RNA id: XM_026946221.2


Basic Information

Item Value
RNA id XM_026946221.2
length 6423
RNA type mRNA
GC content 0.48
exon number 14
gene id tnk2b
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18131956 ~ 18185148 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTGTGCTTACACTGACAAGCTGGGCAGCAGTATGCAGTGTGAAGAAGGCACTGAGTGGCTCCTGGAGCTGCTGATGGAGGTGCAGCTGCAGCAGTATTTCCTGCGTATCCGTGACGACCTCAACGTCACACGCCTGTCGCACTTCGACTACGTAAAGAACGAAGACCTCGAGAAGATCGGCATGGGCCGGCCCGGACAGAGACGGCTGTGGGAGGCGGTGAAGAGGAGAAAAGCGATGTGCAAGCGCAAGTCTTGGATGAGTAAGGTGTTCAGTGGGAAGAGGCCAGATGGAGATTTCCAGCCACAGGCGACCAGCACTTTCCGGAAGCTTTCGAGCACTCCTCCGCCTACAGACGGCCAGCAGCAGGCCCTCACCTGCCTGATCAGCGAGAAGGAGCTGGTGCTGTGCGAGAAGCTTGGAGACGGCTCGTTCGGCGTGGTGAAGCGTGGAGAGTGGGTCACGCCGGGGGGAAAAGTgTTGAACGTGGCGGTGAAGTGTCTGAAGACGGACGTCCTGAACCAGCCGGATGCTCTGGACGACTTCATCCGTGAGGTCAACGCCATGCACTCGCTCGACCACCAGAACCTCATCCGACTCTACGGAGTCGTCCTCACACACCCCATGAAGATGGTAACGGAGCTGGCTCCTCTCGGCTCTTTGCTGGACCGCTTGCGGAAGACCCAGGGCCACTTCCTCATCTCCACGCTGTGCCAGTATGCCATTCAGATCGCTAACGGTATGGCCTACCTGGAGACCAGGCGCTTCATCCACCGTGACCTAGCTGCCCGCAACATCCTGCTGGCTTCCAGCGAGCTCGTCAAGATCGGAGACTTCGGCCTGATGAGGGCGCTGCCCAGCAACGACGATCATTACGTCATGCAGGAGCACCGTAAGGTCCCTTTTGCCTGgtGTGCCCCAGAGAGCTTGAAAACACGCACATTTTCCCACGCTACGGACACGTGGATGTTTGGGGTGACCCTGTGGGAGATGTGCACCTACGGTCAGGAGCCGTGGCTCGGCCTCAACGGCAGTCAGATCCTCCATAAGATCGACAAGGAGGGCGAGAGGCTGCCGAAGCCCGAGGACTGTCCCCAGGACATCTATAACGTCATGCTGCAGTGCTGGGCACAGAAACCCGACGACAGGCCTACATTCGTGGCTCTCAGAGAGTTTCTGGTGGAGACCATGCCGACTGACATGAGAGCGCTGCAGGACTTCGACGAGCCCGACAAGCTGCACATCCAGATCAACGATGTCATCACAATCATCGAGGGCAGGGCAGAGAATTATTGGTGGCGAGGGCAGAACAAGCGCACACTGAAGGTGGGTCAGTTCCCCAGGAACGCGGTCACCTCCGTAGCCGGACTGTCAGCTCATGACATCAGCCggccactgaagaacagctTCATCCACACGGGCCACGGAGACACCAACCCTCACCGCTGCTGGGGCTTCCCGGATCGGATAGACGATCTGTATCTGGGGAACCCCATGGACCCTCCGGATGTCCTCGGGCTGGATCTGAATGCTCCCAGGCCCACGCAGCTTCCTGGGCGAGCCAAAAAGCCGAACTACGACCCAGTCACAGAGGATGAAGACCTGACGGCCTCCGGCCTGAGGCGCCTCTCATTAAAAAAGCCCAACTCAAAGGGCCTGAAACTGAAGCCGTCAGCTTGGGTTTCAGCCACAAAGCAGAGCGATCGATCCATTTATGGCCTCCGAAATCCAGGAGGTGGTACTCCCACTGAAGTCTCTCTTATAGACTTTGGGGAGGAAATGTTCTCTTCTACCCCCTCTCCTGTTATAGAGTCCCAGGTCCCTAGTCTCGCTAGATTGGCCCTGGAGGCAGAGAATATCTTGGACTGTACCCCACCCCAGAGTCCGTCCCGGTCTCTGCCTCGGCCGCTCCACCCCACCCCAGTGGTAGACTGGGACTCGAgacctcttcctcctcctccagcgTATGATGACGTAGCACAGGACGAAGACGACATCGAGGTGAGCTCGATCAACAGCACAGAGATAAGAGTCCCTAACGAACCAGGCTCTCCATGTGCCCCCTGCACTCCTGCATATGAAGATAAACTCCGATTAGAGGATGATCTCTTCCTCCCCAGCAGGCAGAGCCGGTCTCGCACCTTCTCGCAATCGGCCGAGATCTTCCAGGAGCTCCAGCAGGAGTGCATGAGGCATCTGAATGTCCCAGTAGGTTCCATAAGTCCCGATCCCTACCGTCAGATCTTCCTGTCCACCTGCGAGGACAAGCCCCAGGTCCCACCTCGAGTCCCGATCCCACCTCGACCTCCAAAAAGCACAGGAAGCGACTCTGCCCGCTGGTCACGTGACCTGTCTCCAGCCTCGTGCGGCGAGGACGAGAAGGAGCGTCCGCCCCAGATCCCCCCCAGGGATCCGCTGTCTCAGCCGGGCTCTCGCACGCCCAGCCCCATGAATCGTACCACACACTACCTCTCCACCTCGCCGGGCAAACTGATGCCCACCACACAGAGCTTTGCGTCTGACCCCAAATATGCTGCGCCCAAAGTCATGCAGGCCCAGGGCAAAGACAAGGAAGCAGGCAAAGGACCCTGCATACTGCCCATCGTCCGAGACGGCAAGAAAGTGAGCAACACGCACTACTACCTGCTGCCCGAGAGGCCCACGTACCTAGACCGCTATGACAAGTTCTTCAAAGAGGCCGAAGAGGACGAGAGGAGGCCGGTCAACACGGCTACAGTCCGACCCATGGTGCAACAGCAGGGAGACACAAAATCGAACTTCTCCTGTAATAATAACAGCAGCCTTCCAGCCAGAGCAGGCATCAGGAACTCCCTGAGCCTGAGCAAAGTCGGCACTGAAGGGCTGTGCAGTAGGGCGGAAGGAGCGGCTAATCCTGACAGAGTTAAACTGGTGCAGGAGGCGGTGCACGGAGTGACGATTGAGGAGTGTCAAACAGCCCTGCAGAACCACAGCTGGAATGTGCAGAAGGCTGTGCATTATCTGAAGGTGGAGCAGCTCTTCTGTCTGGGTCTGAAGTCCAGGGTGGAGTGTCATAAGATCCTGGAGATGTGTGACTGGAACCTGGAGCTGGCCAGCACTCAGCTTTTAGACTCTTACGGCTCAGTCAAACAGAGgcGATAAGGAAACTCCACAGATGAGCACATCTTCACCTTCGTCCTCATCCTCCCCTCATCAGAGACTGAACTGAAGGCTGTCTAGAGAACTCTAGGAACGAGGGTCTCCCCCTCCCAAAGCTCGAGTTCCCTCTCTCTGCTATACCGAGGGACTCgcattgtgtctgtgtgtatcctCAGAACCGAGCGTCTTCCTCCAGAACCCCTCCTCAAGGTGCACTACTGAGTTCAGAGGTCAAATGGctattgaattttatttgctcTCTGTCTTGAACAGAAAAAAGGTTGAAACCAAAGTGCTGCTGGTCcgttcaaggtttttttttttttttttttttttttaattttatacagagatttatttgataaataataaaaggagATTATCGGATGGAGAACTCTGAGATAGTGTAAAAGTAGTGTATATATTTTCAGAGTTTAGTTGTAGAGTTTATATGTTTGTGTCAGatggttctttttttaatgtccatTTCGGTCAACTGCAACAAGTTTATTGAATTTGTTTCCGTGTTGTGTTCTTTCCTTATTTCTTTAGTTgtcctgttattttttttttgatattccGTCCAAAATTGTTGTGTTAAAACCTTTCCTTACCCTGCGTTTGCAATAGCTAGTGATGAAGTTCCCTATTTCCTTCAATTTGCATCAGATTTCTAGCAATAATGCAAATTATTTGTGACGTTGTAATGCGAATACTTTTAATAAGACGTGTTCCTCATTTCCTCATACGTTATCATCACATCTATGTAATGTCATCAGTGTTTAATGGAATGTTTGGGGAATAATTTAATCCCAGACGAGCACTCTTAATAGTTTGTTTgcacagctagctaactttaaaACAGCACCTTTTTAAAACGGATTTTGCATTGCGCATTTCAGTTCATAACTATGAAACCAAGTCcttgatttattaaaaatattgaagCAGCTAGGTAGTATTGTGCTTAGCCTAGCTAATCTTAGCTAGCTACTCATACTCATATAACCCTTGGTATACACTGATGTCATCAAGTGGAAGTGATTGGTAGAAGTAAATGCTGTGCCCAGAACAACAGACGAATCCATGATCATGTActatttaggggaaaaaaatcacggTCACTGAAGCAGTAAAGCAGAAAATCCAAGTGACCTTTTTGACCAAAATTACAGCTTGGTTTGTTCAACGTCCACAAAATTCTCTATGTGACATTAGCAGAAGTAACACTGTAGTACATATAAATTCAGCAGGCTATACAGGGCTAGCTTGTGTTTCCCAAGACtaggataaagaaaaaaagctagCTAAAATAATAAGGTATGGCGAGATACCTAGCTAGTTACGTGCATTAATACTGACACAAACAAGCATAATTTCTAAGTAGCGGAGGATTCGGTGTGGCTGTAGTCATTACCGTTATCTAAGGCCTTTAACAAAAAGTCAACAAGTCGTTGGGCAGCGTTCTGCTATGAGCCGTGGGGCTTTGTTTTCACATCACACGTGAATATTATTCTAATCTGGCTACAACATCGATGTGCGTCAGAGCGCATTATCTATAAAAAGACATACCaaataaaaccttttgtttTGGGAAAATCAGTAatgagtcattttttttctttctctggttgttgaacgagagaagggaaaaaagtaGGCCAAGTGTGCCTTCTTTTCAACCAGGCAACTATCAATAATAAACGAATAGCCTGGGCACTTAATCTTGTCTTGGACACcgaggctactgatttgtccaacCCTGCTATATATTTGATATTGGATTCTGGATATATTCTTAGAACATAGAAGCTAGTCACCCAAAAGAAACACACATGGATCGACAGCAGTGACATGTTGTTCGTTAGCGTGAACACAGGGTTAAACTTAAAGGGCAAAAAATTGCTTACACCTCCTCCATGTGCCTCCGTGTGCAGTACCATACGTCTGTATGTTTCCAGACTGAACACAAAGAGAGTGGAGCTGATAGAAATCCTACAGCTCAGGTGGTCCGTTCCATGGACAGCGCATTCGCACAGCTTTAATATGGTGCAGTGTTGAGAAGCACAATCAAGTGAATGAATGgccttaaaggaatactccagacTTCGATTAGTGAACATTCTCATGACATTCTTTTACACTACAGATGTGATAGATAAAGCTGAGGTTGGAAAACACTTGTcaagtattcctttaattcaaaacaaaaatctacATGCTGTTACTCCATGATCATTGTTTGCACTTACCTTACCTTGCTTTCGTGTGTAGAAAACCATTGAGTGACCATAAcagtcatgcttttttttttgtttacccttctaaccaatcaggtTGCAAGATGGAGGGCAAacgagaaaaacaaacatggagtaCAAAGTCCTAGTCTTATTAGGGAGTGAATATGCTGGATGAGAACATTTCTAGTGTTGCAGTGtaactatataaaaatatatatatatatatatatatatagtcgcACAAGCGGCTCAAATACTCTAGATTTTCCGTCTCCACAGTTACAGCAAAgaacctcctcatcaccagagctacaccaatctttatttcatctgcattattgatgatgataaaaCTAATCTAGAgagcaagctaggctagttagagagctgatactagctaggactgcttatggttacagtgtgtatgtcaCATGTATCATGttggttaatgtttttttttgttttttttccctgtatatCAGCACAGAAAGTGTTCTGGCAAATGttctatttaaaacaaaaagtatgAAAGCACCCTGAGATGTTAAAAAGCGCTTCTGCCAGTTATTTTCTTTTCCAGGTATTTTCTGACTGCTTTACAGTAATAATCAGTTGGACGTAGCTGTTAGGGACCAGCGTTAGAGATACTGAAACACAATCAGCCACATAAAGCAATCTCACACTCATTGTGTAGGTGACTCCATCAGTCTTGGACTCATTTTATTCCCCTgacagtgtgtattgtgttggaTTCACTACATTAGTGGTCTAGCACtgaataatcagaataaacacGTAGTCACCCCTGATCAGACAGATTAATTAGCCTCCATTATGCTGTATTTATGAGACTGAAATGACCTTGTGTTGTTCTTTTCACACGGTGTCCTCCTCTTCCAGCTTTAGCAAACTGTTCGCTCTTCCATGTTCCTGTAcctgtattttattgtgtttaaattcTGTAAAAGGTATGTTCATGCAGATATagaatttatatacattatatataaatacatattttttattaaaattaacaattttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU381679 lncRNA downstream 139088 17990764 ~ 17992868 (-) True G322310
