RNA id: XM_026941384.2


Basic Information

Item Value
RNA id XM_026941384.2
length 4534
RNA type mRNA
GC content 0.45
exon number 23
gene id slco5a1b
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 8386512 ~ 8422245 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGAGTCAGGGAGGGTCTGCAGGAAGAGCGCCGACAGGTTTTGcgtctcctcttcctccctccttctcgTACGTCAATCCCTCCAtcatctctctcttcactgcacATCGCCCTGGAAGAAAACCTTTACAGAGTGAAAGCTGGAAAAGCAGCGGAATGGATTTTTAGCGcgcttgtctcatggatgtatGAGAGGAGGAATGGATTCCCTGCACCTGCTTCTGTCTCTTCTCGCTCTCCAAGTGAACCTCCTGGCCGCGGCCGAGGGCAGATTCGGTTGCCTATTTGAGGAGAATCTGTGTATGAACTATGAGATTTGTTTCAATGATGGCATGTTTGGCCATTGTCAGACAATGATGGGAGCGGATGTGTACACATACGATATCACACCAGCGACCCTGCAAAGATTTCGTACACTACTCTTGAAACTTTCACTTCGAGGCCTGTCATGGCAAGATGATGTCACTCAGCAGGTCCTGTCTAAAGAATTTTCTAAACTACACAGGATCCCCCTTTCACCACCTGACTCAAGACAAATGGTACAGACAGCTGCTGTGGAAGATGAAAGCCTGAAGCCATTGGAAGAGAAATTCAGCAAAAGTCTTCAGAAGTATTTGCTGAACCTGAGTCTGCTGTCTAAACTAGATGGTCAGGTCACCAAAACGAAGTCTTCTCTGCCATCAGCGTATTATCGTTCTGGAAAACCAAACATTAAACTCAGCTCGATCCCACCGGAGTTCACCCCAGATTCACCCTATCAGTCAGCTTCTTTCCCTGACCTTACTCGTTATCAGAGTGACACAGCGTATTACATGCAGCGACAGCAGGATGGTTCAAACTTCCCTCTTACTGCCCTAAAGCAGTATGTGTCTCAAAAAATGGCATCTGGGCAGAGAGGTAGACCAAAACCAGAACCAGTAGTCTCAAAGGGTGGATCCTCACAGTTGCCTGTCAAAGAACCCCTGACTCCAGTAGATGAGACCTTTATCCAAAATGTTCTACGCAATGTAGGAAGGCACAATGTAGATGTGGAGAGTTTGAGTGCAGCAGATCTGGACCAGCTGGCCTCTCTCATAGCTGATGCTCTTCAGGTAGTGGAGAAGCAAGCGGAAAAGGGATACAGACCCAGAGACCTGCAAACAGAAGACCTGCAAACTGAAGACCAGGAAACTGGAGaccaagaaactggagaactgcTGCCCAATGTTCAGCAGCCAGGAGCAGATTCATGGGATGAACATACCTCAGAGTCAGTAAGGCAAATAAGTGAAGAAATTTCACCAGTCAGTCAAATATTTGAGACCATGCCATCCATGTCAGGGGGACAAAACAGGAAGGAGGAGAGATCTAATGCAGACCATAAGGAAATAGAATTGTTGGGGAAGTTGCTAGAGTATCTGGATAAGACCTCCCCGTCAGAGCCGAGCCCGCCTGTAAAGGGGCAGGGCATATCCGTGGAGAGAGTACACAGCAGGACAACCCAGATGGATGTAAAAGTACAGAAGAAGGCCATGGaacaggtggaggaggtggagggcTGGGTGGAGGCTGCAGCTCTAGCACCCTCTTCTGTCCTAGAGATGGATATCACCCCGCACCGCCAAAATGTGAAAGTGCAAGATCTGCAACTTGATGTACAGACCAACAGTAACAATGATGTCTATGGCTACATCATTACAGATACTGATTCTCTTCCCACTGATCAGGGTTTGCACCTGATGGAGCTGTTGTGTCGCAAAGCAAAGATCCAGATGACTGATTTCCTTGAGCTTTCTGTTGTTGGTCCAGCCGTGACATTCCAGGTCCGCACTAATGATCAGAATATTACCACAGCTGCCATTGCCAATGTGGCTGttaGTCAGAAAGCTGCACTAGAGAAAGAGGCTGGAGTCACCATTTTGGAGGCAGGAGTTACCGATAAGACTAAGTTGAGTCAAATTCCTACAAGGTACAGCCACTCTGAATCTATGAAGTTCCTCATCCTTACGGTAATATCCATTGTGTGCATCATCGTGGTCCTGCTGATCTCTAGCATTATCTACTGTCTGCGCCATCGATCGCATCACAAACTCAAAGAGAAACTCACCAATCTCAGCACAGACCCAGCTACTGAAGCCACAGCTACCTACCAGGAGCTGTGTAGGCAGCGGATGGCTGTGAAGCCCCCAGTGGAAAGGGCGGAGCTTCGACAGTCCTCTCGCATAAACAGTGTGTCTTCTCAGCTGAGTGATGGACCAATTCTTAGCCCCTCTGCCCGCACGAGCACTTCCTCCTGGAGTGAAGAGCCTGCACACACGAACATGGACATCTCCACTGGTCATATGATACTGTCATATATGGAGGATCACCTGAAGAATAAGAACAGGTTGGAGAAGGAGTGGGAAGCTCTGTGTGCCTATCAGGCAGAACCGAACACCTGCAGTGTTGGCCAGAGAGACTCCAATGCCAAGAAGAACCGCACGACCACTATCATACCTTATGATCATTCTAGGATTTGCCTGAAAGTGGAGAACAGCCAAGGGAACTCTGAATACATCAATGCTAGTCCTATTATGGATCATGACCCCAGGAACCCAGCTTACATTGCCACTCAAGGTCCTCTGCCCTCGACTGTTTCTGACTTCTGGCAGatGGTGTGGGAAAGCGGGTGTGTGGTGATCGTCATGCTGACTCCTCTTACAGAAAGTGGAGTTAAACAGTGTTACCACTACTGGCCAGATGAGGGCTCTAACCTCTACCATATATACGAGGTTAACCTGGTGTCAGAACATGTGTGGTGTGAGGATTTCCTGGTTCGTAGCTTTTACttgaagaacatgcaaaccaATGAAAGTCGCACAGTCACCCAGTTCCATTACCACACCTGGCTCAACCAGCATACACCAGAGACCAGCCAGGCTCTGCTCGACTTCCGCAGaaaagtaaataaatgctaCAGAGGAAGGTCCTGCCCCATCATAGTTCACTGCAGtgatggAGCAGGGAGGACTGGGACATACATACTGATTGATATGGTTCTGAATAAGATGGCTAAAGGTGCTAAAGAGATTGATATTGCTGCTACACTGGAACACCTGAGAGATCAGAGACCTGGCATGGTTCAAACCAAggaGCAGTTTGAGTTTGCATTGACTGCAGTAGCAGAAGAGGTGAACGCTATCCTCAAATCCCTTCCTTAGTGAGAAATCAAGCAGCAAGAGAcatcccctctccctctccttcttgttttctttctcattctctgcCTCATTCTCTCTATCAGGATGGTGTATATAAAGTTTCATTAAAAgcttttcccccatttttttaTGTGTACTGGCCTCGCAGTGCAGACATTCTattgatataaaaaaagacGTTATATGTTTGGATATATTAATCATATAGCTTTAGGTTTTTCCTCCACATGTAaatgtgcatttcatttttggccacTCTTAAATCTCCGGTGGCTGGTGGCCCATGTTTAGTCATTGTCAAATGTAATACTGTGATAAGCTACCAATAGCTTGTTTCCAATGCTGAAAAGGACATTTAATACATCTGCATCTAAAATTATGCTACAATAACAAGAGTAACTGAAGTTGTTTATTGATATTACATAACATGCAGCTATGGAAAGTGCTCTTGAAGATGTACTCGGTAAAGGCCCAAACGCTGGTAAATGTACCTCTGTTTAAAGGAATAAATTCAGTATCAAGGTCTgcaaatacagttttatttcactttggtTGGTTTATGTACTGCCACTGAGAATGGTCTATATATGGTGCTGGTGCATGTATATAGGTGCAGCAGTGCTGCTCGGCCTTTGTGTCACTGCTTGGCTGAGAGTCcaccaaacaacaaaaaatccaGCTAAATGCAGACCTGTGATCTGAAGCTGATACTGATTGAGGACAGATTAACATAAGAGGCAGattaacataaataatatatggAAAATGATTAACTAGAATCTGAAACTGTGCACTCAAAAGGTGGACCAACATGGTAGGTGTGTAATAAAGTAAACAGTAATTGTACAGTGTTTGACTGTATACTTGGACCAGCCCTATACACACTAACATAACACTACCaagtcagtgtcactgctgtgctgagaacagtacaccacccaaataatatctggtgaGTGGTGGTGCTATGGTGGTGCCGAAAGATGGGTTGAGCGAAGCTTACAACGtgtgcatagcaacagataGCCTACAGTCAGTAGACATAAGTACACTTATAAGTAAGTGACCAATGTGTGTAGGAGCAAAGAGTGGATACTGAGTCTCTTTTTCTTACACTAGTTGGTCTAAGGTTTGGCTTGACATAATTAAATTGTATAATGTGCTGTGATGGTATATTGGGCAGACTGCAGAGGTTTGGCTAGTAAAAGATGTACTACCCTGTTCTGCTAATTACACCTCTTTTCTATGATTCTGATTATTGTATATACAACCAGAATTCTATTATAATCTATTTTGCTCTCTCATCAAATGAAATGCTGCAGTCTTGTGAATAAAGTTTAACTGTATGTGCAATA

