RNA id: XM_026946216.2


Basic Information

Item Value
RNA id XM_026946216.2
length 5270
RNA type mRNA
GC content 0.51
exon number 28
gene id egfra
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 17570649 ~ 17636609 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAGTAGAGCCTCCTCTCTCGCTCTTTAGCGCAGAAGACGAAGGAGGAGCTGTCAAAAGTTTTAAGTCGGGACAGATTCCGTGAATTGGGACAAAACTTCATACACACGcgctcacacagacacacacacatacacacgcacacacacacgtccgcCAACGGAGGCGCGTTCCAGTTATGGAGTAACACGATTACAAATCGAGAGATACTTATAAAGCGTTAAAAGAGACGAAATGGAGACTTTGGTCAAGACCGGATTCCTCTTTTCTTTGCTGATTTCCTTGGGCTCGTGCGCGACGCCGGAAAAGAAAGTGTGTCAGGGGGGGAACAACAGACTGACACTGCTGAGCACTGTAGATGATCACTACCAGAACATGGTGAAGATGTACAGCAACTGCACCGTGATCCTGGAGAACCtggaaatcacacacacctcgcACAAGCATGATCTGTCCTTTCTCAAGacCATTGAAGAAGTTGGAGGCCACGTTCTCATAGCTCTGAACAAAGCGCCAGTAATCCCACTGGACAACCTGCGCATCATCCGAGGTCACTCGCTGTACGATAATGAATTTGCCTTGGCAGTCCTGTCAAATTATAACCAAACCACAGCCAAAGGAGTGAACCAGCTGTCCCTCAACAGCCTCACCGAAATACTCCGCGGTGGTGTGAAGTTCGCCAACAACCTTTACTTATGTAACGCAGAGACCATCCAATGGGCCGACATTGTGAACCTGAAGAGCAATCCTAAAATAATCGAACATCGGAATGTTACCAAAGAGCTCTGTAAGAAGTGTGACCAAAGCTGTTACAATGGCTCGTGTTGGGCTCCTGGCCCTCAAAACTGCCAGACTTtcaCAAAGCTGGTGTGTGCTGAGCAGTGCTCCGGGAGATGTAAAGGCCCCAAACCCAGCGACTGCTGCAACGAGCACTGTGCGTCTGGCTGCACCGGCCCGAAACCTACAGACTGCCTGGCCTGCAGGGACTTCCAAGATGACGATACATGCAAAGATGCATGCCCTCCTCTCATGCGCTacaaccccaacacacaccagcTGGCCCCCAACCTGGACGGGAAGTACAACTTCGGGGCCACGTGTGTGAAGAAGTGTCCGCatAACTATGTGGTCACAGACCATGGCGCATGTGTGCGAGCGTGCAGTTCTGGAACTTACGAAGTGGACGAGGACGGGCTCAGGAAGTGCAAGAAGTGTGACGGTCTGTGTCCAAAAGTGTGCTCTGGACTAGGAGTGGGTCATCTAACTCACGTCATGTCAGTCAACGCTACCAACATCGATTCCTTCGAGAACTGCACGACTATCAATGGAGACATCTCCATCCTGAGGACAACGTTCCTGGGGGATAAATTTACTGGCACTAAACCACTGGATCCTGCCAGACtcaacattttcaaaacagtCAAAGAAATTACTGGCACTCTACTGATTCAGTACTGGGCACAGGACATGCCTTCTCTCAGTCCCTTCGAAAACCTGGAGGTGATCCGCGGAAGAACTAAACACCaAGGTACAGTGAGTCTGGGTGTCAGCGGGACTCCCATCACGCACCTGGGTCTGCGCGCTCTGCGGGAAATCAGCGACGGCGATGTAGCCGTCACGCACAACGCCAAACTGTGCTACAACAGTCCAGATCACTGGAAACGCCTGTTTAAATCCAACACGCAGAGTGTCCGACCCATGCAGAACGCAGACGCCGCTACCTGTGCGGCGCAGAACCGTACCTGTGATGAGATGTGTACGTCTGACGGATGCTGGGGTCCGGGGCCCACCATGTGCTTCAGCTGCGTGAGCTACAGCCGCAAGAAAAGCTGCGTGGCCTCCTGTAACCTCCTGGAGGGTGAGCCACGTGAGTGTGAGGTCAATAAGACGTGTCTGGAGTGTGACCCCGAGTGCAAGCCTCTTAACGGAACTCATACCTGCACCGGGCCTGGTCCTGACATGTGTAAGGAGTGTATTAACTACAAAGACGGCCCACACTGCGTGTCGCGCTGCCCGCAGGGGGTACCCGGGGAGAAGGACACGCTCGTGTGGAAATACCCAGACAGCAAGCGGGTGTGCCAGCTCTGCCACCCCAACTGCACCCAGGGATGCACTGGACCAAAACTTCAAGACTGCAAAGGCACAAGTGACACGAGCACGTCAATCATCGCCGCCAGCGTGGTCGGAGGGCTCCTGGCTTTCGTCATTCTCTGCCTGGCCGTGGCCGTTTTAATCAGGAGACGGAAGATCAAGCGGAAGAGAACGTTGCGCAGATTACTGCAGGAAAGAGAGttAGTGCAGCCGCTCACTCCCAGCGGAGAAGCTCCGAACCAGGCGCTGCTGCGCGTCCTCAAAGAGACCGAGTTCAAGAAGATCAAAGTGCTCGGCTCCGGAGCTTTCGGCACCGTGTATAAGGGTTTATGGGTCCCCGAAGGAGAAGACGTGAAGATTCCCGTCGCCATTAAGGTTTTACGAGAGGCCACATTGCAGAAAGCTAACAAGGAGATCCTGGATGAGGCCTACGTGATGGCGAGCGTGGAACACCCGCACGTGTGCCGTCTGCTGGGCATCTGCCTGACCTCCAACGTGCAGCTGGTGACCCAGCTCATGCCCTATGGCTGCCTGCTCGACTACGTCAAGGCGAACAAGGACAACATCGGCTCGCAGCACCTGCTCAACTGGTGTGTGCAGATCGCTAAGGGTATGAACTACTTGGAAGAGCGCCACCTGGTGCACAGGGATTTGGCCGCGCGCAATGTGCTGGTGAAAACCCCTCAGCATGTGAAGATCACTGACTTCGGCTTGGCCAAACTCCTCAGCGCTGATGAGAAAGCGTACCACGCAGATGGAGGGAAGGTGCCGATAAAATGGATGGCCCTTGAATCCATCCTTCACCGGACCTACACGCATCAAAGTGACGTATGGAGTTATGGTGTGACCGTTTGGGAGCTGATGACATTCGGGACGAGGCCTTATGATGGAATTCCTGCCAGTGAAATCGCCGGGGTCctggagaaaggagagagactCCCTCAGCCGCCCATCTGCACCATCGACGTCTACATGATCATGGTCAAATGCTGGATGATTGACGCAGACAGCAGACCAAGATTCAGGGAGCTCATTGCAGAGTTTTCCAAGATGGCACGAGATCCAACACGTTACCTGGTCATTCAgGGCGATGAGCGGATGCACCTGCCCAGTCCCACAGACTCCAGATTCTACCGCAGTCTGATGAGCGGAGTGGATCTGGACGAGGCCGTGGATGCCGATGAGTATTTATTGCCCAACCATGGCTTCTTCAGCAGCCCCAGCACGTCTCGTACACACCTACTGCACTCTGTGAGCCTGAACAGCAGCATCGGGTCGTGCCAGAACAGGAACGGGGCTCTCGTGCCGGTGCGTGAGAACAGCCTCATGCTGCGCTACATCCCCGACCCCACTGAGCGCATCCTGGATGGAGATTTCCAGCCTGCTCCAGAATACATGAACCAGAATGGCAGCACCGTTTTCTCGGACATGTCCAACCCCATCTATCAGCACCCTGCGCGTGCGGCCCTGGACGAGACCGAGGAGGACTACCTGAACTGCTTCAGAAACCCAGCGACCATCACTTCTCCTAACTCCGCCCCCGAGTACCTAAACACCTCCCACTCTCAGCTCTTTTCCCCCCTCACTTCCAGCCAGAAGCAGCCGAACGGGCACGGCTACATCGCGCAGAACAGCATCGACAACCCCGACTACCAGCAGGACTTCTTTCCGGTGGGGACCAAGCCGAACGGGCACCTCCCAGCCGCAGAGAACTCTGAGTACATGGGTGTGGAGGTGCACTAGCATGCTTCAGAAGGGTGTGGACTCTGTAAAAGCGATGTGACTGGACTTATGCAGGCAGGCTGTACTGCAGTGCTTTGGTGGAGGCTCTGAACTGCCATGAACTTGTTGGTTCATTTGAgagtttttaagtttttatgtttctttggAGCTGGACGGTGTGTAAGCCACAAACCTGTATGCCACAACAGACTGCAAATCAATCTCCGAATTTTAATCCGATTCACAGTCTAACTATGTACAGGATTTGAGCACATCCTGTATCATTAGATTTCAAGATCGAACTTGAAGCTTGCAGAAATTTGGCAATTTTAGGGCAGGTTTTCTcacttacacttttttttctgcacctGTGACTGGTTGAGTGTGAAAGCACTTCGAAAATGCAATCCAGGGAACACGTCTCTGGTCTGAAGGTGTGTATTGGACTGGGATCTCGTGCAGGCAGTCAGAAATTAAGATCACAAGCCATGCATAAATAATACACAGCTATTGTTACTATTACTTAATGACCAATTTCtccattttagcattttttttctatacaacTTCATAATTTGGCCCcatgccaattcccacccaccagctatTATACGACAGTTACCAAGCAAGAGGGTGAGGGCTAACACGTGCTCTTCCGCagacatgagctcacagacacgcacgattggctagtgtcgctgtgattgacagagaagagcgagtatgcccctcccacacaGAGAGCACGGCCAGGTTTACTCCCTTGGCTCCCGGACACAGATGGCCGTGGCATCGTCTGGTTTTGAACTCGCGATCTTACAACGATAGGGCGAAATCTTTTAGCCTccatttgagcttttttttctgtcagaagaaacagaagagtAAAGAGTTAAAGATGAGCTTAGCACAAAGCAAAATTTACTACTGGAAGTGAACATCCTTTTCACATCCCTGCATTCTTTCCTGTTcaagtgaatatttttttatcacttAAATTTTATCCACATCAGTCCTGAAACCTCATCATATTCTTTCCTGTTTCAGGGAAAGACATGTTGTGGCTCTGCAGAGAAGACAATGACCTTATAGTATATATGGAGCTAAAAACatcaaacatgaaaaatatttttgtatggaATTGAGCAGGTTTGAATAAAAGgctaaattaataatacatCAATTAATAATGTGCATATTGTTTcccatttcacacacaaaaaaaaacttcactcaCAGCATAACTAAAGTATCAACCTGGTCAGAAAAAACGTCTTCTGTATGAGAACCATGTCATGATTGCACCTTCCTTCAAACAGTCCCAGAATCAGATTTTTCTGCCTCGAATGTGAAAACGATTTTAAAAGAAACCCATCAAGAGAAGCTCACGAGCATCACGCGTTGTACAAACCAGATTGTGCTCTGTAGCACGTAGCTTTCAGTCTCTCATCAGCAGAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function
GO:0004716 obsolete signal transducer, downstream of receptor, with protein tyrosine kinase activity molecular_function

