basic Information

Item Value
RNA id XM_026941367.2
length 3721
RNA type mRNA
GC content 0.42
exon number 8
gene id atg5
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 3502067 ~ 3523213 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTAGTGTGCGATGCACTACGTTTGAcgtaccctatgtagtgcacttgtaTAGGGGATGTGTAGCAATTTGGGACGCACCTTGGGACTAAGCTTGACACCTCGCTGTCAATGTATTTGCTAGCTTTCGTTGCCTTCCTTTAGCTTAGCCTGGTTAAAACCTTCTCTGTAAACACAGAGCTGTTCAGTGTTTGGTAAATATTTGGTAAATATTCCAAACTAGCCATGTTTCcagatatttgtattttttcgCGTTGTTCGTAAGTAAAGGGGGTTCGGCTGTCACGGATAAGAAGAAGCGCGTCGAGTGTTAAACCTGAACATATCATATGTTTCACCTGGAGGGCTGCGATAATGGCAGATGACAAAGATGTACTTCGAGATGTGTGGTTTGGCCGGATACCGGCGTGCTTCACGCTTTATCCAGATGAAGTCACAGAGAGAGAAGCCGAACCATTTTATCTTCTCCTTCCGAGGGTCAGTTATCTGACGCTAGTGACCGACAAGGTCAAGAAGCACTTTCTGAAAGTCGTAAAAGCCGAAGATGTAGAGGAAATGTGGTTTGAATATGAAGGCACACCTCTGAAATGGCACTATCCAATCGGAGTATTATTCGATCTTCATGCTTCAAATACGGCTCTCCCCTGGAATATCACTGTGCACTTTAAGCATTTTCCTGATCGGGACTTGCTCCGCTGCTCCTCGAGCGCTGTGATAGAAGCCCATTTTATGTCCACCATCAAAGAAGCAGACGCATTTAAGCACAAGGGCCAGGTCATCAATGACATGCAGAAAAAAGATCACAAGCAGCTGTGGATGGGCCTGCAGAACGATAAATTTGACCAGTTCTGGGCCATGAACCGCAAACTGATGGAATATCCAACCGAAGAGGGCGGCTTTCGCTATATTCCTTTCAGAATATACCAGACGCTGAGCGACAGGCCGTTCATCCAGAAGCTGTTCCGGCCTGTTTCTTCCGAAGGCCACGCTCTCACCCTGGGAGATCTGCTCAAAGAGATGTTCCCTGCTGCCATGTGCCAGGATGATGATCCAAAGAAATACCAAGTGGTGATTCACGGCATTGAACCGCTGTTCGAGACGCCCATCCAGTGGCTCAGTGAGCACCTGAGCCATCCAGACAACTTCCTCCACATCTGCATCGTCCCGGCGCCGAGCGACTGAACCCTGAACTGCCCAGGTGGCCCAAGAATGACTCTGCTGCTCCCATCATTGAAGAGGGACCCTTCCAGAAGAGTGTATTCACTTTCTCACACTTCCTGCATTAACATTTGCCTACCTGGCCCGCCACCCCCACTGCTATGAGATTGGTGGAATGGAAATATTGTTCCTTTCTTATGCATGCCATAGGGATGTATATTACACGTTTACTGTCTCAATATCCAAGTATTACCTTGGTATTTTTATGTAACAAATTAGCCTACTAGTGACTACAGTGTGCTCAGAAATGTTGCCATTATCTCTTTTTTCAGATGAGATTCAAATATTTTCTCCACACTAAGTTTACTATGCTAACTAACCTTTTTACATCCCTGGTAtgcatctctctccctccctctctctttctctctctctctttctgatgaGCTCTCTTTACATGTTGCCTTAGAACTCACTCATCTTCACACTGGCATGATGAGGCACACTCCTGATTTTGTCCTGGTTTTGCTGAGTGACAGGTATCCCTGGGTCAGAAAGGCCAGAGCTTAAGTTTTGATCAGCCAGTCGCCACTAgcctttgttttcattttgtcagCTCATTACGGTGCTctcaataaaataatgatgtCCACAATAAACCGTTAAACACTGCACTTAATGTTAAGGTCTAACATTAAGTAGCTAGGCTTGCTTTTATAATGTGTAATCAAAACTAGTAACAAGGTTTACTAGAATGCAAGCTAGCATTAggaaacaaacaataaatttattagctagccaaGTGAAAGCTCCAATGTCCTTGCCCAGTCCCATGTATTTATTTCCTAGAAACCGAACAGTTAGCTAGTTATGTGCAACAATACACGCAAAGTGAGATGAATgacaaaaaagagaagagaagaggagatggCGCTTATTTCGAACTTGACAAAAAGTCACTATGTTGTTGGTGATATTTTGGATATGAGATTGTGTTTAATACTCGCGTCGCAggtaaaaatattaattgtgtcAGGCTAGcgtgtttatttttagtttgatGTCTTTACTCGTGAGATGACTGCGTTGTTAGCAAGAAAATTATATGACAACTTTGTTCTGAAATTTCaacagtgtttccacatacctgcatgCTGCTGACTCAGAAAAGAGCGTCCGTCATCTGCGTAAAGCAATTAATCCGAAGAAACGTGAAACGTGCACTATAGTTACGGCATTGAGGTGCATGAAGTCAATAAAGTCAACATTTAAATATGCTTACAAAatgaaaagttttgttttgCAAAGTCAACAGGGAGtagggtttattttctttttcaagtcAGTGAATCTACATGCCTGTCAACTATTAATAAAATCCTGTTTGTCCCAGGTACTCAGGTTACTCATATATCCACCCCTGTATTATAGTGATGCCATACGATCAAGTTTGTGATTGGCTgttcaaatatgcattaagctCTGCCCTCGTTTCCCCAGGGACGCCTGTGATTCTGCAAAATGAGGATGCACATCGGTGCACATTTTGCAGTATTTACAGCAGCTAACTAACacactatttattcatttagatcTTCCCTTAGAACTTGGTTAATTATCATGAACCACTAAACCCAGCATCTCTGGGGTGGGAAGTTATTACCAATGTTTTATAGGTGCATGCAGGGAGTTGAAAGAGATTTGAAAATTGCAAATGGAATTATGTCCAAGTTGTGGTCACAAACTGTCATTGCTCAATTCCTGTGTGTAGGCTCAGTCTGGGAGCAGAAATGTCATTCAGACAGGtgatttgcataaaaaaataactaatcCAAACTATTATAACATCTTACAAATATAAAGACATACGTTCTTGTgtcttggttttttttgtttgttttggtttgggttttttttgttttgttttgtttttataaataaaaacgaCAGCCTGTTCTTCGTCTGTTGTGGTTAACACTGGATGTCTGTCGTAAGGGAACTGCCCCATAATCTCCTGATTGGAAGCGCAGTACATATAgagatttattacatttaacacattttagctGATACAGTACAATATCTAAACAGCTCTGATTATACAACCGCTAGACAGAACTGTTTAGGCTGGcaacatttgtttgtgtttatttcgtTCGGAGGGGACGTGACGGAGGAGGTTGGAGCAGGGAGCAGACGATTAGCAGCTGAGAGTGATTATTTGCTTATAGGAATAAGTGAGTGTACACTCGCAGACAGATGGGGAGAGcaaatactcaaaccacacCAGGTCACTTCTCAGCAAACTGACTGGAAGACCTGGGGCTTCGGATctttgaaatgtttgtgttgggggatttttttttttttttttttattggactCCAGATGTGTGCAGTGATTGTAATTAATCTGCTGAAATGTCGATACTGAAATCTCCACATTCTTTCAGAACAAATGTGATCAAAcgaatctttctttcttttttcatgcagtggcttgcttttctgtcttttgcTACTTAAAAAGTgcttaatatataattaaaacaatattttgtaaCTAA

