RNA id: XM_026946138.2


Basic Information

Item Value
RNA id XM_026946138.2
length 2377
RNA type mRNA
GC content 0.38
exon number 2
gene id xcr1b.1
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 17066201 ~ 17071957 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgagtgtgtgtgtaatgtggttGGATACCATGCAGATCTCTGATTATCCTCTGGAGCTGATTTTCACCAACTGTTACGGATGCCATTGTGAAGCTGGAGGACGAACGCAGGTTATACTGTCATCATACTGTGTGCTGCATCAAGGGAACCTACGATAAAGCTTGAACGTAATGGAAAAAATCAATTCCACAGAATATTATGATAATTATAGTTACGATTATGATATTCCTGATCATTCATGCAACAAGACCGAAGTGATGCAGTTTGGAACACTGGTCACCCCAATCTTTTTTACGATGGTCATCATGTTCAGCTGTGTGGGAAATGCATTGGTCCTGTGGGTGctgattaaatatgaaaatctgAAATCCATGACCAATGCATTCCTCTTGAACCTGGCCATCTCTGACCTGGTCTTTACCTTCGGCCTGCCCTTCTGGGCCTCAGACCTCGTCTTGGGCTGGATATTTGGAGAAGCTGTGTGCCAGACAGTGAGCTTCATCTTCTACCTGGGCTACTACAGCAGCCTCATCTTTCTCACAGTTATGACCGTGCATCGATATATGGCCGTGGTGCACCCACTCTCTATGCTTTTGAACAGCACCACATACTATTCCATTGGGATTTCTGCATTTATCTGGGTCCTGAGCTTCTGTGCCGCGACccctcatttcattttcagtgtggtcaTATTCCCTTTTGAAGAGGGCAGAGCTTACTGCAATTATAACAACATCAGATGGAAACTGATTGGCGTTTACCAGCAAAACATCTTCTTCCTCATTGCCTTCTTCACCATTGCTTTCTGCTACATTCGAATTCTCGGACGCCTGCTCAGACCCGTGTCACACACCCGTCCCAAGACCGTGAAGCTGATCTTCTGCATTGTGGTGGCTTTTTACTTGGGTTGGGCACCATACAATGTGGTCATCTTCCTCGATTCTCTGATACACTGGCAAATCTCACCATTCAACGAGTGTCATGTGAGCACCAGATTGGATTATGTTTTTTACGTCTCCCGACTGGTGGCGTTCTCTCACTGCTGCCTAAATCCAGTGTTTTACGTCTTTATGGGGGTCAAGTTCAGAGATCACCTAAAGAAGATGCTGAAGAGTTTCTGCAAGAAAGATGATCAACCTCACGACAGACCCCTGAGTCATCTGATTTACTCAAATGGGGAGGAAATTTCCATGTTCTAGCTGAGCTTGCAGCAGTTTCTTTATAGTAGGAAAGTAGCCAAAAGTGCCTGTGagctttaaaattttaaatgttttgtattttaaatgttttgtattcAAAGCTTTTTGATTTCCTCTTCTGAATTTGTTCAATATACCGGAGAatcatcaaaatattttttaattaaaagacatttttaaagtaattactTTAAGGATTGTAGTcaaaattttccaaaactttcaaaactttttttttgtaaatattaaagattgtagtatttttttaaaaaaatattttgatactTAATTGTTCTAATATTATGTactaaaaaattatttgtacaGGACCAATCATTTTTACTTATAACCTAAAGgtgttttaaaagtgtttctatgCTTATAATAATCATGCACTTACACATTATGCATATACATTATACTTTAGGAACTGTGAAACTGTGGGACATGTGACAGATCTCactagtttcttcatttctacATGTCTTCTGCTTTCATTTTGCCAGCCCATAATTTAGCCCTGCAAAGTGCTCCAAACCTTTGCCCTAAAAATCAACCCATAGACCATACAGAGGTTCAGCAGAGGGGTTGGGTTGGAGTTGAAGACCTGCCGATATTTTCATGGCAATTACAATTCATCTCTCAGACAGCAGGGGGCTCTAAAGAACTCATGTAGAAATCATGAATGATCATGAATAATCATGAAtaaattctgtattttatttagcttgtatttaaaatgcttaaaatactAAATACAATGCATAAAAGTTAATTTTggcatcttttttttgtaatcagaTATGTCTACACAGTATAGGTGTTTAATGAATATTGAATAAACTATGACAACATTTTAGGTGgcagtacatttttttcctctgcgGTATTTTCATAATTTGCACACTACATTTATTTTGATGCATGTGAGTTTAAGATTTTTGAATTCTTCATTGGTGCTGTGCTCATTTCAGAAGCAAATTTAAGCAAATGTGAACAGAACCAGCTCTACCTGATGTGCAAAATAAGCAGCTACTTAGGGTGATTTTGGTAACCGCTGCCAAGAGGTCAAGAAATTTTTGTTTGGGCTGTGAGTAAGACTGAAACATAGATCTTGTGAAAAAATGAGTTTCttatatgtttttaatcatgTCCAAATAAAAAACCCTAAACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380963 lncRNA upstream 105467 16958745 ~ 16960734 (+) True G321704
