RNA id: XM_026946207.2


Basic Information

Item Value
RNA id XM_026946207.2
length 5485
RNA type mRNA
GC content 0.53
exon number 48
gene id LOC113546386
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18692192 ~ 18716552 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAATTTCAGCACCTGTGATGATTATTGGCTCATGTCTGGCTTGATTAGATCATAAACTGGAGCTCAGGAGGGAGAAACAAGACACGGAGAAGCTGGATTAGCAGTGAAGGAAGGCATCAGGAGTAAAAGGACGTTGTTCTTTTAGCCAAAGCAATGAGGTCATTGATCTGCAGCACTGCATGGCATCTTCTCATTATCTGGTGGATCGCACTGGTGTACCTTTCCGAACAGCATATTGATGCGGGAGAAGTCATGGAGCCATGTAATGGCAGGGACTGCTCCACGTGCAGGTGCCAACCTGCCAAAGGTGCCCGGGGGGCACCAGGGCGACTGGGTGAACAGGGGATTCAGGGTGAGTACGGTCCACACGGCCCACCAGGACCACAAGGTGAGAAGGGCAGAAGAGGGGCGGAGGGGGAAGAAGGGCCTGATGGACCTCCAGGGGACAggGGGATCACTGGTGTTCCAGGTTTTCCAGGAGCAAATGGTGTGGATGGACATGTTGGTGATGGAGGACTTCCAGGTCCACCGGGATCATGTGGCACTCAAGGGACTCAAGGGGAAAAAGGTATCCCTGGGACACGTGGGTTTGATGGAATACCTGGACACCGAGGTCCTAAAGGACAGAAAGGCGTGAAGGGAGAGCCGATATTAGCCAATATATATCTGGGAGCTCCAGGTCCAACTGGCCATCCTGGCCTTCCTGGATTCCCTGGCATCCTTGGGGTACCAGGAATTCCAGGCTCATATGGCCCAGAAGGCTTAAGAGGTCCCCCAGGGATACGAGGACTACCAGGAAAGTCACGTCGGGGTCCGAGAGGAGATGAcGGAGACCCTGGAAAACCTGGCACACCCGGTCCACCAGGTCCTCCAGTTACACCCGGACCTGATGATCTTCCCAAAGGAGAAAAGggagaaaagggagaaaaggGACGCTGTGGGCCAGATGGACCAGATGGACCCACAACAGGCCCTGGTGtgaaaggggaaaaaggaaTTCTTGGATTTCCTGGTTTACAAgGTCTCCAAGGTAAAGATGGACCAGCAGGACCTCCAGGTCTACAGGGACACAGTGGAGACCCAGGTCCACCTGGTCACCGAGGTCACCCTGGTCTGAAGGGTGAAATGGGGGATCCAGGTTTGAAAGGTCCTCTAACTGTTCTGAAAATAGAGCGAGGGCCACCTGGTGATCCAGGGCCCTGTGGACCACCTGGGCCACCTGGAGATTATGGATTAATGGGGAAACCAGGATTCCCTGGCCATCCAGGAGAATCTTTCCCAGGACCAGCTGGCGATCCTGGACTGCCAGGCTCTGAGGGACCCAAAGGGTTCAAAGGAGACTCGGGTCCACTTACTGAATTAGAACCAGGACCTCCTGGGCCACCTGGGCCACCTGGGCTTCCTGGAATCAAAGGAGTCCAAGGTCCACCTGGTTCACCTGTTAGATTAGATAAGTGTTGGCCTTGTGATCTGGAATCACCAGGGGAAAAAGGGGACAAAGGATTGCCTGGGGTAAAAGGTGCTAAAGGGCAAAAAGGTTATCCTGGGGATAATTATTGCAGTTCTGATTGGGAAGGGCCACCTGGTCCTGCTGGTCCTCCTGGACCCCCAGGATATGATGGAGTTCCTGGAAGTGCAGGAGGGCGAGGTGATCCAGGAGCCCCAGGAGATCCAGGTCTAGCTGGTGCTATTGGACGACGAGGCCCAAGTGGTCCACAAGGTAACAAAGGTCAGAAAGGAGACACTTATTTTTCAGCAGTAAAAGGCATAAAAGGAGATAGGGGTGATCCCGGGTTCCCTGGTCAACCAGGAGATAATGGCCACCCAGGTGTTTCAGGACCACAAGGTTCGGTTGGAGACCCAGGACCACCAGGAAATGGGTATAGAGGTCAGAAAGGATACAACGGTTTCCCAGGACCCATAGGGCCTAAAGGTTACCCAGGGCCTCGAGGTCCTCAAGGCCAAGGCATACAAGGTCAAAAGGGGCTGCCAGGGGAACCAGGAAACCAAGGCCCTGATGGCCTGCCTGGATTTTCTGGACCTCCAGGTCTTCCCGGGTCTTCATGTTGTCCTGACAACCCTGGGCCCCCAGGACCAAAGGGTGACATTGGCAACCGAGGAGCTCCCGGGCCACCAGGACTACCTGGGTATGACGGTCCTCATGGAATACCAGGCCCAAAAGGAGAACAAGGAGATGATGCCTCTGGAGGGTATGGGCCTCAAGGTCTTCCAGGACTGCCTGGAGATCCAGGTGATCCAGGTCCCAATGGAAGCAGCTATGTTGGCACACCAGGCTCACCTGGGCCACAAGGACCACCAGGGCTTAAGGGGTCTCAAGGTAATGGTCTTTCTGGTAGTCCTGGAATTCCTGGACTAGTCGGATTACCTGGAAGCCCTGGTCCAAAGGGTTTTCGTGGTCTATTGGGTCCTCCTGGCGTAACAGGAGAAAATGGGCCCCCTGGTCCTCACGGATGTAATGGGCAGGCTGGAAATGATGGGGACCCAGGTCCACCTGGAATACCAGGGACTACACCTGATTTTTGTGCTGCTTTCTCAGGTTTACCAGGTCCCCCAGGACCCACAGGACCCAAGGGTCCGCCTGGACTGCCAGGCATCAAGGGAGAAAAAGGACCGATTGGTATTCCGGGATATGGACCAAATGGTACTTCAGGCACACCTGGACTACCTGGCCCCCCTGGTCCCCCTGGTCCATATGGTTCAAGAGGAGCACATGGTGAACCAGGACTACCCGGGCTTCCTGGGATAAAAGGAACTAAAGGGGAGCCTGGTTTAGATGGAGCAAAAGGGTTTCCTGGGAAGCCAGGTTTACCAGGGCCTCCAGGCAGGAAAGGAGAGAGGGGTGGTCAGGGGCCAACTGGTTTGACTGGATACACTGGATCCAAAGGACCCAAAGGTATTAAGGGAGATCTAGGGATTCCAGGCAATTTCACCATGCTGAAAGGCAAGAGGGGATTACCTGGACTCAATGGAATATCAGGATTTCCAGGACCTAGAGGACATCAAGGTCAATCTGGGTTGCCTGGTAAACCGGGTCTGGATGGATTTGGTGGTGCCCCTGGATTTCAGAAAGGTTTCCCTGGCTTGCCTGGAAGAAGTGGCCCTCAAGGACCACCAGGCCCACGAGGGCCCAGAGGATATTCAGGTGACAGGGGATTACCAGGATACACTGGAGAGCAGggTGATTTAGGTTTCCCTGGACTAAATGGTCCCCCAGGCTACCAGGGGCTGCCAGGCAACAAAGGTGACAGAGGAGACTCTACTGGATGTTCTGGTCCCCCTGGACCAAAGGGGAATAAGGGCGATAGTGGATGCcaagAATGTCCTGCTGAATTTGGAGATCCAGGAGACCAAGGAAAGCCAGGACATCAAGGTCCACAGGGACAGCCTGGTCGTTCTGGTCCTTCCGGACCACCAGGTCCTTATGGATCTCAAGGAAATAGAGGTCCTCCAGGTCTTTCTGGTCCTTTGGGTCCTCCAGGCATTCCAGGGTTTCCTGGACATAAAGGGTATCCAGGTCTACCAGGTCAGAAAGGATTTCAAGGACCACCAGGTCTCAATGGTCTAAATGGAATCCCTGGTCCTAAAGGAGAGAAAGGCTGGTGTGGTAATGATATTGTCAGCCCTCCTGGGTTACAAGGTGATCCAGGAGACCAAGGCCTATCTGGTGACCCAGGAATCCCAGGAGACTTTGAGCTCGGGCCCAAAGGACATGTTGGATGTCCTGGAGACCAAGGTCCCCCGGGTATTCCAGGTCTACCTGGTGCCCGAGGTGCAAGCTGTGAAGAATTAATTCAAGGACTCATTGGGGACCAAGGACCAACAGGTTTTCCAGGACATCCAGGACTTGCagGTCCACCTGGACCTCCAGGTTTAGTTTTTTCTGGAGATCCTGGGGATGAAGGACCACCAGGACTACCAGGGAGAGATGGTGCGAGAGGTCCAGCTGGATCCCCTGGAGATATCGGCTTTCCTGGAAAACCAGGATCCAAAGGGCAGAAAGGACTTCCCGGTTTAATAGGTTTCCCAGGATCAGGAGGTTTCAAAGGACATGATGGACCACCAGGGTTCAAAGGTGAAAAAGGGACTGCAGGGGCCAGGGGTCCCAAAGGTCGTAATTGTACAGTGGTACCTCCCTCTCTGAACCGCCCTCAGAGTGGGCCACCAGGACGACCTGGGGCGCCAGGACCTACAGGATTCTCAGGAGTAGATGGACTCCCTGGAAATCCAGGAGCCACTGGTTCCAAGGGTCAGACAGGCCCTCGTGGGTTACCTGGGAAACCAGGAACTGCAGGATTTCCAGGCCCACCCGGAGATGCTGGAGATCATGGACAAGATGGTTTTGTGGGGCCACAAGGCCCACCAGGGTCCCAGGGTGAGCCAGGTTTTCCAGGGCCAGTGGATCCAGTGGGCTCCGGGTTTCTCCTGGTGATCCACAGTCAGTCAGAGGTGGTGCCGGAGTGTCCAGCAGGCATGCCTTTACTCTGGAGTGGTTATAGTCTTCTTTATTTGGAGGGCCAGGAGAGAGCTTATACACAAGACCTGGGCCGAGCTGGATCCTGTCTGCGTGTTTTCAGCACCATGCCCTTCTCCTACTGTAACTCTGCCGCCTGTCATTACGCCAGTCGCAATGACAAATCCTACTGGCTGAGCACCAATAACCCTTTGCCCATGATGCCCGTATCGTGTGGAGAGATCTACCAATACATCAGccgctgtgtggtgtgtgaagCTCCGGCTCCAGCCGTGGCAGTCCACAGCCAGAACACCAGTGTGCCCAGCTGTCCAATCGGCTGGAGCAGTCTATGGATTGGCTACTCATTTCTCATGCACACTGGCTCGGGTGATGAAGGTGGTGGTCAGTCGCTCACCTCATCTGGAAGCTGTCTGAAGGACTTCAGGACTCAGCCGTTTGTGGAGTGCCAGGGTCCACGTGGAACGTGCCATTTCTTTGCCAATGTCTACAGCTTCTGGCTGACCAGTGTGAGCCATAAGGAGGAGCAAGGCTTAGCACCACAGACTCGCACTCTGAAGACCACCTCGCAGCAGCGAGCGTGCATCAGCCGCTGCCATGTTTGCATGAAGCAGTGATGAACTGAAGTGGCCAGATCAGCGGCGTTCAttcccaaatgtcttcagtggcTTTCTTTTAATGAGCTGCAATAAGGTTACTGAGCTATAATAGTAATTGTTTGACTTTATTAGTAATTGCTAAGAAAAACATCTTTAGTATTCTAATCATTGTGAATTCACAAAAATTCATATCTTACTACAGGTTTACTTAAAGCtacttattttttatattctattatttatttatgtactacTGAATACTCCATTATTTGACTTCTTTATTTGGaccaaatatgaaatattagaGAAAATATAAAGGTTTTTGTCCACCCAGGCTtgcattatgattttttttatataattattattaataaactggtatgtgtgttttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU381857 lncRNA upstream 252340 18439167 ~ 18439866 (+) True G322462
TU381841 lncRNA upstream 259504 18432326 ~ 18432702 (+) True G322446
TU381819 lncRNA upstream 318323 18370727 ~ 18373883 (+) True G322429
TU381788 lncRNA upstream 348716 18338329 ~ 18343490 (+) True G322405
TU382184 lncRNA downstream 48640 18765192 ~ 18765602 (+) True G322738
TU382190 lncRNA downstream 94553 18811105 ~ 18811652 (+) False G322744
TU382191 lncRNA downstream 94632 18811184 ~ 18812335 (+) True G322744
TU382193 lncRNA downstream 95951 18812503 ~ 18812848 (+) True G322746
TU382194 lncRNA downstream 98062 18814614 ~ 18814817 (+) True G322747
XM_034314528.1 mRNA upstream 24634 18663158 ~ 18667572 (+) True cwc25
XM_026946308.2 mRNA upstream 54502 18585063 ~ 18637704 (+) False fgf12a
XM_026946146.2 mRNA downstream 30975 18747527 ~ 18754060 (+) True mffb
XM_026946147.2 mRNA downstream 30975 18747527 ~ 18754060 (+) False mffb
XM_026946325.2 mRNA downstream 40177 18756729 ~ 18763488 (+) True bpnt2
XM_026946330.2 mRNA downstream 74793 18791345 ~ 18797861 (+) True penka
XM_026946133.2 mRNA downstream 82651 18799203 ~ 18810210 (+) True sdr16c5a
TU381842 other upstream 269575 18415817 ~ 18422631 (+) False pex5lb
TU381774 other upstream 464973 18226562 ~ 18227233 (+) False si:ch211-162e15.3
TU381775 other upstream 465070 18226562 ~ 18227136 (+) False si:ch211-162e15.3
XR_003404718.2 other upstream 1060598 17570649 ~ 17631608 (+) False egfra
XR_004580278.1 other upstream 1208529 17478834 ~ 17483677 (+) False fuz
XR_004580282.1 other downstream 99457 18816009 ~ 18871360 (+) True slc44a5a
TU383181 other downstream 1722150 20438702 ~ 20440561 (+) True G323534
XR_004580310.1 other downstream 1921032 20637584 ~ 20659411 (+) False arhgef4
trnap-ugg_22 other downstream 2198852 20915404 ~ 20915475 (+) True trnap-ugg_22
TU383298 other downstream 2304637 21021189 ~ 21136847 (+) True G323615

Expression Profile