RNA id: XM_026946217.2


Basic Information

Item Value
RNA id XM_026946217.2
length 4205
RNA type mRNA
GC content 0.54
exon number 23
gene id wdr33
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18490937 ~ 18516265 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAAGACGAAGACTGAGGTGGGGGgaggaaagggggaaaaaaaaggcctCGAAGATGGCGGCCGCGAGTGATTTGCGGTGCATGTTGACAATCTGATTGCACGCTGGGGACGTTTTTGGTATTGTATTTTCGTTAAGAGAATACAGAAGAGTCGTGAATAAAAATAGCTTTATAGACTCAGTCAGCACTGGATATTTTTGCGGTGTAGCTGAAGGTGCACCATCATGGCGACTGACATCGGCTCCCCGCCGCGGTTTTTCCACATGCCTCGGTTCCAGCACCAGGCGCCTCGGCAGCTCTTCTACAAGAGGCCGGACTTTGCGCAGCAGCAGGCCATGCAGCAGCTCACCTTCGACGGCAAGCGCATGAGGAAAGCAGTAAACCGCAAAACAATCGACTACAACCCGTCCGTCATCAGATACCTCGAGAATCGTTTGTGGCAGCGGGATCATCGAGATTTGCGTGCTATCCAACCGGATGCAGGTTGCTTTAATGATCTTGTCCCTCCCGTCGGTATGCTTAATAACCCCATGAACGCCGTCACCACAAAGTTCGTCAGAACATCCACCAATAAAGTGAAATGCCCAGTGTTTGTAGTACGGTGGACCCCTGAAGGCAGGCGACTCGTAACCGGGGCCTCGAGTGGGGAGTTCACGTTGTGGAACGGCCTTACATTTAACTTTGAGACTATTTTACAGGCTCACGACAGCCCGGTGCGAGCAATGACGTGGTCTCACAACGACATGTGGATGCTGACCGCCGACCACGGCGGCTACGTGAAGTACTGGCAGTCCAACATGAACAACGTCAAGATGTTCCAGGCGCACAAGGAGGCGATTAGAGAGGCCAGTTTCTCTCCTACGGATAATAAATTTGCCACTTGCTCTGATGATGGAACTGTGCGCATCTGGGACTTTCTGCGCTGCCATGAAGAAAGAATTCTAAGAGGTCACGGCGCAGACGTTAAGTGTGTCGACTGGCATCCCACCAAAGGCCTGGTGGTCTCAGGCAGCAAAGACAGCCAGCAGCCTATCAAGTTCTGGGATCCAAAAACTGGCCAGAGTCTGGCAACATTACATGCCCATAAAAACACGGTGATGGAAGTGAAGTGGAACCTGAACGGTAACTGGCTGCTGACGGCATCGCGTGACCATTTATGCAAACTGTTCGACATTCGCAACCTGAAAGAAGAGCTGCAGGTGTTCAGGGGACACAAAAAGGAAGCTACAGCTGTTGCCTGGCACCCAATCCATGAGGGTCTTTTTGCGAGTGGAGGCTCTGATGGATCTCTGCTCTTCTGGAATGCAGGGGTGGAGAAGGAGGTGGGTGGTATGGAGATGGCCCATGAGGGTATGATCTGGAGCTTAGCCTGGCATCCTCTTGGCCACATTTTGTGCTCGGGGTCTAATGACCACACCAGCAAATTCTGGACCCGAAATCGACCAGGAGACAAGATGCGCGACCGCTACAACCTGAATCTCCTACCAGGAATGTCGGAGGACGGAGTCGAATATGATGACATGGAGCCCAACAATCTGGCCACCATTCCTGGGATGGGGATCCCGGAGCAGCTGAAAGCAGCCATGGAACAGGAACAAACCAGTAAAGAGACAGTACCGGAGGCTGAGATGAGCATCCCAGGGCTGGACTGGGGAATGGATGAGGTGATGCAAAAGGACCAGAAGAAACCACCAACAAAGAAGGTTCCCTACGCAAAACCAATTCCTGCTCAGTTCCAGCaaGCCTGGGCAGAGAACAAGGTGCCAACTATGGTTCCAGGAGAGCCACCCAAGGAGAGAAAGGATGAGAAGGTGGATGGAAAGAAGAAGACTCAGGCTGAGATTGAGCAGGAGATGGCTGCACTGCAGTACACAAACCCCATGCTGTTAGAGCAACTGAAGATTGAGCGAATGGCCCAACTCCAGGATCAGAGCATGCCACCTCCTGGAGGCCAGCCAGGCAACATGCCATCCTTCCCTGGGCAAGGAGGCCCCATGGCACCGCCTCCACAGGGCTTCCCTCAGTCAATGCCGCCCCAGCAGATGCCTCCCAACATGGGGCCTCCGATGGGACAAGGTGGCATGCCCGGCCCTTATATCCCCCCAGGTCAGATGGGACCTCCAGGGCCTTTGCCTCACCAGGGTCCTCCTCCGCAGGGCATGATGGGACCTCCAGATCTCCACGGACCTCCCCGCCACCCTGGACCTCACAGGAATATGGGGCCTCACGGCATGCCACCAGGGCCTAGGGGCATGCAAGGTCCTCCACCAGGTCCGATGCCTTCAGGACCACCTACAGGAGGCATGATGGGACCTCCACCTCGGGGTCAAGGGCCACCCCAGGGAGGCATGATGCATCAGGACATGCGCGGACCAGCACCTCATGGAAACATGATAGGTGCACAGGGGCCTCCGCCAGGAGGAATGATGGGGCCTCCACCCAGAAATCACGGCATGGGCAACATGCACGGAATGGGGCCTCCTCCTGGAGGAATGCACGGGCCTCCAAACAATATGCAGGGGCCACCGGGTAACATGCAAGGACCTCCTCCGTATATGCAGCAGGGCAAGCCGCCACACATGGGCGAGGGAAACAGAGGACAGTTCAACCAGGGACAGAATTCTGGCCCACAGTCAATGATGCATGGTCCTGGTGCCAAAGACGGACCTCGAGGGCCTCCGAACCACCACATGGGGCCTCCACCTGAGCACCAGGGCTCGGACGGAGGTTCTCAGTACTGGGCGGAGGACGGAGGGTACCAAGAGGGCTGGAGGAGACCGGGACAGGACTTTCACGGAGATCCCAGGGGCCACCGAGGAGGTTCTGGAGGGCAGTGGGAAAACCAGGAGAGGTTCCCTTCTCACGACGATGACTACGAAAGGTTTGATGATGGATATGAGGGTGCAGGGGATGGGTACGAGCAGAGGCCGAGGCGACCACCACATTCAGACGATTCttTCAGGAGAGGTGGAATGAGCGGACGTGGAGGCCGAGGAGGTTACCAGGATGAGTACGGAGGAGACGAGAGCTTTGATTCTCAGGACGAGATGGGCCAGGGCTGGGGGAATGGAGGGAGAGGGAGGCCACGTGGAGGACCACCGCGTGGAGGTGGTGTAGGAAGAAAGGGGCTTCTGCCAACTCCTGATGAGTTTGCGGCTCACTACGAAGGAGGAAGAAACCAAGAGGGTTGGGAGGGAGGGCGAGACTCAGgtcatGAGGGTTATCGGGACAGCCAGAGAGGTGACCATGGCATGCACGACAGCCCGTCTGCAGTCAGTAGAGAGCGATCTTCTTCTCTACAGGGCATGGACATGGCCTCACTTCCACCTCGCAAACGTCCCTGGCACGACGGCCCTGGCACCGGAGACATGGACTCACCCGGAGCTGGACCTGATGACCGAGGGGCAGGTCGGCCTCCATCACGTGATGACGTCGGTTACGGTCCTCCTCCATCCAGGGGCGGTAGAGGAGGATGGGTTCGCGGTGGCCGTGGAATGAGAGGAGGCCGGGGACGGTAGGAGGAGCTACACCCTTAAGACAGCAGGCTGGACACTGTGGATTGAAAAAAGGACCAAAGGAGCCACAAATCTGCTCCATCAGCTCCGGCTCATTGATGCCCATTTGCGCATTTTCTCCAGTTTGTCCTGAGGTTGTAGTGGCTCAGCTCTTCATGCTGCTCATAGGAACATGAGCCTGGTTGAGGCCTGTATGCTGTGACTGAGCATTTTTCAGCTAATAATTGCTCATGCTGACCTGAATTTGAAACTTGGACACACGTACATCACAGATATGAAAGACTAGCTCACACCTTTCACTTCATTTTGGGGATTTTTGAACGATCTTTCCCCAAATACTCCACGGTGCACTATAGAGTCTGTTTCTCACTCAGTTCTGATCTCACTCAATGTGGATGTTCACTGGACTGGCTCGAAGCTTTCCAGCTCCTGTTAAAGCTTCAAAAATGCACCATGTGCACACTTCCAATCCAGCGACTGAAATAAGGGACGGACTCTGAAACTTGGCACGTCCAGGcgtttaattttatgtaaaataataatagaaaaagtGATTCTGTAACATGAGCAGCTGACTCCTCAGGCTGCTGACTTTGTTTCAACATGTACAGTTTGTCAAAAGGTTGTCATattgttttgtgcatttttgtatGAGATGGCAATAGAAGTTTGTGCAAGATTTATATCAAA