Function

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0007399 nervous system development biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K08339 ATG5; autophagy-related protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU371743 lncRNA upstream 12768 3481100 ~ 3489299 (+) False LOC113543208
TU371707 lncRNA upstream 202761 3299098 ~ 3299306 (+) True G313796
TU371493 lncRNA upstream 425697 3076049 ~ 3076370 (+) True G313607
XR_003404407.2 lncRNA upstream 556860 2942487 ~ 2945207 (+) True LOC113543325
TU371354 lncRNA upstream 712571 2789242 ~ 2789496 (+) True G313494
TU371775 lncRNA downstream 1096 3524309 ~ 3524518 (+) True G313853
TU371896 lncRNA downstream 249857 3773070 ~ 3819909 (+) True G313949
TU371923 lncRNA downstream 283935 3807148 ~ 3808690 (+) True G313975
TU371944 lncRNA downstream 322644 3845857 ~ 3846095 (+) True G313990
XR_004580328.1 lncRNA downstream 364814 3888027 ~ 3895685 (+) True LOC117599982
XM_026941285.2 mRNA upstream 12700 3423567 ~ 3489367 (+) False LOC113543208
XM_026941286.2 mRNA upstream 12700 3426805 ~ 3489367 (+) True LOC113543208
XM_026941397.2 mRNA upstream 184116 3298344 ~ 3317951 (+) True sall3a
XM_026941475.2 mRNA upstream 419316 3080016 ~ 3082751 (+) True nrn1b
XM_026940953.2 mRNA upstream 482604 3014486 ~ 3019463 (+) True nebl
XM_034314852.1 mRNA downstream 119102 3642315 ~ 3646672 (+) True LOC113543357
XM_026941244.2 mRNA downstream 124534 3647747 ~ 3662687 (+) True nt5c3a
XM_026941245.2 mRNA downstream 132821 3656034 ~ 3662687 (+) False nt5c3a
XM_026941277.2 mRNA downstream 290040 3813253 ~ 3816854 (+) True pmvk
XM_026940992.2 mRNA downstream 439542 3962755 ~ 3968351 (+) False tagln
trnat-agu_12 other upstream 612679 2889315 ~ 2889388 (+) True trnat-agu_12
TU371295 other upstream 826219 2675281 ~ 2675848 (+) True G313445
TU371294 other upstream 826219 2675322 ~ 2675848 (+) False G313445
XR_004580352.1 other upstream 840646 2655200 ~ 2661421 (+) False LOC117599997
trnas-aga_13 other downstream 102203 3625416 ~ 3625497 (+) True trnas-aga_13
trnas-aga_14 other downstream 102747 3625960 ~ 3626030 (+) True trnas-aga_14
trnas-aga_16 other downstream 104819 3628032 ~ 3628113 (+) True trnas-aga_16
trnap-ugg_21 other downstream 423722 3946935 ~ 3947006 (+) True trnap-ugg_21
XR_004580320.1 other downstream 1069227 4592440 ~ 4692816 (+) False LOC113543063

Expression Profile