KEGG:

id description
K04361 EGFR, ERBB1; epidermal growth factor receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580280.1 lncRNA upstream 33490 17525571 ~ 17537160 (+) True LOC117599934
TU381408 lncRNA upstream 87006 17481913 ~ 17483644 (+) False fuz
TU381407 lncRNA upstream 88088 17481385 ~ 17482562 (+) False fuz
TU380963 lncRNA upstream 609916 16958745 ~ 16960734 (+) True G321704
TU380843 lncRNA upstream 677626 16892813 ~ 16893024 (+) True G321602
TU381490 lncRNA downstream 85329 17721938 ~ 17786701 (+) True G322146
TU381586 lncRNA downstream 217939 17854548 ~ 17855258 (+) True G322233
TU381693 lncRNA downstream 437720 18074329 ~ 18074748 (+) True G322324
TU381739 lncRNA downstream 562231 18198840 ~ 18199709 (+) True G322365
TU381778 lncRNA downstream 592786 18229395 ~ 18231463 (+) True G322398
XM_026946305.2 mRNA upstream 53283 17514697 ~ 17517367 (+) True c1ql3b
XM_026946271.2 mRNA upstream 63263 17487387 ~ 17507387 (+) True gpt2l
XM_034314525.1 mRNA upstream 63891 17487387 ~ 17506759 (+) False gpt2l
XM_026946285.2 mRNA upstream 86973 17478834 ~ 17483677 (+) True fuz
XM_026946286.2 mRNA upstream 86973 17478834 ~ 17483677 (+) False fuz
XM_026946215.2 mRNA downstream 4018 17640627 ~ 17665605 (+) True npc1
XM_026946259.2 mRNA downstream 205840 17842449 ~ 17853870 (+) True yme1l1b
XM_026946314.2 mRNA downstream 223702 17860311 ~ 17872029 (+) True rab18b
XM_026946277.2 mRNA downstream 329284 17965893 ~ 17979122 (+) True wacb
XM_026946278.2 mRNA downstream 329579 17966188 ~ 17979122 (+) False wacb
XR_004580277.1 other upstream 86973 17478834 ~ 17483677 (+) False fuz
XR_004580278.1 other upstream 86973 17478834 ~ 17483677 (+) False fuz
TU380835 other upstream 718226 16851445 ~ 16852424 (+) False LOC117599970
trnag-gcc_20 other upstream 1383609 16186971 ~ 16187041 (+) True trnag-gcc_20
trnag-gcc_19 other upstream 1385083 16185497 ~ 16185567 (+) True trnag-gcc_19
TU381774 other downstream 589953 18226562 ~ 18227233 (+) False si:ch211-162e15.3
TU381775 other downstream 589953 18226562 ~ 18227136 (+) False si:ch211-162e15.3
TU381842 other downstream 779208 18415817 ~ 18422631 (+) False pex5lb
XR_004580282.1 other downstream 1179400 18816009 ~ 18871360 (+) True slc44a5a
TU383181 other downstream 2802093 20438702 ~ 20440561 (+) True G323534

Expression Profile