RNA id: XM_026946200.2


Basic Information

Item Value
RNA id XM_026946200.2
length 2754
RNA type mRNA
GC content 0.45
exon number 8
gene id fam151a
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18931059 ~ 18936790 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTGAACCCTCTTAGAAGAAGTCAGGTTCATCCCAAGTCTGGTTCTAACCACGAGGACAAAGATGTGAAGAGAACATCCAAAAAGATCAAGAAAGACAAATCTCAAAAGACtattgtgaaaaagaaaaatgaaggaCAAGAGAGCGAAGAAAAATCCAAGAAGGACAAGATTACCCAGAAGACGCAATGTGATGAAAGTTCAACCAATCCAGGTGAAACTCAAAGTTTAGAAAAGAATTCAGAGGAACCAGGTTCACTGATGCAGAGTTCAAATCTTTTAGCTGTAAGTACAGAACCACTTGGTACAGCAAATACTACAGACCCTCAAGTCCCAATCCTGGACTTGAACCTGTCAGTGAGCACACCAGAAGATGCCAGAAGTCTGCAGAAAGAGTTTCATATGCCACAAGATGGAGAAGATCTTCCAAATGACTCTCTGACCCCAGTGTCCTCAACTGTCTCTGTTGTCCAGGAGTACCTGTCATCAGGTGATGGCTCACCAAAGAGGAAGATTAGACTGATTGTACCTGAGAAAACCTCCAGCAGGCCTCAGACTGCACTGGAAAAGAAAATCAGATAGATGTCCAGCATGTCTTGTGAGATATCTCCAAAGTGCCATTTTTAGCTGTCCATTCACTGATGGTGTTCATGACCAAATTTCATGCCAGATTAGTTTCTGTGCAATTCAAGGGCCAAGAGTCATTTATATAAGTCAGATAACAGCAGCACAAAGTGCTGTCTCTCcagaatattttttctttacGATCCATTGATAAGATAGCTAGGCTTTAAGATAGCTAGGCTTTAAGATAGCTAGACGGCTGTACTGCAGTACACCACATTTCATGGGACAGAACTGAGCTTTCTTCAGAGAAAACAGAGCAAGAAtggatgagaagaagaagagtaaTGAAAGGCAACAGGATGAGGAAGGAGATGAAGAAAAGGAAGCAAAGACTATACTGGGGATTTGTACCAGACAGCAGTTCACTATGTTCTGTGTGGCTGTTGGGCTTGTTGTGCTGCTGCTCATCATAACAGTAACCTCCGTCGTTCTGACCATGAATTCGGGTTCAGGAACTTCGGAGACCATGGTAACGTTCCCTACGGATGGAGACATGCTGGAATTTCTTCTTCAAAATGGGGAGATTCAAGAGAAAGATGGACTCTATGCTACATGGTATCACGCTGCAAATACCAAAGCTGAAACCAAAAAAGCCCTGGAAAGTGACGTTATGATTCTGGAGGCTGATGTCAATGTTCAAGGTCATAATACCATTAATGAAACCAATATTCCAATCATGGCCCATCCACCAGATGTGTACAGTGATAACACTTTGGAAGAGTGGCTTGATGAGGTTATCAAATCTAAGAAAGGAATAAAACTGGATTTTAAAAGTCTTCAAGCTGTGGAGCCTTCACTCGATCTTCTCAGGATCAAGAATCAAACAGGAATCAACCGTCCCGTATGGTTGAATGCCGATATCCTTCCCGGTCCGAACGTTCCTGGTTTCTGGCCCGTGGTCAACGGCACTCGATTCTTTGAACTTATCCAGACGAAGTTTCCAGATGTAACCATCTCACCAGGATGGAAGGTTCTTTATCTGTCCCTCTTCCCCAATGTGACTTACACGCAGGCTATGGTGATGAAGATGTACGACACCGTCAAACACCTTCCACAAAAAATCACGTTTCCTGTTCTGGCAGTTATGGCGAAGAATGGATGGCCTCACCTAAGCTGGCTTCTCAGCCAGTCCTCCAGGTTCAGTTTGACCTTGTGGCAAGGTGAGGAGAACCCCACTGTCAATGACCTGCTCTTCATCAGAGATAACACTAACCCTCAGCACATCTACTATGACATCTACGAGCCGGTGCTGTCCCAGTTTAAAGAAGCTGCAAaGCAGAAAGATAGACCAAGAAGGTTCTATACAGGTGGGGACATAGTGGACTATTTCAAGCCTGCAAACAGTGACGGACTTAACATCCAGTGGGAGGAGGTGTATGACCGAGCTTCTCTTCTATCTATACTCAAAGAAAGCCCAGGTGGGATGCTTGTGATTCCGGTAACATCTGGGACAGGTGATCCGTGGACTCCAGTGGTTGAAGGTTCACTGCCAGAGCTGCCTCTCCAGGATTGTCTAGATTTAATCCTTGCTTCAAAGGATTCATGGGGCATCTACCTCAAGGTGAAGTCCCAGATACAGCTAGCTACCTCACTAAATCTGCTGCGAGAAGCATACGCTAGCGACCTACTCTACCATCCAGTCTGGATCAACATGGACATCGCCCACGGAGTCTTCAACGTCGAAGGCTACATCACAGGCCTGGAGTTTGTGAGAACCATTAACCAGATTTTCCCATACGTCACCATGGCTCCTAGCTGGCCTCAGGAGAGTCTGGATCAGGGTTACACACCACAGATGGTTGAGGACATGATGGAACTCTTCCAAGAGGTTTGGCAGGACGTCTCACTGCAGCTGTTGGCTGTCTATCTGGAGAGATCAGAGGCTGGAATTAGGATTCTTCAACAAAGTCAGGCACGTTTTTCTCTCACGGCAGAGCACAGGACAAGGAATGGAGGACTTGGGATGGAGAGCTTTAAGTTTGTTCGTAATGGGACCAGACAGCGAACCTTTTACAACATTCCGAATGCATTTAAGGGGTTTATCAACCAAGATACCAAAGAGTATAAATACAAGCATGTAAAATAAAGAGGTGTTTTGTAGGAAATAACAACCGAAAGCAAATTTTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU382194 lncRNA upstream 116242 18814614 ~ 18814817 (+) True G322747
TU382193 lncRNA upstream 118211 18812503 ~ 18812848 (+) True G322746
TU382191 lncRNA upstream 118724 18811184 ~ 18812335 (+) True G322744
TU382190 lncRNA upstream 119407 18811105 ~ 18811652 (+) False G322744
TU382184 lncRNA upstream 165457 18765192 ~ 18765602 (+) True G322738
TU382250 lncRNA downstream 7908 18944698 ~ 18984806 (+) False ssbp3a
TU382261 lncRNA downstream 22293 18959083 ~ 18959319 (+) True G322802
TU382249 lncRNA downstream 27951 18964741 ~ 18985082 (+) False ssbp3a
TU382280 lncRNA downstream 56968 18993758 ~ 18994623 (+) True G322817
TU382465 lncRNA downstream 170596 19107386 ~ 19109334 (+) True G322957
XM_026946198.2 mRNA upstream 5486 18919067 ~ 18925573 (+) True cryz
XM_026946199.2 mRNA upstream 5486 18919067 ~ 18925573 (+) False cryz
XM_026946110.2 mRNA upstream 64261 18816009 ~ 18866798 (+) False slc44a5a
XM_034314552.1 mRNA upstream 64261 18854562 ~ 18866798 (+) False slc44a5a
XM_026946133.2 mRNA upstream 120849 18799203 ~ 18810210 (+) True sdr16c5a
XM_026946195.2 mRNA downstream 14898 18951688 ~ 18983979 (+) True ssbp3a
XM_026946196.2 mRNA downstream 14898 18951688 ~ 18983979 (+) False ssbp3a
XM_026946356.2 mRNA downstream 58767 18995557 ~ 19002207 (+) True cdcp2
XM_026946319.2 mRNA downstream 69737 19006527 ~ 19014193 (+) True cdc7
XM_034297785.1 mRNA downstream 69737 19006527 ~ 19014193 (+) False cdc7
XR_004580282.1 other upstream 59699 18816009 ~ 18871360 (+) True slc44a5a
TU381842 other upstream 508428 18415817 ~ 18422631 (+) False pex5lb
TU381774 other upstream 703826 18226562 ~ 18227233 (+) False si:ch211-162e15.3
TU381775 other upstream 703923 18226562 ~ 18227136 (+) False si:ch211-162e15.3
XR_003404718.2 other upstream 1299451 17570649 ~ 17631608 (+) False egfra
TU383181 other downstream 1501912 20438702 ~ 20440561 (+) True G323534
XR_004580310.1 other downstream 1700794 20637584 ~ 20659411 (+) False arhgef4
trnap-ugg_22 other downstream 1978614 20915404 ~ 20915475 (+) True trnap-ugg_22
TU383298 other downstream 2084399 21021189 ~ 21136847 (+) True G323615
TU383295 other downstream 2198329 21135119 ~ 21136847 (+) False G323615

Expression Profile