RNA id: XM_034314552.1


Basic Information

Item Value
RNA id XM_034314552.1
length 2334
RNA type mRNA
GC content 0.50
exon number 19
gene id slc44a5a
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18816009 ~ 18871360 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTGACAGCTCAGGAGACTTCTGTGGACAAAAAGGCACAGCCAATGCAAACCCATCCTGTTCTACTTCAACATCCTGAAATGTGCAAATCCTGCTGTTCTGATAAACCTGCAGTGTCCTACCACTCAGATGTGTGTTTCGACGTGCCCGGACCGCTTCGCCACCTACACCGACGTGCAGCTCCAACACCCCTTCAACAGGAGCCACTGGGAATATTACAGACAGTTCTGCAGGCCGGGATTCAACAATCCTAAGAAGcCTGTGGCTCATGTCCTGCGTGATGAAGACTGTCCGTCAGTGATTGTGCCCAGCCGACCATTTTTCCAGCGATGCCTTCCAGACTTTATCATGAGGAATGGCACGCTGACAGTCGCTAACAGAACGGCTTTTAAGGACGCACTGGATACGGCGAGGAGTGTGAGGGAACTCAGAGATGCAGCtgaTGGTATAACGGGTCTGCTGGAGGCCAAGCAGCTCGGCATGAAGATCGTGGAAGACTACGCCAACTCCTGGGCCTGGATTCTAATagggtTAATTCTAGCACTGGTCATCAGTCTGATCTTCATCCTGCTCCTGCGCTTCACTGCTGGCCTCCTGCTCTGGTTCACCATCATCGCCGTCATCCTACTCATAGCCTacgGAATCTGCCGTTGTTACTGGGAGTTCACGCTTTTGAGAGAGACTCCCGAAGCAGACGTCAGCATCACAGACATCGGAGTCCAGACGAACCTACACGTCTACCTGCAGCTCAGCCAGACGTGGCTCATCTTCTtGGTGTCTCTGGTTTTAACTGAAGCATCCGTAGTTTTAATGCTGGTCTTCCTGAGGAAGAGAGTGTGCATCGCCATCGCCCTGCTCAAAGAGGGCAGCaagGCCATCAGCTACATCATGTCTGCTTTATTCTACCCAATCGTCACCTTCGTGATGCTGGCTGTGTGTATCTCTTACTGGGCCGTTACAGCTGTTTTTCTGGCATCGTCTGGTGAAGCTGTGTACAAAGTCATGTCAGCGCAGCCCAACTGCAAGCACGCCAACCTCACCTGCAGTCCAGAAACGTTTAACAGGACCAACATCACTAAGCagtgtccaggagctcagtgtcTCTTCGCGTTCTACGGCGGAGAGAGCGTGTATCACCGCTACATCTTCCTCCTGCAGCTGTGCAATCTGCTCGTCTTCCTCTGGTTGGTTAATTTCACCATCGCGCTGGGGCAGTGTACACTCGCCGGAGCCTTCGCATCCTACTACTGGGCCAAGAGGAAACCTGATGATATCCCATCATGCCCtgttttctcctcctttttccGGGCTGTACGGTATCACACCGGGTCTCTTGCTTTCGGCTCACTGATCTTAGCTTTCGTCCAGTTCATCCGAATAGTACTTGAATATCTGGACCATAAGCTTAAAGgagCTCATAACGCGTTTGCTCGCTTCCTGCTCTGCTGTTTAAAATGCTGCTTTTGGTGCCTGGAGCGTTTTATTCGCTTCATGAACAGGAACGCATACATCATGATTGCAATCTATGGAAAGAGTTTCTGCACGTCAGCTCGGGAAGCCTTCTTTTTGTTAATGAGGAACGTTGTGAGGGTAGCAGTGTTGGACAAGCTTACAGACTTCCTGCTCTTCTTAGGGAAAATTCTCATAACGGGGAGTGTTGgTGTTATTgccttctttttcttcacacacaAGATCCCCATCATTCAGGAAGAAGTTCTAGTTCTGAATAATTACTGGGTGCCTCTCCTGACAGTCGTGTTCGGGTCGTACCTGATCGCACACGGCTTCTTCAGCGTCTATGCAATGTGTGTGGACACACTGTTCCTGTGTTTCTGTGAGGACCTGGAGAGGAACGACGGCACGCCGACGAAACCTTTCCTCATGTCTCCCGGTTTGCGCAGAATTCTGGGAAGCGTGGATCAGAGCCCCGGGAAATCACGAGCAGCACTGCATCAGTGCGCCGTCAGAGAATAGCTTTACTCCTCCTGCTAGCTAGCATGCTTTAACTCTTTAACTCTCCTCCTGCGGCTGTGAGGACGCCGGCCGCTACGTCCTGTACTGTAACCCGTCTCCGATGCACTAAGACTGTGACAAACACTGAGCATTTACTTCCACTAGAGGAGACTGAAGGTgctatgcactaacacacacacacacacacacacacacactcacacacacacaggttctgtCCAACTTTCTATCTGCCTTATTCTCACACGTACAGCCGTTTACAGGATTTTTTGCGACATCCAGATTGACCCGAGGTCTGATCGCTTATTCAGAGGTAgaactgatgttttttttgtgattggaataaaaaaggacattttta

