RNA id: XM_026941381.2


Basic Information

Item Value
RNA id XM_026941381.2
length 2000
RNA type mRNA
GC content 0.49
exon number 6
gene id rdh10b
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 868721 ~ 873766 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAATGAGAagttagaggtgtgtgtgtgtgtgtgtgtgcgcgcgctgcAGAAGTCGATCGGATGATagtttagctgtgtgtgtgtgtgtgtgtgtgtttagatcgGATCATCTGCACTGAGACTCGGTTTCAGATCAAACTTTCTACAGAAACTTTGTCGGTAGTCGGCAGTGAGGCGGTTGATGATGCACATCGCGGCGGAGTTCTGCGTGGTTTGCGTGAAGGTGCTCTGGTCGTTCGCGGCGGCGGCGGCGCGGTGGCTCGTGAAACCGCGGGAGAAGCGCGTGCAGGGCCGCGTGTGCGTGATCACCGGGGCCGGAAGTGGACTGGGCCGCCTGTTCGCGCTGCACTTCGCCCGCAGAGGAGCCACGCTCGCGCTCTGGGACATCAACCGCACCGCCAACGAGGAGACCGCGGAGCTCGTGCGCGAAATCTACCGACAAAACACCACCGACACGAGCAACACCTGTACAGgttcAGACGACAGCGTTGAGGAGTTGCCCGCGTTCCAGCCGCGGGTTTACACGTACGTGTGTGACGTGAGTAAGCGTGAGAGTGTGTACGCCACGGCCGAGCAGGTGAGGAGAGAGGTAGGAGACGTCACGTTCCTCGTCAACAACGCCGGCGTGGTTTCAGGACGTCACCTCCTCGAGTGTCCCGACGAACTGATCGAGAGGACCATGATGGTCAActgccacgcccacttctggACCACGAAAGCTTTTCTCCCGAAGATGCTGGAGTTAAACGAGGGCCACATCGTGACTGTGGCCAGCTCTCTGGGTCTCTTCACCACGGCCGGGGTCGAGGATTACTGCGCGAGCAAATTCGGCGCCATCGGCTTCCACGAGTCGCTGAGCCACGAGTTAAAGGCGGCGAACAAAGACGGGATCAAGATGACGCTGGTGTGTCCGTTCCTGGTCGATACGGGGATGTTTAAAGGCTGCGAAATCAGGAAGGAGATCGCGCCGTTTTTCCCGCCGCTGAACCCCGAGCACTGCGTGGAGCGAGCCATGAGAGCCATTCTGACGGATCAGCCGATGGTCTGCACGCCGCGCGCCATGTACGCCGTCACCTTCATGAAAACGATTTTGCCGTTCGACGCCATCGTGTGCATGTACCGCTTCCTCGGCGCTGATAAATGCATGTACTCCTTCCTGGCTCATCGGAAAGAATCCACCAACAACAACGAGTCGAAGATCAGCATGTAGTCGCTCGGATCTTCTGTGATATCGCCTTACATCTCTAACGCTCTGGTTCATTTGGAGCAAAAAATAAGAACTGTAATTACAATGCTTAGAAAACTATGGATTTTGTTAAGCTGCCTACACATTTCCGTTTTTAAACCTGATAATTTAATCTTCTACAGATTAGATATGTGCCgatatgatatatttttgccTCGATAATtgcctacattttttttaagaaagaaaatctCACAGGAAAAATCTGACTTATTGTTCAAGCTGTAACAAGCAGGTGTTAtcgcatcataaaatataagaaccaatcagatttcagtatGCAAATGCAGTAAGTACCGGTTTAGCAGGGGAAAGGGGCGGGGTGTGTGTACGAGTGGGTTTTGGATTTGcataacttttttgtttttgtgttttttttcattatattgcattttaaataatgacctTATGTTCTCATTTTGACACCTGCTTCTGATGTTTCCACTAAACATGTCCTCTAGACGACGACCTTCGCTGCGCTCTGAACCGGACAGAAATATCGGCACATGTCTTTATAAAGTCCTCTGATCAGCTTGATTATGAAATAATGCAGTATGTTACTGTAATAGTGTACactatctttatttatatataattatttgtaatttctGTCTTGTTCGATTCCACACTGTGACCAAACGTTTATTTGTTACTTTAGACATTGTTCTTTTTctgaaaactttaaaaatgtattgtattgttttcaAAGGTGCAATATGTATCATTCctacaataaatattttatcctaaaaaa

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0052650 NADP-retinol dehydrogenase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU370220 lncRNA upstream 2000 862387 ~ 866721 (+) True G312509
TU370234 lncRNA upstream 45975 821262 ~ 822746 (+) True G312517
TU369915 lncRNA upstream 109393 715639 ~ 759328 (+) True G312277
TU369922 lncRNA upstream 125592 739463 ~ 743129 (+) True G312283
TU369914 lncRNA upstream 151430 714021 ~ 717291 (+) False LOC113543349
TU370250 lncRNA downstream 1897 875663 ~ 875880 (+) True G312531
TU370257 lncRNA downstream 9638 883404 ~ 886114 (+) True G312534
TU370266 lncRNA downstream 32468 906234 ~ 906446 (+) True G312540
XR_004580327.1 lncRNA downstream 102855 976621 ~ 980051 (+) True LOC117599981
XR_004580295.1 lncRNA downstream 216092 1089858 ~ 1104324 (+) True LOC117599954
XM_026941377.2 mRNA upstream 21704 820530 ~ 847017 (+) True jph1b
XM_026941295.2 mRNA upstream 140856 723451 ~ 727865 (+) True cbln2a
XM_034297687.1 mRNA upstream 151443 704778 ~ 717278 (+) True LOC113543349
XM_026941468.2 mRNA upstream 174383 683806 ~ 694338 (+) True LOC113543348
XM_034314815.1 mRNA upstream 190939 616751 ~ 677782 (+) False mre11a
XM_026940929.2 mRNA downstream 24292 898058 ~ 901624 (+) True tmem70
XM_034314625.1 mRNA downstream 24452 898218 ~ 901624 (+) False tmem70
XM_026941207.2 mRNA downstream 73026 946792 ~ 965617 (+) True trpa1a
XM_026940965.2 mRNA downstream 130143 1003909 ~ 1012192 (+) True shhb
XM_026940830.2 mRNA downstream 180102 1053868 ~ 1066467 (+) True cnpy1
TU370232 other upstream 30199 820555 ~ 838522 (+) False jph1b
XR_004576918.1 other upstream 555993 275159 ~ 312728 (+) False snap91a
TU369780 other upstream 675487 189539 ~ 193234 (+) True pnrc2
TU369781 other upstream 675487 189539 ~ 193234 (+) False pnrc2
TU369797 other upstream 693180 174238 ~ 175541 (+) True G312191
TU370320 other downstream 255159 1128925 ~ 1131683 (+) False paxip1
TU370328 other downstream 258117 1131883 ~ 1136020 (+) False paxip1
XR_003404390.2 other downstream 1091974 1965740 ~ 1977309 (+) True c21h5orf22
XR_003404395.2 other downstream 1259448 2133214 ~ 2143313 (+) False tgs1
TU370902 other downstream 1308213 2181979 ~ 2185677 (+) True G313112

Expression Profile