RNA id: XM_026941503.2


Basic Information

Item Value
RNA id XM_026941503.2
length 1904
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC113543373
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 6971552 ~ 6982646 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGCCTCTATCCATGATTCAGTGGGGCGTGATGATCCTTGTCTTTGATTTTGCTTCCTCAGGGCGTGTGCTTTGGAAGTTGAAGGAACATGTGCATTCGGTCCATGAACAAAGAGCTGAACAGCGCTTGCTGATAACGCACAAATCTCATCTCATTGAGGATCAAATTCAGCAGAAACTTGACCATTTTAACGGAAGAAACACGGAAACCCTCCCTCAGAAATTCATTGTGAATGAAGCTTACTGGAAAAAGCCTGATGGTCCTGTGTTTCTCTACATTAGTGGTGAAGGCCCTCTGACAAAATTCAGCGTGTTGGCTGGTCACCATGTGGCCATGGCGGAGAAGAATGGAGCACTGCTGGTGGCACTCGAACACCGTTTCTACGGTTCGAGCATCAATCCAGGCGGCCTGGAGCTTTTGAATCTGCAGCACCTTTCCAGTCAGCAGGCCCTTGCAGATCTGGCTGCTTTCCACAGCTTTATCAGTCAGAAATATGGCCTTACTGACAAGAACATCTGGATCAGTTTCGGGGGCTCATATGCTGGCGCTCTCTCCGCCTGGTTCAGGGGCAAGTTTCCTCACCTCGTCTATGCGGCTGTGGCATCCTCGGCCCCTGTTCAGGCCAAACTGGATTTTTCTGCTTATAACAAGGTGGTGGGACATAGTCTTACAGAGGAGAGTGTAGGCGGCTCTTATAAGTGTTTAAATAGTGTTCGGAAGGCCTTTGCGGCCCTGGAAGCAGCTCTGCTTGGGGGGAAAGAGATGAAGGTGGTGAAGGATTTTGGGTGCTGTGATGTGCCTAAGAGCCCAGAGGACCGCGCTGAGCTCGTGCAGAGCGTGGCTGACATCTTCATGGGAAGTGTGCAGTACAATGAGGAAGGAGTGATGCTGACCATCGCTCAAATCTGTGACATCATGACCAATCAGAGCCAAGAAGAGGCCTATGACAGGCTGGTCGAACTCGCAGCGATGTATCGTGCTACAGCAAAGGAGCCATGTCTGGATATCTCTCACCAACACACCATCCTGAACCTGAACAAAAGCACCAATGGTAGCTTCGGGTACAGACAGTGGTACTACCAGACCTGCACTGAGTTCGGCTTCTATCAGACCTGTGACGATGCTAGCTGCCCATTCGTGCGCACGCTGACTCTGCAGGACCAAATTCAGCTCTGCTCCCAGCTGTTTGAGATTCCTCAACACACACTCCCCATGAACATCGCCTTCACCAACCAGTACTACGGAGGAGATCAGGCCCAAACCCAGCGTGTGCTCTATATCAATGGTGACATTGACCCTTGGATGGAGTTAAGTATTGTGCATAATGGGACTGGAGTGGATAAGGACAGAGCCATCGTGATTCACGGCACTGCTCACTGCGCGGATATGAACCCTACACGCTCCAGGGACAAGCCCTCACTGCGCCAGGCCaggaagGAAATTGAAAGGCATGTTGTCATGTGGCTGAAGAGTGCAGCACGGGAGCACAcgctctgaccaatcagcatgcTTGCAAGTTGATCACCTGACTGAACCACTTTGCTCTGCCATGACCCTTCTCTTATGCCTTCTGTCAAATTATCTTATCAGGCTGCatgtgtgatgtgagtgtgtgtatgactgtgtgaCTATGTGCTGGGATAGAAAGTTACTAAATGTGTGTAGTTTGTATGTCTGTCAGTTGGCATTACTGAGAAAGAACCttcaagctgtgtttttctggtttgtgtgtggtgtgtgtgtgtgtgtggtgtgtgtgtgtgtttttatacaaTCAAAAGACATTTTATGCTATTAATATTAGTTCTTGAGTAATATtaccattaacattatatatGAAGTCACAGTGAACAGTATAACATGCATAAAGAATTTCACAAGAAATTCTGTCTCATGATTTTTGA

Function

GO: NA

KEGG:

id description
K09649 PRSS16; thymus-specific serine protease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU374158 lncRNA upstream 36375 6934949 ~ 6935177 (+) True G315901
TU374147 lncRNA upstream 56011 6914261 ~ 6915541 (+) True G315894
TU374135 lncRNA upstream 76935 6894337 ~ 6894617 (+) True G315886
TU374111 lncRNA upstream 244864 6726474 ~ 6726688 (+) True G315862
TU374042 lncRNA upstream 317489 6646145 ~ 6654063 (+) True G315811
TU374244 lncRNA downstream 50919 7033565 ~ 7033806 (+) True G315968
TU374285 lncRNA downstream 145045 7127691 ~ 7129877 (+) True G316000
TU374593 lncRNA downstream 443815 7426461 ~ 7433424 (+) True G316288
TU374628 lncRNA downstream 522433 7505079 ~ 7505404 (+) True G316317
TU374657 lncRNA downstream 582440 7565086 ~ 7568068 (+) True G316339
XM_026941532.2 mRNA upstream 1604 6961944 ~ 6969948 (+) True ech1
XM_034297786.1 mRNA upstream 2021 6961943 ~ 6969531 (+) False ech1
XM_026941533.2 mRNA upstream 2021 6961944 ~ 6969531 (+) False ech1
XM_034297788.1 mRNA upstream 2021 6961944 ~ 6969531 (+) False ech1
XM_026941228.2 mRNA upstream 12663 6945526 ~ 6958889 (+) True hnrnpl2
XM_026940849.2 mRNA downstream 14838 6997484 ~ 7008738 (+) True meis3
XM_034314805.1 mRNA downstream 162755 7145401 ~ 7156229 (+) False atm
XM_034314802.1 mRNA downstream 162757 7145403 ~ 7203200 (+) True atm
XM_034314803.1 mRNA downstream 173064 7155710 ~ 7203200 (+) False atm
XM_034297691.1 mRNA downstream 276626 7259272 ~ 7355018 (+) False dscamb
XR_004580329.1 other upstream 26944 6937340 ~ 6944608 (+) False LOC113543138
TU373737 other upstream 744312 6226717 ~ 6227240 (+) True G315581
TU373444 other upstream 1074722 5894504 ~ 5896830 (+) False shox2
trnat-agu_13 other upstream 1751934 5219545 ~ 5219618 (+) True trnat-agu_13
TU372849 other upstream 1880455 5088101 ~ 5091097 (+) False sptssb
TU374286 other downstream 150813 7133459 ~ 7135501 (+) True G316001
TU374748 other downstream 712888 7695534 ~ 7695919 (+) True G316413
TU375134 other downstream 1280693 8263339 ~ 8264061 (+) True G316744
TU375135 other downstream 1286063 8268709 ~ 8269198 (+) True G316745
TU375607 other downstream 1829311 8811957 ~ 8812820 (+) False LOC117599964

Expression Profile