RNA id: XM_026941423.2


Basic Information

Item Value
RNA id XM_026941423.2
length 3091
RNA type mRNA
GC content 0.48
exon number 14
gene id LOC113543315
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 4315743 ~ 4350544 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTATCCTATGAGGAGTGCTTAGGGTTCTAGACTTCTAGaactctttttttctgagtgtactGCTTGTGTGAAGTCGGTGCGTCATTACGCACGCTCCAACCATTTACAGAGTCACTTCAATCCACTCAGGAGGTCGAGCTGAGAAAGTGGGGGTGGTGTGAGAAAATCACCAGCTCGTTTCAGACATCTGCATGGTTTAGATCGAGTTGCTCTGTGGTGTGAGAGCCTCGCTACACACTTGGTGGTTCTCTGGTTCTTCCAGTGCGGATGTGTGGCTGCGCGTCGCCGCGGCTTTGAGCTGAACCTCGGTTTCTCGCGGACAGGAGCCATGGCGCGCTGCGCGTTCTGGAGCGCGCTGTGtctcttcctcatgtcctccACTGGACTTTCTTTCGGTACCGGTTTCTACTCGTTCCCAGGACTCACACTGCAGCATGTGAGCTCAGAACAAAGCGTCGCTGGACCCCCGGCCGCAGGCATCAGCTCTCAGCGCAGgAACTGGTGCCAGTACACTGTATCGAAGACGGTTACATGCCAGGTGCATAACGGCACAGAGACGACGGTGCAGAGGGTGTTCCAGGGCTGTCGATGGCCAGGACACTGCTCCAAAGTCATCAGTTACAGGACTCTGATCAGGCCTGCATATAAGGTAGCCTATCGACAGGTGACTGCGCTCGAATGGAGGTGCTGTCCCGGCTTCCTGGGAAGTGACTGCAGTGTagAATGTATGAACTGTACGGGTTACACTGGTCTGAGCAATCGCCTGAACAGCCTTGAGAGTAAGATCAAGTTGTTACAGGAGGCTGGACCTCGTCCTCCATCTATCAATACTCTGCCAGAGAGATCAACAGACAACGAGGTAGAAACCCCAGAGCCCACCCCTAGGGGACCCCCACCTTTTTGGCAACCAGGGACAAGGGGCCCTCCAGGGCCAATAGGCCCACCTGGTATACCTGGTTCAGCGGGACCACCTGGACCTGCAGGAGAGACAGGTGCTCCAGGCCGACCGGGACCCACAGGCCCAAAGGGGGAAAGAGGCCTTCCAGGTGAAATTGGTCTTCCAGGTCCTCCAGGTCCTCCAGGACAGCCTGGCCTGCCTAACTCTATTCCTCTACGGGGCGATGTATTTCAGGGTCTCAGTCCAGATGAAACAGCAGGTCTTATAGGACCTCCAGGCCCACCAGGTCCTTCTGGCCCCCCAGGTCCTTCTGGAGCTCCTGGCATTCCGGGTTTACCTGGAGAAGATgCACCGAGGGGTCTCCCTGGCAAAGCTGGAGAACCAGGACTTAAAGGAGACCGAGGTGAAAGGGGACCTCCAGGATTAATCGGGGAGCAAGGCTTGGCAGGTCCAATGGGTGCCAAGGGGCAGAAAGGCGAGCCGGGAGAGAGCCTGCCTGACGGTGAAGGAGTTCAGCAGCTGAGAGAAGCTCTGAAGATCCTGGCTGAGCGAGTGCTCATTCTGGAGCACATGATTGGCATCCACGAGACCCCAGCAGAGGCCGGCTCTGGACTAGATGGCCTGTCAGATGCTCTTGGTCTACCACCAGCGAAGATAAAACGGGCCGAATCAGTGCGCCTTCGCTCTTCTTCTCTCCACACCGGCCAGCAAAAGAGGAGGAGTGTTTGACATTTACACTAGTGATTTTGTGTAGCTGTCATTCATTGCTCTTAATAATTATCTAGTGAAAGCCTGAGCAAACAGCACTATTAAGAACTTTTCATcatttataaggaaattgtttttgctgtacagttttcacaagaaaacATATGAATCCTTGTTTTTAATAAGACATGAaagtgtttttatgtgtgtatgtgtgtgtgtactctttGTAAGTTCTGATTTTTCTAGTTTATGGACTTTGCGCAACCTGTCATCTTGCTGTCTCTGCACTCGGCTCGTTTTTActcacacccagtaaacacacacttgtaGACAGGCCCACACTACACCTGGTGAAGGCTCGTCAGCGTCCTTCGGGCTTGTTCTCAGTTCTTGAGCTCGTTAAGGCTGTAGTGAGTCGGGAAGGAACAAATGAGCTTCCCGCCTGCTAGGCAGCTCCAAATAAAACATTGTCAAATGAGAAACATCTGGATCAGgctcaaaaaagaaaagaaaaaaacaaaacaccccAGCCACCTATTGTTTTGGTTCTGCAGTTCTGAAAACAGCTTGTTCGGATTTGGTAGGATGTTTTCTGTCAGCTAAATTGCAACCGTGGCTTTGATTCCCCATGGTCTTGGctttctctgtgcttcttttctgttttctcctgTATTATTTGTCTCGCCCTACTGTGCGAGTAAGTGTAACAAACATATCAGTTGGACTGCAGCTTTCCTTCTCTGCCATTGCAGACCATCTTTTCTCCCGAGTATGTTTACTGAGAGTACAGCTGGCTCTGTAGAAGGGAAATTAATAGGGTACTTACTCTAAGATAACGAAACATGTCTATGTGACTCGGTGCTCTGCTGTAATGGGATTGCCCTATTTATAAGCCATTTGTTTTCAAAAGCCGGTTTTCCCAGATAACATTTGTCTCACTCATTTACGCTCCATTAGCATTGAGACAAGATCACAGTGTATATTGACTTCCATGCATTAGGACCCCATTTCCAATCATTTATTTAACGACTTACTGTCATTTTAGCTTAGATGTTATATTTGAAGTATTGGTTTACTTTGACTGTAGCCTGTACGATTTTACCATAAGTTGACCTCTTTCTTACATTAGCAGCTGATTAGCGGTGGTACACTGCTggttcagtaaaaaaaaaaaaaaaaaaaaatgacttaacCAGGTTGCTCTCGTACAGTAGttaacagcagtgttaatgatatttaacaataaaatatgagGTGATTTAGTTTGATTTTGTACTGTATTGGAGACTGTATGGTGTCATGGCTGTTAGTATATTCTGCCTTGTATTCTGCcaatatttactatttttgcacTCTGATGTCAGGTTGATATGGCACTGACGTAGCAATAAAAACTGATCTGAAGGTTGTTGGTGGGGGTTCTTTTGTAAATTGGTGCacacaaaaaatgtaatgtcaTTTAATAAAAGATTCAATACACA

