RNA id: XR_003404718.2


Basic Information

Item Value
RNA id XR_003404718.2
length 3386
RNA type misc_RNA
GC content 0.54
exon number 26
gene id egfra
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 17570649 ~ 17636609 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGAGTAGAGCCTCCTCTCTCGCTCTTTAGCGCAGAAGACGAAGGAGGAGCTGTCAAAAGTTTTAAGTCGGGACAGATTCCGTGAATTGGGACAAAACTTCATACACACGcgctcacacagacacacacacatacacacgcacacacacacgtccgcCAACGGAGGCGCGTTCCAGTTATGGAGTAACACGATTACAAATCGAGAGATACTTATAAAGCGTTAAAAGAGACGAAATGGAGACTTTGGTCAAGACCGGATTCCTCTTTTCTTTGCTGATTTCCTTGGGCTCGTGCGCGACGCCGGAAAAGAAAGTGTGTCAGGGGGGGAACAACAGACTGACACTGCTGAGCACTGTAGATGATCACTACCAGAACATGGTGAAGATGTACAGCAACTGCACCGTGATCCTGGAGAACCtggaaatcacacacacctcgcACAAGCATGATCTGTCCTTTCTCAAGacCATTGAAGAAGTTGGAGGCCACGTTCTCATAGCTCTGAACAAAGCGCCAGTAATCCCACTGGACAACCTGCGCATCATCCGAGGTCACTCGCTGTACGATAATGAATTTGCCTTGGCAGTCCTGTCAAATTATAACCAAACCACAGCCAAAGGAGTGAACCAGCTGTCCCTCAACAGCCTCACCGAAATACTCCGCGGTGGTGTGAAGTTCGCCAACAACCTTTACTTATGTAACGCAGAGACCATCCAATGGGCCGACATTGTGAACCTGAAGAGCAATCCTAAAATAATCGAACATCGGAATGTTACCAAAGAGCTCTGTAAGAAGTGTGACCAAAGCTGTTACAATGGCTCGTGTTGGGCTCCTGGCCCTCAAAACTGCCAGACTTtcaCAAAGCTGGTGTGTGCTGAGCAGTGCTCCGGGAGATGTAAAGGCCCCAAACCCAGCGACTGCTGCAACGAGCACTGTGCGTCTGGCTGCACCGGCCCGAAACCTACAGACTGCCTGGCCTGCAGGGACTTCCAAGATGACGATACATGCAAAGATGCATGCCCTCCTCTCATGCGCTacaaccccaacacacaccagcTGGCCCCCAACCTGGACGGGAAGTACAACTTCGGGGCCACGTGTGTGAAGAAGTGTCCGCatAACTATGTGGTCACAGACCATGGCGCATGTGTGCGAGCGTGCAGTTCTGGAACTTACGAAGTGGACGAGGACGGGCTCAGGAAGTGCAAGAAGTGTGACGGTCTGTGTCCAAAAGTGTGCTCTGGACTAGGAGTGGGTCATCTAACTCACGTCATGTCAGTCAACGCTACCAACATCGATTCCTTCGAGAACTGCACGACTATCAATGGAGACATCTCCATCCTGAGGACAACGTTCCTGGGGGATAAATTTACTGGCACTAAACCACTGGATCCTGCCAGACtcaacattttcaaaacagtCAAAGAAATTACTGGCACTCTACTGATTCAGTACTGGGCACAGGACATGCCTTCTCTCAGTCCCTTCGAAAACCTGGAGGTGATCCGCGGAAGAACTAAACACCaAGGTACAGTGAGTCTGGGTGTCAGCGGGACTCCCATCACGCACCTGGGTCTGCGCGCTCTGCGGGAAATCAGCGACGGCGATGTAGCCGTCACGCACAACGCCAAACTGTGCTACAACAGTCCAGATCACTGGAAACGCCTGTTTAAATCCAACACGCAGAGTGTCCGACCCATGCAGAACGCAGACGCCGCTACCTGTGCGGCGCAGAACCGTACCTGTGATGAGATGTGTACGTCTGACGGATGCTGGGGTCCGGGGCCCACCATGTGCTTCAGCTGCGTGAGCTACAGCCGCAAGAAAAGCTGCGTGGCCTCCTGTAACCTCCTGGAGGGTGAGCCACGTGAGTGTGAGGTCAATAAGACGTGTCTGGAGTGTGACCCCGAGTGCAAGCCTCTTAACGGAACTCATACCTGCACCGGGCCTGGTCCTGACATGTGTAAGGAGTGTATTAACTACAAAGACGGCCCACACTGCGTGTCGCGCTGCCCGCAGGGGGTACCCGGGGAGAAGGACACGCTCGTGTGGAAATACCCAGACAGCAAGCGGGTGTGCCAGCTCTGCCACCCCAACTGCACCCAGGGATGCACTGGACCAAAACTTCAAGACTGCAAAGGCACAAGTGACACGAGCACGTCAATCATCGCCGCCAGCGTGGTCGGAGGGCTCCTGGCTTTCGTCATTCTCTGCCTGGCCGTGGCCGTTTTAATCAGGAGACGGAAGATCAAGCGGAAGAGAACGTTGCGCAGATTACTGCAGGAAAGAGAGttAGTGCAGCCGCTCACTCCCAGCGGAGAAGCTCCGAACCAGGCGCTGCTGCGCGTCCTCAAAGAGACCGAGTTCAAGAAGATCAAAGTGCTCGGCTCCGGAGCTTTCGGCACCGTGTATAAGGGTTTATGGGTCCCCGAAGGAGAAGACGTGAAGATTCCCGTCGCCATTAAGGTTTTACGAGAGGCCACATTGCAGAAAGCTAACAAGGAGATCCTGGATGAGGCCTACGTGATGGCGAGCGTGGAACACCCGCACGTGTGCCGTCTGCTGGGCATCTGCCTGACCTCCAACGTGCAGCTGGTGACCCAGCTCATGCCCTATGGCTGCCTGCTCGACTACGTCAAGGCGAACAAGGACAACATCGGCTCGCAGCACCTGCTCAACTGGTGTGTGCAGATCGCTAAGGGTATGAACTACTTGGAAGAGCGCCACCTGGTGCACAGGGATTTGGCCGCGCGCAATGTGCTGGTGAAAACCCCTCAGCATGTGAAGATCACTGACTTCGGCTTGGCCAAACTCCTCAGCGCTGATGAGAAAGCGTACCACGCAGATGGAGGGAAGGTGCCGATAAAATGGATGGCCCTTGAATCCATCCTTCACCGGACCTACACGCATCAAAGTGACGTATGGAGTTATGGTGTGACCGTTTGGGAGCTGATGACATTCGGGACGAGGCCTTATGATGGAATTCCTGCCAGTGAAATCGCCGGGGTCctggagaaaggagagagactCCCTCAGCCGCCCATCTGCACCATCGACGTCTACATGATCATGGTCAAATGCTGGATGATTGACGCAGACAGCAGACCAAGATTCAGGGAGCTCATTGCAGAGTTTTCCAAGATGGCACGAGATCCAACACGTTACCTGGTCATTCAgGCGATGAGCGGATGCACCTGCCCAGTCCCACAGACTCCAGATTCTACCGCAGTCTGATGAGCGGAGTGGATCTGGACGAGGCCGTGGATGCCGATGAGTATTTATTGCCCAACCATGGCTTCTTCAGCAGCCCCAGCACGTCTCGTACACACCTACTGCACTCTGTGAGCCTGAACAGCAGCATCGGGTCGTGCCAGAACAGGAACGGG

