RNA id: XM_026941532.2


Basic Information

Item Value
RNA id XM_026941532.2
length 1545
RNA type mRNA
GC content 0.46
exon number 10
gene id ech1
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 6961943 ~ 6969948 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAACATGGCGTCCACTATACGTATTTCCACCGCGCGCAGACTCCAGGCTGTGTCCCTATTGGACAACTAGAAAACTAAGTAAAAGTGTACAAGACATAGCCTACGCAGTGCGTGTAGACAGACAGGAAGGCGTTTGGACTTTGTGTCTGGAAGTTTAGCTGAAAATCTGGTCATAGAGCAATGAACTGCATTCTGAGATCTGCTGTTCTGGGAAGCAGGGGCCTGTGGTTTCCTACTCTTAACGCTGTTAGAGCCATGTCGACTTCAGGAGGCCCCACTCCACCCTTCACCACCCTGTCAATCACCCACCCAGCCAATCACATCACTCATGTAGAGCTGCACCGACCAGAGAAACGCAACGCCATGAACAAAGCCTACTGGAGtgaAATGGTTGAATGCTTTAATCAGATTGCTGAAGACTCAGAGTGCCGTGTGGTGGTGTTCTCGGGTGCtgggaaacttttcacttcagGTATTGACCTTATGGACATTGCTGGTGATTTGCTGCAGCCCAAAGGAGACGATACAGCCAGGATAGCATGGTATCTTCGCCACATCATTTCCAAATACCAGAACACGTTCTCAGTCATCGAAAAGTGTCCGAAGCCCGTGGTGGTGGCAGTGCATGGCGCGTGTGTGGGAGCAGGAGTGGATCTAATCACAGCCTGTGATATCCGTCTGTGCACACAGGACGCCTGGTTTCAGGTGAAGGAGGTCGACATTGGCCTGGCAGCAGATGTTGGAACTCTGCAGCGTCTCCCTAAAGTGATTGGCAGTCGTAGCTTGGTGAATGAGTTAGCGCTTACTGCAAGGAAAATGTATTCTGACGAAGCCAAGAGCTGTGGACTAGTAAGTCGTGTGTTCCCTGATAAAGACTCGATGATGGCTGGAGCTCTGGAGATAGCAGGCGAGATCGCAGGCCGGAGTCCTGTCGCTGTCCAGGGAACCAAAATCAACCTCCTGTACTCCAGAGACCACAGTGTGACTGAGGCCCTGGACTACATAGCTACTTGGAACATGAGCATGTTGCAGACCCAGGACCTTATGAAGTCAGCGCAGGCAGCCCTGGAGAAGAAGAGCCCTAAAGACGTGCCCTTCTCCAAGCTTTAAAGTAGAAGGCGAAGAAGATCCAGGGCTGTCGAAGCTGCCTGTTGACTCAGCTGAgacttcatcatcatccacatATCTTTAGTTCTTCCTGCTAAGTCTGAATATTTTTTagtctgtgtatttttagaCTGGTTAAAGGGCTGAATACTGGACGTGAAATGATagcttaatttttaattaattggtTTATTATTTGCAGGTGCCTTGGACAGTAAGATAATATTCTATTCTAAACTAATACTCCAAAGCTTGTTTTGAGTGTTAACATATACAGTAGAAGTAGATATTTTCTTCTGTTCCTGTGTGACTGCTGAATGTAGTGCACTTAACACATTTAATTTCCTTGGATGCtcactttaatttttatttgaaaaaatgtcACATTATGTCTTTCATGTGTGATTTATGGCTGAATTAAAAAGAATGTAATATAGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K12663 ECH1; Delta3,5-Delta2,4-dienoyl-CoA isomerase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU374158 lncRNA upstream 26767 6934949 ~ 6935177 (+) True G315901
TU374147 lncRNA upstream 46403 6914261 ~ 6915541 (+) True G315894
TU374135 lncRNA upstream 67327 6894337 ~ 6894617 (+) True G315886
TU374111 lncRNA upstream 235256 6726474 ~ 6726688 (+) True G315862
TU374042 lncRNA upstream 307881 6646145 ~ 6654063 (+) True G315811
TU374244 lncRNA downstream 63617 7033565 ~ 7033806 (+) True G315968
TU374285 lncRNA downstream 157743 7127691 ~ 7129877 (+) True G316000
TU374593 lncRNA downstream 456513 7426461 ~ 7433424 (+) True G316288
TU374628 lncRNA downstream 535131 7505079 ~ 7505404 (+) True G316317
TU374657 lncRNA downstream 595138 7565086 ~ 7568068 (+) True G316339
XM_026941228.2 mRNA upstream 3055 6945526 ~ 6958889 (+) True hnrnpl2
XM_026941229.2 mRNA upstream 3055 6945526 ~ 6958889 (+) False hnrnpl2
XM_026941194.2 mRNA upstream 16954 6937343 ~ 6944990 (+) False LOC113543138
XM_034314795.1 mRNA upstream 16954 6937582 ~ 6944990 (+) False LOC113543138
XM_034314797.1 mRNA upstream 19125 6937342 ~ 6942819 (+) True LOC113543138
XM_026941503.2 mRNA downstream 1604 6971552 ~ 6982646 (+) True LOC113543373
XM_026940849.2 mRNA downstream 27536 6997484 ~ 7008738 (+) True meis3
XM_034314805.1 mRNA downstream 175453 7145401 ~ 7156229 (+) False atm
XM_034314802.1 mRNA downstream 175455 7145403 ~ 7203200 (+) True atm
XM_034314803.1 mRNA downstream 185762 7155710 ~ 7203200 (+) False atm
XR_004580329.1 other upstream 17336 6937340 ~ 6944608 (+) False LOC113543138
TU373737 other upstream 734704 6226717 ~ 6227240 (+) True G315581
TU373444 other upstream 1065114 5894504 ~ 5896830 (+) False shox2
trnat-agu_13 other upstream 1742326 5219545 ~ 5219618 (+) True trnat-agu_13
TU372849 other upstream 1870847 5088101 ~ 5091097 (+) False sptssb
TU374286 other downstream 163511 7133459 ~ 7135501 (+) True G316001
TU374748 other downstream 725586 7695534 ~ 7695919 (+) True G316413
TU375134 other downstream 1293391 8263339 ~ 8264061 (+) True G316744
TU375135 other downstream 1298761 8268709 ~ 8269198 (+) True G316745
TU375607 other downstream 1842009 8811957 ~ 8812820 (+) False LOC117599964

Expression Profile