Function

GO: NA

KEGG:

id description
K24358 COL26A, EMID2; collagen type XXVI alpha (EMI domain-containing protein 2)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU372366 lncRNA upstream 20671 4294865 ~ 4295074 (+) True G314364
TU372364 lncRNA upstream 22016 4290254 ~ 4293729 (+) True G314362
TU372207 lncRNA upstream 315431 3996502 ~ 4000314 (+) True G314222
XR_004580328.1 lncRNA upstream 420060 3888027 ~ 3895685 (+) True LOC117599982
TU371944 lncRNA upstream 469650 3845857 ~ 3846095 (+) True G313990
TU372412 lncRNA downstream 29093 4379637 ~ 4384865 (+) True G314402
TU372416 lncRNA downstream 167057 4517601 ~ 4527820 (+) True G314404
TU372431 lncRNA downstream 338425 4688969 ~ 4762095 (+) False LOC113543063
TU372650 lncRNA downstream 429394 4779938 ~ 4780145 (+) True G314609
TU372656 lncRNA downstream 437556 4788100 ~ 4788414 (+) False pou3f2b
XM_026940950.2 mRNA upstream 7693 4300799 ~ 4308052 (+) True wdr53
XM_026940925.2 mRNA upstream 25635 4283167 ~ 4290110 (+) False LOC113543011
XM_026941172.2 mRNA downstream 26450 4376994 ~ 4533974 (+) True cux1b
XM_026940914.2 mRNA downstream 195591 4546135 ~ 4576648 (+) True LOC113543006
XM_026940916.2 mRNA downstream 195591 4546135 ~ 4576648 (+) False LOC113543006
XM_026941235.2 mRNA downstream 232483 4583027 ~ 4590956 (+) True bud23
XM_026941051.2 mRNA downstream 241897 4592441 ~ 4692571 (+) True LOC113543063
trnap-ugg_21 other upstream 368739 3946935 ~ 3947006 (+) True trnap-ugg_21
trnas-aga_16 other upstream 687632 3628032 ~ 3628113 (+) True trnas-aga_16
trnas-aga_14 other upstream 689715 3625960 ~ 3626030 (+) True trnas-aga_14
trnas-aga_13 other upstream 690248 3625416 ~ 3625497 (+) True trnas-aga_13
trnat-agu_12 other upstream 1426357 2889315 ~ 2889388 (+) True trnat-agu_12
XR_004580320.1 other downstream 241896 4592440 ~ 4692816 (+) False LOC113543063
TU372694 other downstream 586504 4937048 ~ 4958120 (+) False LOC113543089
TU372695 other downstream 586504 4937048 ~ 4958120 (+) False LOC113543089
TU372696 other downstream 586504 4937048 ~ 4958120 (+) False LOC113543089
TU372849 other downstream 737557 5088101 ~ 5091097 (+) False sptssb

Expression Profile