RNA id: XM_026941397.2


Basic Information

Item Value
RNA id XM_026941397.2
length 5333
RNA type mRNA
GC content 0.48
exon number 4
gene id sall3a
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 3298344 ~ 3317951 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTATTGTTATTGCTATCTCTTTCCCTGCACCGGTCGTCCGCCGCCGATGCGCGTGCAAAAAGCGGGGCCGGGTGGCAGcgcatcatcttcatcatcaccatcatcttcatcatgtCCCGACGGAAACAGGCCAAGCCGCAGCATCTCAAATCGGACGAGGAGACTTCAGCGCTCGGGCTGGAATCGGAAAACGTCTCAGGTGAGATCCTGGATGATGCTGACAGCGGTAATGAGAGTCGTAGTGGTAGTGAGGAGACccatgtgtgtgagaaatgcTGCGCCGAGTTCTTCAAGTGGTCTGACTTCTGTGAACATCTGAAGAGCTGCACCAAGAACCCACTTGTGCTTATTATTAGTGAGAATGAGGTCACACCGGACCCGACACGGGAGTACCCAACTGAGCCCTCACCCGTGCCCAGCTGTCCGAGTGAGCCTGCAGACAGCGAGGAGGCAGCCGAGGGCCGGCACACCCCAGCCGAAGTGGATGATGGGGCTGAGATGACTTTGGAGCAAGTAACCACCCTAGACAAAGATGATGAGCCCATGGATGTGGAAATGTCTCCTGAGAAAACACTGGACCCTGAAGATCCAGATATATCACCAGAGCCTGATGTCAGCCTACCTCAGCTTGGCACAGCCCAACCCTCTGGGACAGGTTACAGCATGCCCAGCACAAATGTCACTTTGGAAACGCTGCATGGAACCCGAGTGGCTGTGGCACAGTTTGCCCAAAGCTTTCGTGGGGCAATAGCTAGTGGCGTGTCCACCATGGCCATCCCGATGATCCTAGACCAGCTGATGGCTTTACAGCAGCAGCAAATTCACCAGCTTCAGCTGATAGAACAGATCCGTAGCCAAGTGGCCCTAATGAACAGGCAGAACCCTGCACAGGCGGCTCTCAACCATCATACACACCACAATACAAATGGTGGCTCACAACCATCATCTGCCACTGGCCTTCCCACAATACCCAGTCAGCTCCAGCTACATGGATTCATTACGCCACCTGTCCACCAGCTCCCTATAAGGGTGCCACCCACTTTAAATGCCCAAGGCCCAACCTCATTGTCTTCTACCTTGGAAGGGGGTCACTCCCATGTCTCACAGACAGGTAGCCAGCTGTCCAGTTCTATAATGAACAGCAACACCTCAACAAATTCCTCATATCCACCATCTAGCTGTAGTGTAGTTCCTTCCTTGTTGCCACTTCAGAATTCAGTCactagcagcagcagcagcagcagcaacagcagcagcagcggagCTGGAACTGGTATCAGTAGCAGTGTTTCCCTCCCTAGAAACACCTCAAGTCCTCCAACACTGACCCATGGAAGCCTGCTGAGCTCCCCTTCCAACCTTCCCCTGATGCCTCCGAGTTCCTCAAGTAGTGTCATCTTCCCTAACCCACTGGCCAGTATTGCAGCCACAGCCAATGCACTTGATCCTCTCTCTGCCCTGATGAAGCACCGCAAAGGAAAACCTCCTAATGTCTCTGTATTTGACACAAAGCCTAGCTCAGAAGACCCCTTTTTCAAACATAAATGTAGGTTTTGTGCTAAGGTGTTTGGAAGTGACAGTGCCCTTCAAATACACCTTCGTTCACATACTGGTGAAAGGCCTTTCAAGTGCAACATTTGTGGTAATCGCTTCTCTACAAAAGGAAACTTGAAGGTCCACTTCCAGAGGCACAAAGAAAAGTACCCACACATTCCAATGAACCCCTATCCAGTGCCTGAGTACCTGGACAATGTGCCAACCAGCTCAGGCATTCCTTATGGCATGTCGCTGCCTCCAGAGAAGCCTGTTACCACATGGCTAGACAGCAAGCCTGTTTTGTCCACAGCCCCAACCTCAGTGGGGCTGCAGCTTCCCCCAACCCTGCCCAGTATGATAGGGGGGTATGGAGATTCGCCTAGTCTTACTCCCATCAGCAGGTCacctccaagaccatcaccacccTCAAGTGAGTGTGCATCTCTGTCACCCAATGTTCTCAGTACTGAAGTAAGCACAACCCTCACTTCGGCATCTCCACAGCCCACCATGGGGAGTGATGCACCCCCAGTTTTGAAGCCAGAGGGGATTCATTTGCCATCCAACTGTACCACCAGACCTGGAGAGACCAGCATGCCCTTGACTACTGTGAGCCAGATTGTGCTGTCATCCACAACCACTACCACAACCACTACCACCACCCAGATCACAGATCCAGTGACTCCTCCGACCTCTGGCTCGCATTCTGCCCTTCCAATGATCTCAGATCAATTCAAGGCCAAGTTTCCCTTTGGTGGCCTCCTGGACTCTATGCAAACATCAGAAACCTCAAAGCTGCAGCAGCTGGTGGAAAACATTGACAAAAAGATGACAGACCCCAACCAATGTGTCATCTGCCATCGTGTGCTCAGCTGTCAGAGTGCCCTCAAGATGCACTACCGTATCCACACTGGGGAAAGGccttttaaatgcaaaatatgtGGCCGTGCTTTCACTACTAAGGGCAACTTGAAAACGCACTTTGGGGTTCACAGGTCTAAGCCACCTCTAAGAGTGCAGCACTCATGTCCTATATGTCAGAAGAAGTTTACTAATGCTGTAGTGTTGCAACAGCATATCCGCATGCACATGGGAGGTCAGATTCCAAACACACCTCTTCCTGAGGGCTTTCAAGACATGGACACAGATTTTAACTTTGATGAGAAGAGTGTAGACAACATGAGCAATTATGATGATGAGCTGATTGATGAGATGGAACAGGCCATAGAGGATGAAGCAGATGTCAAAGATGGAGATGTGGACCCATCAAAACCAGCACATTCATATGGAGAGATGTCTCCTAGCAACTCTCCCCCAACTCCGGTCATCTCCAGCATTGCTGCTTTGGAAAACCAAATGAAGATGATTGACTCAACAGCAAATATGAACCGCGCCTTTAGCCTCAAGCCCTCTGAGAATGGAAGTGGGATTGGTGGAGAAAGTGGAGATGTGTTTAACAACGACTCATCCTCTGCCATGGGAGACTTAGAGAACCACAGTGTGGGGAGTCCAGCCCTGTCTGAGTCATCAGGCTCTATGCAGGCTCTTTCGCCTGCTCATAGTCAGCCTGAGAGCCATCGTTCCAGGTCTCCAGGTCTGGTCAATAACAACAGCAGTAATGCAGCCGAGGATATCCAGGACTCCAGTGCAGCTATAGCGACTGTGAAGTCAGAAAAGTCAGACACACCATCTCCAGGTTCTGTACCAGCTGAGCACACTGGTGTGCTAGACCTCACAGCTGCTCAGCCTGCCAGGCCTTATGTTAAAGAGGAGAACCAGTTCAGCATGCTGTTCTTAGGAAGAGATCGAGGTCTAACTGCTTCAAGCTTGATGAGCTCAGCACCAGGCCTCATCAAACTCGAGATGAACGGCCACAGCAAACCGCTGTCTTTGAGTGAGGGCTCCCACTTGCATATGGGCCTTCAGGTGCCTGCCGCAGCACCTCAGACAACAATGAGCCCCAGCCTCAACCCAATGCTGGCACCGCCTCCACCACGCCGGACCCCCAAGCAGCATAACTGCCAGTCCTGTGGGAAAAACTTCTCCTCAGCCAGCGCCCTGCAGATCCacgagcgcacacacacaggtgaaaaaCCCTTCGCCTGCTCCATCTGTGGGAGAGCATTCACCACGAAGGGCAATCTGAAGGTTCACATGGGAACCCATATGTGGAACAATGCCCCAGCCAGACGGGGGCGGCGTCTCTCAGTGGAAAACCCCATGGCCCTGCTGGGTGGTGATGCAATGAAATTCAGCGAGATGTTTCAGAAAGACCTGGCAGTTCGGGCAATGAATGTAGACCCAGGGTTTTGGAACCAGTATGCGGCGGCCATCACCAATGGACTGGCCATGAAGAACAATGAGATCTCCGTCATTCAGAACGGGGGCATTCCTCCGCTTCCTGTTAGCCTCGGAGGGGGAAGCATCCCTTCTCTGGCCAGCATGTCAGGGGGCATGGAGAGGGCACGCACAGGCAGCAGCCCTCCAATGACTGGCCTCGAGAAGACAAGCCTGGAGGTGGGAACTGTACGTCCCTTCTCCAGGTTCCTGGAGGACAACAAAGAGATCGGGATCAATTGATAAGCCGTCATTCAATGGGAAGACACAAACAGACTAAGTAAAGACTTCGAAGGTTCCTCCTTACCCAGTTTGGTCTCTTATGTACTATATTATGTACAGCTGAAGTTTGATATTCTGTTGGTTTTGGATCTATAGTATTCGGTATTGAGTAGAAGTATTTCCCATCCTCCTGTTTCGactatgaagaaaaaaaaacgttccATGTTTGAGAATTTGTCGTCTTGCAAGATTTGCATGGTACTTTTATTGGTTCTTATCAGTACATTTGACTGCTTTTAAGGATTATGTCACATAAAAGAAGAATATCTTTACTCAGTTGATCtctaaaaaggaaaaaaaatgaaatgaagagcAAACTCAGTGTGGATAGACTGACTAATGTTTACTTGgttacagtgtatgttttgaGGTACAAGACACGGGATTAGGTGAAACCGAAATACATTGTCGTAATGTGTGcttatttttttcactcatgAAGTAGATacttgatggaaaaaaaatgtttgaactATTTTAATCTTTGCATTTAGTCTCTTGGCATTGTCTTATATTAATGTCCGGTGTCTTTAGTATTTATAATATACACAAAAGCGGgtataagaaaatatatttaacagcCCCAACATTTTATTGATCTTTGTTTTCTAAACTTTAGACTTCTATTATGGCTGTCTCTTTCAATAAAGACAAAACGTCTCTTCATCTGGCCGATGCGGACACATTGCGAAGTTTTATTTGGAAATCTAGCACATGTCGGTGTAATGGACCTGGTACAAGATGAAAAAGCTAGGATATTGAAAAAGCTGCTGCCTTTACAGACTCGCTTTTAACCTTTGTAaagatgagagacagagatatacAGAAACTTATTGTgtataaagtaaaaacaaaattggTATGCATATTTTGtatcatgaaaaaaaaggatatcCTGATTTGAGATTTGTCATGTTTGTGAATGCACTTTTTAGAGGAACGGTCTTGTCTGTGACTTATCATTAATGATCTGACTGAACTATCTatctcattttgttttttttttgttttgttttgagttttttttttcttttttcgttTTGCCCGTGGGGTTCTTAAAACGTGAGTCATCGAGAAACTTCTGGAAAAAACGGGGGTGAAGGAGTGGGACAGATACGGCTCTGTACTGAAATCTTCACCCCTTCGCTCACATCAAATAATAAAATCGTGAGAAAGGA