TU381603 lncRNA downstream 259848 17867836 ~ 17872108 (-) False LOC113546399
TU381604 lncRNA downstream 278119 17852633 ~ 17853837 (-) True G322250
TU381605 lncRNA downstream 281584 17849152 ~ 17850372 (-) True G322251
TU381412 lncRNA downstream 650571 17480442 ~ 17481385 (-) True G322072
XR_003404719.2 lncRNA upstream 193490 18344046 ~ 18346844 (-) True LOC113546439
TU381927 lncRNA upstream 195166 18345722 ~ 18346812 (-) False LOC113546439
TU381963 lncRNA upstream 276177 18426733 ~ 18427069 (-) True G322550
TU381964 lncRNA upstream 279103 18429659 ~ 18430003 (-) True G322551
TU381965 lncRNA upstream 279579 18430135 ~ 18432743 (-) True G322552
XM_026946159.2 mRNA downstream 27151 18073134 ~ 18104805 (-) True tmtopsa
XM_034314530.1 mRNA downstream 27151 18084419 ~ 18104805 (-) False tmtopsa
XM_034314531.1 mRNA downstream 27151 18085007 ~ 18104805 (-) False tmtopsa
XM_034314523.1 mRNA downstream 179355 17910395 ~ 17952601 (-) False LOC113546406
XM_026946256.2 mRNA upstream 35352 18185908 ~ 18194006 (-) True LOC113546402
XM_026946254.2 mRNA upstream 44363 18194919 ~ 18211462 (-) True LOC113546400
XM_026946255.2 mRNA upstream 44363 18194919 ~ 18211446 (-) False LOC113546400
XM_026946232.2 mRNA upstream 79398 18229954 ~ 18314989 (-) False dlg1l
XM_026946233.2 mRNA upstream 79398 18229954 ~ 18314989 (-) False dlg1l
TU381602 other downstream 259848 17855329 ~ 17872108 (-) False LOC113546399
TU381420 other downstream 631124 17500065 ~ 17500832 (-) True G322080
trnal-uaa_4 other downstream 1050853 17081021 ~ 17081103 (-) True trnal-uaa_4
trnal-uaa_3 other downstream 1158186 16973688 ~ 16973770 (-) False trnal-uaa_3
XR_003403441.1 other downstream 1512222 16619633 ~ 16619734 (-) True LOC113533663
TU381951 other upstream 243693 18394249 ~ 18394823 (-) True G322538
trnav-aac_21 other upstream 596616 18747172 ~ 18747244 (-) True trnav-aac_21
TU382290 other upstream 603216 18753772 ~ 18755593 (-) True G322826
XR_004576919.1 other upstream 852683 19003239 ~ 19006379 (-) True tceanc2
TU382527 other upstream 924444 19075000 ~ 19077917 (-) False G323011

Expression Profile