TU380843 lncRNA upstream 173177 16892813 ~ 16893024 (+) True G321602
TU380827 lncRNA upstream 206623 16792714 ~ 16859578 (+) True G321591
TU380813 lncRNA upstream 273763 16792128 ~ 16792438 (+) False LOC117595733
TU380818 lncRNA upstream 276594 16789186 ~ 16789607 (+) True G321585
TU381407 lncRNA downstream 409428 17481385 ~ 17482562 (+) False fuz
TU381408 lncRNA downstream 409956 17481913 ~ 17483644 (+) False fuz
XR_004580280.1 lncRNA downstream 453614 17525571 ~ 17537160 (+) True LOC117599934
TU381461 lncRNA downstream 517115 17589072 ~ 17666213 (+) False npc1
TU381471 lncRNA downstream 559257 17631214 ~ 17631512 (+) True G322127
XM_026946355.2 mRNA upstream 75089 16975923 ~ 16991112 (+) True ghrhra
XM_034314649.1 mRNA upstream 109641 16952977 ~ 16956560 (+) True LOC117599965
XM_034314648.1 mRNA upstream 118855 16941842 ~ 16947346 (+) True ftr67
XM_026946367.2 mRNA upstream 127527 16935805 ~ 16938674 (+) True si:ch73-52e5.2
XM_026946365.2 mRNA upstream 128713 16931308 ~ 16937488 (+) False them6
XM_026946338.2 mRNA downstream 3773 17075730 ~ 17081658 (+) True xcr1b.2
XM_026946359.2 mRNA downstream 166969 17238926 ~ 17293166 (+) True cntnap2b
XM_026946203.2 mRNA downstream 223207 17295164 ~ 17311204 (+) True cul1a
XM_026946145.2 mRNA downstream 241125 17313082 ~ 17321037 (+) True mcm6l
XM_026946118.2 mRNA downstream 251954 17323911 ~ 17347484 (+) True ahrrb
TU380835 other upstream 213777 16851445 ~ 16852424 (+) False LOC117599970
trnag-gcc_20 other upstream 879160 16186971 ~ 16187041 (+) True trnag-gcc_20
trnag-gcc_19 other upstream 880634 16185497 ~ 16185567 (+) True trnag-gcc_19
trnag-gcc_18 other upstream 882059 16184072 ~ 16184142 (+) True trnag-gcc_18
TU380434 other upstream 933837 16131335 ~ 16132364 (+) True G321257
XR_004580277.1 other downstream 406877 17478834 ~ 17483677 (+) False fuz
XR_004580278.1 other downstream 406877 17478834 ~ 17483677 (+) False fuz
XR_003404718.2 other downstream 498692 17570649 ~ 17631608 (+) False egfra
TU381774 other downstream 1154605 18226562 ~ 18227233 (+) False si:ch211-162e15.3
TU381775 other downstream 1154605 18226562 ~ 18227136 (+) False si:ch211-162e15.3

Expression Profile