Function

GO: NA

KEGG:

id description
K19871 SALL; sal-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU371493 lncRNA upstream 221974 3076049 ~ 3076370 (+) True G313607
XR_003404407.2 lncRNA upstream 353137 2942487 ~ 2945207 (+) True LOC113543325
TU371354 lncRNA upstream 508848 2789242 ~ 2789496 (+) True G313494
XR_004580285.1 lncRNA upstream 561756 2731215 ~ 2736588 (+) True LOC117599939
TU371743 lncRNA downstream 163149 3481100 ~ 3489299 (+) False LOC113543208
TU371775 lncRNA downstream 206358 3524309 ~ 3524518 (+) True G313853
TU371896 lncRNA downstream 455119 3773070 ~ 3819909 (+) True G313949
TU371923 lncRNA downstream 489197 3807148 ~ 3808690 (+) True G313975
TU371944 lncRNA downstream 527906 3845857 ~ 3846095 (+) True G313990
XM_026941475.2 mRNA upstream 215593 3080016 ~ 3082751 (+) True nrn1b
XM_026940953.2 mRNA upstream 278881 3014486 ~ 3019463 (+) True nebl
XM_026940823.2 mRNA upstream 313042 2975646 ~ 2985302 (+) True bmi1b
XM_026940933.2 mRNA upstream 419629 2872529 ~ 2878715 (+) True klhl40a
XM_026941250.2 mRNA upstream 427088 2860285 ~ 2871256 (+) True hhatla
XM_026941285.2 mRNA downstream 105616 3423567 ~ 3489367 (+) False LOC113543208
XM_026941286.2 mRNA downstream 108854 3426805 ~ 3489367 (+) True LOC113543208
XM_026941367.2 mRNA downstream 184116 3502067 ~ 3523213 (+) True atg5
XM_034314852.1 mRNA downstream 324364 3642315 ~ 3646672 (+) True LOC113543357
XM_026941244.2 mRNA downstream 329796 3647747 ~ 3662687 (+) True nt5c3a
trnat-agu_12 other upstream 408956 2889315 ~ 2889388 (+) True trnat-agu_12
TU371295 other upstream 622496 2675281 ~ 2675848 (+) True G313445
TU371294 other upstream 622496 2675322 ~ 2675848 (+) False G313445
XR_004580352.1 other upstream 636923 2655200 ~ 2661421 (+) False LOC117599997
trnas-aga_13 other downstream 307465 3625416 ~ 3625497 (+) True trnas-aga_13
trnas-aga_14 other downstream 308009 3625960 ~ 3626030 (+) True trnas-aga_14
trnas-aga_16 other downstream 310081 3628032 ~ 3628113 (+) True trnas-aga_16
trnap-ugg_21 other downstream 628984 3946935 ~ 3947006 (+) True trnap-ugg_21
XR_004580320.1 other downstream 1274489 4592440 ~ 4692816 (+) False LOC113543063

Expression Profile