Function

GO: NA

KEGG:

id description
K07817 PTPRN; receptor-type tyrosine-protein phosphatase N

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU375146 lncRNA upstream 9420 8376785 ~ 8377093 (+) True G316756
TU375144 lncRNA upstream 52982 8332424 ~ 8333531 (+) True G316754
TU375142 lncRNA upstream 54727 8331506 ~ 8331786 (+) True G316752
XR_004580332.1 lncRNA upstream 124801 8260724 ~ 8261712 (+) False LOC113543009
TU375132 lncRNA upstream 124805 8259258 ~ 8261708 (+) True LOC113543009
TU375442 lncRNA downstream 165750 8587995 ~ 8588211 (+) True G317008
TU375461 lncRNA downstream 239041 8661286 ~ 8661776 (+) True G317027
TU375465 lncRNA downstream 267190 8689435 ~ 8691471 (+) True G317031
TU375493 lncRNA downstream 304096 8726341 ~ 8730818 (+) True G317045
TU375589 lncRNA downstream 371469 8793714 ~ 8793944 (+) True G317113
XM_026941045.2 mRNA upstream 7047 8334824 ~ 8379466 (+) True esyt2a
XM_026941046.2 mRNA upstream 7047 8334827 ~ 8379466 (+) False esyt2a
XM_034314688.1 mRNA upstream 7047 8334828 ~ 8379466 (+) False esyt2a
XM_034314850.1 mRNA upstream 59004 8275578 ~ 8327509 (+) True dip2cb
XM_026941173.2 mRNA upstream 128852 8193755 ~ 8257661 (+) True myo10
XM_026941191.2 mRNA downstream 5574 8427819 ~ 8432247 (+) False lactb2
XM_026941192.2 mRNA downstream 5882 8428127 ~ 8432247 (+) True lactb2
XM_026941189.2 mRNA downstream 15136 8437381 ~ 8462127 (+) True slco5a1a
XM_034314780.1 mRNA downstream 16937 8439182 ~ 8462127 (+) False slco5a1a
XM_026941421.2 mRNA downstream 45137 8467382 ~ 8476972 (+) True adhfe1
TU375135 other upstream 117315 8268709 ~ 8269198 (+) True G316745
TU375134 other upstream 122452 8263339 ~ 8264061 (+) True G316744
TU374748 other upstream 690594 7695534 ~ 7695919 (+) True G316413
TU374286 other upstream 1251012 7133459 ~ 7135501 (+) True G316001
XR_004580329.1 other upstream 1441905 6937340 ~ 6944608 (+) False LOC113543138
TU375607 other downstream 389712 8811957 ~ 8812820 (+) False LOC117599964
TU375892 other downstream 990078 9412323 ~ 9415164 (+) True G317390
TU376185 other downstream 1537084 9959329 ~ 9977901 (+) False pip4p1a
trnar-ucu_12 other downstream 1765506 10187751 ~ 10187824 (+) True trnar-ucu_12
XR_004580322.1 other downstream 2114186 10536431 ~ 10562994 (+) False capn10

Expression Profile