Function

GO: NA

KEGG:

id description
K15542 PFS2; polyadenylation factor subunit 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU381990 lncRNA downstream 5457 18474248 ~ 18485480 (-) False LOC117599933
XR_004580279.1 lncRNA downstream 5509 18474224 ~ 18485428 (-) False LOC117599933
TU381989 lncRNA downstream 13261 18474248 ~ 18477676 (-) True LOC117599933
TU381965 lncRNA downstream 58194 18430135 ~ 18432743 (-) True G322552
TU381964 lncRNA downstream 60934 18429659 ~ 18430003 (-) True G322551
TU382292 lncRNA upstream 240108 18756373 ~ 18756647 (-) True G322827
TU382296 lncRNA upstream 248494 18764759 ~ 18764999 (-) True G322831
TU382315 lncRNA upstream 295745 18812010 ~ 18812377 (-) True G322849
TU382364 lncRNA upstream 426313 18942578 ~ 18956617 (-) True G322889
TU382356 lncRNA upstream 468931 18985196 ~ 18986806 (-) False mrpl37
XM_034314535.1 mRNA downstream 2521 18486279 ~ 18488416 (-) False si:ch1073-184j22.2
XM_026946313.2 mRNA downstream 2522 18486279 ~ 18488415 (-) False si:ch1073-184j22.2
XM_034314534.1 mRNA downstream 2522 18486279 ~ 18488415 (-) True si:ch1073-184j22.2
XM_026946300.2 mRNA downstream 110423 18373327 ~ 18380514 (-) True phb2a
XM_034314537.1 mRNA downstream 147093 18340023 ~ 18343844 (-) False ptmab
XM_026946288.2 mRNA upstream 5136 18521401 ~ 18526982 (-) False LOC113546416
XM_026946289.2 mRNA upstream 5136 18521401 ~ 18526888 (-) True LOC113546416
XM_026946284.2 mRNA upstream 10905 18527170 ~ 18534602 (-) False LOC113546413
XM_026946283.2 mRNA upstream 10905 18527170 ~ 18534428 (-) True LOC113546413
XM_034314526.1 mRNA upstream 18848 18535113 ~ 18540009 (-) False LOC113546415
TU381951 other downstream 96114 18394249 ~ 18394823 (-) True G322538
TU381602 other downstream 618829 17855329 ~ 17872108 (-) False LOC113546399
TU381420 other downstream 990105 17500065 ~ 17500832 (-) True G322080
trnal-uaa_4 other downstream 1409834 17081021 ~ 17081103 (-) True trnal-uaa_4
trnal-uaa_3 other downstream 1517167 16973688 ~ 16973770 (-) False trnal-uaa_3
trnav-aac_21 other upstream 230907 18747172 ~ 18747244 (-) True trnav-aac_21
TU382290 other upstream 237507 18753772 ~ 18755593 (-) True G322826
XR_004576919.1 other upstream 486974 19003239 ~ 19006379 (-) True tceanc2
TU382527 other upstream 558735 19075000 ~ 19077917 (-) False G323011
XR_004580317.1 other upstream 982296 19498561 ~ 19507197 (-) False kdm4ab

Expression Profile