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function
GO:0004716 obsolete signal transducer, downstream of receptor, with protein tyrosine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580280.1 lncRNA upstream 33489 17525571 ~ 17537160 (+) True LOC117599934
TU381408 lncRNA upstream 87005 17481913 ~ 17483644 (+) False fuz
TU381407 lncRNA upstream 88087 17481385 ~ 17482562 (+) False fuz
TU380963 lncRNA upstream 609915 16958745 ~ 16960734 (+) True G321704
TU380843 lncRNA upstream 677625 16892813 ~ 16893024 (+) True G321602
TU381490 lncRNA downstream 90330 17721938 ~ 17786701 (+) True G322146
TU381586 lncRNA downstream 222940 17854548 ~ 17855258 (+) True G322233
TU381693 lncRNA downstream 442721 18074329 ~ 18074748 (+) True G322324
TU381739 lncRNA downstream 567232 18198840 ~ 18199709 (+) True G322365
TU381778 lncRNA downstream 597787 18229395 ~ 18231463 (+) True G322398
XM_026946305.2 mRNA upstream 53282 17514697 ~ 17517367 (+) True c1ql3b
XM_026946271.2 mRNA upstream 63262 17487387 ~ 17507387 (+) True gpt2l
XM_034314525.1 mRNA upstream 63890 17487387 ~ 17506759 (+) False gpt2l
XM_026946285.2 mRNA upstream 86972 17478834 ~ 17483677 (+) True fuz
XM_026946286.2 mRNA upstream 86972 17478834 ~ 17483677 (+) False fuz
XM_026946215.2 mRNA downstream 9019 17640627 ~ 17665605 (+) True npc1
XM_026946259.2 mRNA downstream 210841 17842449 ~ 17853870 (+) True yme1l1b
XM_026946314.2 mRNA downstream 228703 17860311 ~ 17872029 (+) True rab18b
XM_026946277.2 mRNA downstream 334285 17965893 ~ 17979122 (+) True wacb
XM_026946278.2 mRNA downstream 334580 17966188 ~ 17979122 (+) False wacb
XR_004580277.1 other upstream 86972 17478834 ~ 17483677 (+) False fuz
XR_004580278.1 other upstream 86972 17478834 ~ 17483677 (+) False fuz
TU380835 other upstream 718225 16851445 ~ 16852424 (+) False LOC117599970
trnag-gcc_20 other upstream 1383608 16186971 ~ 16187041 (+) True trnag-gcc_20
trnag-gcc_19 other upstream 1385082 16185497 ~ 16185567 (+) True trnag-gcc_19
TU381774 other downstream 594954 18226562 ~ 18227233 (+) False si:ch211-162e15.3
TU381775 other downstream 594954 18226562 ~ 18227136 (+) False si:ch211-162e15.3
TU381842 other downstream 784209 18415817 ~ 18422631 (+) False pex5lb
XR_004580282.1 other downstream 1184401 18816009 ~ 18871360 (+) True slc44a5a
TU383181 other downstream 2807094 20438702 ~ 20440561 (+) True G323534

Expression Profile