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU382194 lncRNA upstream 39745 18814614 ~ 18814817 (+) True G322747
TU382193 lncRNA upstream 41714 18812503 ~ 18812848 (+) True G322746
TU382191 lncRNA upstream 42227 18811184 ~ 18812335 (+) True G322744
TU382190 lncRNA upstream 42910 18811105 ~ 18811652 (+) False G322744
TU382184 lncRNA upstream 88960 18765192 ~ 18765602 (+) True G322738
TU382250 lncRNA downstream 77900 18944698 ~ 18984806 (+) False ssbp3a
TU382261 lncRNA downstream 92285 18959083 ~ 18959319 (+) True G322802
TU382249 lncRNA downstream 97943 18964741 ~ 18985082 (+) False ssbp3a
TU382280 lncRNA downstream 126960 18993758 ~ 18994623 (+) True G322817
TU382465 lncRNA downstream 240588 19107386 ~ 19109334 (+) True G322957
XM_026946133.2 mRNA upstream 44352 18799203 ~ 18810210 (+) True sdr16c5a
XM_026946330.2 mRNA upstream 56701 18791345 ~ 18797861 (+) True penka
XM_026946325.2 mRNA upstream 91074 18756729 ~ 18763488 (+) True bpnt2
XM_026946146.2 mRNA upstream 100502 18747527 ~ 18754060 (+) True mffb
XM_026946198.2 mRNA downstream 52269 18919067 ~ 18925573 (+) True cryz
XM_026946199.2 mRNA downstream 52269 18919067 ~ 18925573 (+) False cryz
XM_026946200.2 mRNA downstream 64261 18931059 ~ 18936790 (+) True fam151a
XM_026946195.2 mRNA downstream 84890 18951688 ~ 18983979 (+) True ssbp3a
XM_026946196.2 mRNA downstream 84890 18951688 ~ 18983979 (+) False ssbp3a
TU381842 other upstream 431931 18415817 ~ 18422631 (+) False pex5lb
TU381774 other upstream 627329 18226562 ~ 18227233 (+) False si:ch211-162e15.3
TU381775 other upstream 627426 18226562 ~ 18227136 (+) False si:ch211-162e15.3
XR_003404718.2 other upstream 1222954 17570649 ~ 17631608 (+) False egfra
XR_004580278.1 other upstream 1370885 17478834 ~ 17483677 (+) False fuz
TU383181 other downstream 1571904 20438702 ~ 20440561 (+) True G323534
XR_004580310.1 other downstream 1770786 20637584 ~ 20659411 (+) False arhgef4
trnap-ugg_22 other downstream 2048606 20915404 ~ 20915475 (+) True trnap-ugg_22
TU383298 other downstream 2154391 21021189 ~ 21136847 (+) True G323615
TU383295 other downstream 2268321 21135119 ~ 21136847 (+) False G323615

Expression Profile