RNA id: XM_026946199.2


Basic Information

Item Value
RNA id XM_026946199.2
length 2081
RNA type mRNA
GC content 0.42
exon number 9
gene id cryz
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18919067 ~ 18925573 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAGCGGGGTACGGTATGGTAGCCGAGGGGAATACGCGGAAGTATTTACGACATCGCGAAACTCATGTTCCAAAGTCTGAAATAAACtatactgtgtgtgagtgtgtgtgtttgcagcttGGTTTCCCAAAATCAAAATGGCGTCTTCAAAAGTAATGAAAGCCATACGAGTGTCCGAGTTTGGAGCTCCTTCGGTTCTGAAGTTCTGCACTGACGTCCCGGTTCCTGCTCCAGGACCCAAGCAGGTGCTCATtcgcgtgcatgtgtgtggagtGAATCCAGTGGAGACGTATATCCGTTCTGGGACCTACGCACGCAAACCCAGCCTCCCCTACACTCCTGGATCCGATGTAGCCGGTGTGGTGGAGGCTGTGGGAGATGGAATTCGCTTCCTGAAGGCAGGTGATCGAGTGTTTACCACCAGCACTGAGACAGGAGGATACGCTGAATACACCGTGGCTTCAGAGGAGTCTGTTCACAAACTGCCTGATTCTCTAAATTACAAACAGGGAGCTGCTGTCGCAATCCCGTATTTCACAGCGTACAGGGCCTTATTTCACAAGGCGCATGCTAAAGCAGGAGAGACTGTTCTGATTCATGGAGCCAGTGGAGGGGTCGGAATTGCGGCGTGTCAGCTGGCCCGAGCGTTCGGAATGAAGGTTCTGGGTACGGCTGGTACCCCTGACGGCATGAAGCTGGTGCTCAGTAATGGAGCTCACATGGCCTTTAACCACAGAGAAAAGGACTACGTGGATAAAATCCAGgatGCGACTGAAGGCCACGGTGTTAACGTGATCATCGAGATGCTGTCGAACGTGAACCTGAGCAATGACCTGAAACTGCTGGCAATCGGTGGCAGGGTGATGATTGTAGGATGTCGAGGTTCTGTCGAGATTAACCCCAGAGACACGATGGCTAAAGAGTCCAGTATCATCGGTGTCTCTTTGTTCAATGCCCCAAAGGAGGAGAAGGCAGAGACGGCCGCGGCGCTGTTCGCAGGAATGGAGGCCGGGTGGCTCAAACCTGTGATTGGTCCGGAGTACTCACTCGACAAAGCTGTTCAAGCCCATGAGGACATCATCGACAGCTCCGGGGCTTCTGGGAAAATGATCCTGATTATGTGAAACCTACTAAACCCTGTCACTGATCTAAGGGGTTTTGTTTTTGGTCAGATTTGAAGCAGAATCGCAAGTGTCCTGACTGAAGTCCTCTTTTCTGTGACATTACTGTTGTATTCCATCATCAGAAGTCATCATGGTAGTTGATTTTAGCCAGCTGACCTAATCCCAGCTAACAGGGAGCATATGTGATTCGCTAGCTAGCGTTAATTATGTTAGTCAGCTCAGTCTCTGGGCAATATTTAAGCTTAATTCTTGTTTTTGAGAATTTGAGAAGCAAACAAAAAGGTCACATGCAAATCATGCTAAAGATTTTAATGTACAATGATATTTTCCTGAACGATGATGCCTAGGTAAAGACAGAATCAATTTTTTTCtggaataaaaattttaatcgtCATTAATcctcatttatcatcatgaaatGCTTATATAATTGAAGGCTGATAGACTAAATGAATTCACACTGCTTTGTAAAAGTATTTATCTGCCATTTAAAGTTTTCAAAGCATTTCAGGATtacatctttttctttcctgtagttttttatccattaatatgttttactgtacagttacactgtacactacatttTGCCAATTATACATTGTTTTGCAtagatattttaaagaaaactgaCACCTGAAGtatgatgtttaaaaatgtttaacatttactgTGAATTTGCTCTTACAAAAATTGGAACTATGCAAAAAAATGAACTTGAATGATATCTACATAGTGTTTTGTAGACCATGACCGTTAATCCCTCAGTATATTtagaagaaaaatataataaataaaatctgtcgTTCATTTTTAATAGGACGTAATGATATTATCGAACATTGTAATGAGATGAAAATTTAATATCAGGACACGCTTCATTGAAATAATTTGTAATTAGGTTTCCACAAGCATGTTATAAATTCTGTACTGAAATAAAATCGATTGATAAAGTAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU382194 lncRNA upstream 104250 18814614 ~ 18814817 (+) True G322747
TU382193 lncRNA upstream 106219 18812503 ~ 18812848 (+) True G322746
TU382191 lncRNA upstream 106732 18811184 ~ 18812335 (+) True G322744
TU382190 lncRNA upstream 107415 18811105 ~ 18811652 (+) False G322744
TU382184 lncRNA upstream 153465 18765192 ~ 18765602 (+) True G322738
TU382250 lncRNA downstream 19125 18944698 ~ 18984806 (+) False ssbp3a
TU382261 lncRNA downstream 33510 18959083 ~ 18959319 (+) True G322802
TU382249 lncRNA downstream 39168 18964741 ~ 18985082 (+) False ssbp3a
TU382280 lncRNA downstream 68185 18993758 ~ 18994623 (+) True G322817
TU382465 lncRNA downstream 181813 19107386 ~ 19109334 (+) True G322957
XM_026946110.2 mRNA upstream 52269 18816009 ~ 18866798 (+) False slc44a5a
XM_034314552.1 mRNA upstream 52269 18854562 ~ 18866798 (+) False slc44a5a
XM_026946133.2 mRNA upstream 108857 18799203 ~ 18810210 (+) True sdr16c5a
XM_026946330.2 mRNA upstream 121206 18791345 ~ 18797861 (+) True penka
XM_026946325.2 mRNA upstream 155579 18756729 ~ 18763488 (+) True bpnt2
XM_026946200.2 mRNA downstream 5486 18931059 ~ 18936790 (+) True fam151a
XM_026946195.2 mRNA downstream 26115 18951688 ~ 18983979 (+) True ssbp3a
XM_026946196.2 mRNA downstream 26115 18951688 ~ 18983979 (+) False ssbp3a
XM_026946356.2 mRNA downstream 69984 18995557 ~ 19002207 (+) True cdcp2
XM_026946319.2 mRNA downstream 80954 19006527 ~ 19014193 (+) True cdc7
XR_004580282.1 other upstream 47707 18816009 ~ 18871360 (+) True slc44a5a
TU381842 other upstream 496436 18415817 ~ 18422631 (+) False pex5lb
TU381774 other upstream 691834 18226562 ~ 18227233 (+) False si:ch211-162e15.3
TU381775 other upstream 691931 18226562 ~ 18227136 (+) False si:ch211-162e15.3
XR_003404718.2 other upstream 1287459 17570649 ~ 17631608 (+) False egfra
TU383181 other downstream 1513129 20438702 ~ 20440561 (+) True G323534
XR_004580310.1 other downstream 1712011 20637584 ~ 20659411 (+) False arhgef4
trnap-ugg_22 other downstream 1989831 20915404 ~ 20915475 (+) True trnap-ugg_22
TU383298 other downstream 2095616 21021189 ~ 21136847 (+) True G323615
TU383295 other downstream 2209546 21135119 ~ 21136847 (+) False G323615

Expression Profile