RNA id: XM_034314513.1


Basic Information

Item Value
RNA id XM_034314513.1
length 3684
RNA type mRNA
GC content 0.52
exon number 29
gene id si:ch211-106n13.3
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 17400391 ~ 17427264 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCATCCCTCCTTCCATCCCACTGCACGTCTGCACAGTGACTTGTGTTCATCATGAGCACAGCTGGTCAAATTTTTTAGTTACTGTTCTTGGAAGTTGCAGTGATTTTGGAGTTCTAACAAGAGGAATTCTTCCCTTTTGCCAGACCCAGTTTTGATGCCACACTGACCTATAATGAGGAAATGTTATTTGGGATCGCTAATTGTCTGTCTATTCCTGACCCACACCAAAGGACATGATCAGGAGGACCGTCAAGCTGGTTTTCCTGGACTTGCAGGTTGTAGCACCACATCCAATGACTTGGTGTACATCATTGATGGCTCGTCAAGTCTTGGGATTGCGGACTTCAACACAGCCAAGCGCTGGCTCATCAACATCACCAGCGGCTTTGATGTGAGCTCCCGACACACTCAGGTGGCTGTGGTCCAATACAGCGATACGCCACGCCTGGAGATCCCTCTTGGGAAGCACCAGGACACTCAGACCCTTCTGAGGGACATTGCTGCAATCTCCTACCTTGGTGGCAAAACCCAGACAGGCCGTGCCATTAAGTTCGCCACAGACCATGTGTTCTCTGCGCTAAACCACACCACAAAGACCACCAGGAACCGCATTGCTGTGGTTCTGACGGATGGCCGGTCACAAGATGATGTGGTGGATCCAGCGATGGAGGCCAAAGCACAGAACATTGCTCTGTTTGCTGTGGGCGTGGGAGATGAGATCACCAACGCTGAACTGATGTCCATGGCCAACAAGCCTTCTTCCACTTATGTGCTGCATGTAGAAGACTACACCTCCATTGGGAATATAAGGGAGGTGATGGAGCAGAAACTCTGTGAGGAGTCGGTGTGTCCTGTGAGAATCCCTGGTACTATCAATGGGCAGAAGGGCTTTGACCTGATGAGTATGATGGGGATTGAGGTAGTGGCTAAAAAGGTCCAGGGATCTCTTGTATCAGAAGGTGCTTACCTCCTCAACCCTCGCTTGAACCTTACTCGCAGCACCAGAGAGATCTTTCCAGAAGGCCTGCCTCCTTCATATGTGTTTGTGGCCACACTGCGGGTGAAGAACCCAGTCCACCGCATGAAGTTTGACCTCTGGAGGGTGCTGTCTGAAGAAGGTGTCAGGCAAGTCGCAGTGACTTTGAATGGCCTAGACAAGTCAGTCACCTTTACCAGTACCAGCACAATGAAGAAAGAGCAGACTGTCATATTTAATGACCGCGGCATTAAGAGGCTCTTTGACACAGACTGGCACCAGCTGAAGTTGTTGGTGAGGCCCAAACGTGTCACCTGTTTTGTAGATGATGCATATGTGGAGGAGCAGCTCTTGGACGAAGGTGTCCCCATCTACATCAACGGGAGGACACAAGTGGCCAAAAAAGTCAACATAGAAACTACTGTGCCAATCGTCTTGCAGAAGCTTCGGCTGTACTGTGACCCTCtgcagagcgagagagagacagcgtgTGAGATCTACTCTGTGTGTCCTACTGATCGTTCTCGTCCTGTGGAGGGCTGTGATTGCCCCAGTGGTAAACCTGGCCCTGCAGGCCTACCTGGACCCATGGGCTTCAGGGGAGAGAAGGGTCGAGAGGGACCTCCTGGCCCAGACGGAAAACCCGGAAAGCAGGGAGAAAGGGGTCCACCTGGCCAGCCTGGAAGAGACGGtgagaaaGGTGAAGCAGGTCAACCAGGACAAAAAGGGGAGAGAGGATTGGCTGGTGCCAAAGGTGATATGGGAATCCAAGGGCTACCAGGACAGCCGGGCCCTCCAGGACCAACAGGCCCTGGACTCTCAAAATGGAATGATTATGGAGTAGAAGCAAGCAAGGGAATCCAATTCCAGCAAGGGGAAGTAGGACCCCCAGGGAACCCTGGACCACCGGGGGAGCCTGGGATACCTGGAAATGATGGACTTCCAGGACAAGTTGGACTGAAGGGTGAAAAGGGGGATGCTGGGGAGCCTGGAACCGATGGACAGAACGGTATTCCGGGCATGAGAGGACTTCCGGGTGAAATGGGGCCTGCTGGACCTCAGGGTGAACGAGGCTTGCCAGGGTCACCGGGTTCAGTGGGAACAAAAGGACCTCAGGGACCCCCAGGCCCAGTGGGACCACCCGGTCTAGAAGGTCCAGTTGGTCCAAAGGGGAACTCAGGGCCTCGAGGGCAGGACGGCGTCTCAGGTGCCCCTGGCACTAAAggATCACAGGGCGAACCTGGAGTTCCAGGGCCTCAAGGCATCATGGGTCTACCAGGTTTAAAAGGCCATAAGGGGGAATCAGGAGAGCCTGGTCCGAAAGGAAGTCAGGGAGAGAAAGGCAGTGAGGGATCATCTGGGCTCCCTGGAAAACCTGGTGAGCCAGGCCTCAGGGGGAGCAAAGGAGAGcgAGGTGTAGCTGGAGATCCGGGAATCAGAGGGGCTGATGGGAAAAAGGGAGAAATTGGTCTGATGGGACCAGGAGGACCGCGAGGATTTCCAGGAAACGATGGGTTGCCAGGGCAACCAGGTATCCCAGGGTCCCCAGGAAAACCGGGGAAGACGCCTTCAGAAGATCACTTGATGAAGATTTGTGCATCAGTGTTGCAGGATCAACTGCCACAGCTCCTTCAGGCGATGTCCTCCAGACGCTGCCAACAGTGTGAGACCATTAAGGGACCCCCAGGTGATCCAGGCCCCCCTGGACCCCAAGGCCCAACTGGAACTCAAGGCTATCCTGGCAGACCTGGAGCTCAGGGATACCCAGGACAACCAGGGGCGATGGGGCCAGTGGGCCCGAAAGGTGAAATTGGACCAATGGGCATGAAAGGTGCCAAAGGAGAGAGTCGCAATGGGCTCCCAGGTCCACCTGGCCCACCAGgtTTGCAAGGTCCTCGTGGACTGGATGGTGAAGGATATCAAGGGCCCCCAGGGTCTACAGGGAAACCTGGCTCACCTGGTATCCCTGGAAAACGAGGTCCTCCGGGAGCTGCCGGTGTTTGTGACCCATCCTCCTGTTACATGGGTTACGGCAGCCAGCAAGGTCACTTCAACAAAGGGCCCGACTTCTAGCAAACTACCTTGATCCACACTTCGTATTGACTTTTAAGGGCCTCCATGCTCCTGAGCCCAAACAGAGGCCAAACGGTCTGAGGTGACTTGTGTGTGTTGGCTTGTGTTTCGTTTggatttatttgatattaaccTCTGTATTAGGCCCAAATAGAGGGCTTAGAGTTTGAACGTGGCAGTTTTTACTTGAGATTATTTGTCAAACCTACTACTTTTGGTTGGAAGCTAGAATAACGATCATGTAATGTAGCAGCATGCAGATGTTTGCTTTGTGGCAGCCTTTTAATATATATGAGAATAGAGTAATGAGAAAAGTTAATCTGGAAATCAAAACTAGGACAACAAACCATTTCTGAGTAAGATAAGATAGTTTCATATTGAGTCAACTGGACGCAACCGCACTTGTTTCAAACCCACATTGAGGTGCTCGCTTTCGTGAATtgcattttattgtaaatagaCATAGGTGTTGCACTGCCTTTTGAAATACTACCTCTGTATTAGATGCGAAGTAGTCCAACAGCTAGACTGTAACAATATTTTGTTATCAAAGTGTTGGCCGATATCTCAGACTGCTCAGGATATctcttggtttaaaaaaaaaaaaaagctcattctTTGTGTTATGGATCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380963 lncRNA upstream 439657 16958745 ~ 16960734 (+) True G321704
TU380843 lncRNA upstream 507367 16892813 ~ 16893024 (+) True G321602
TU380827 lncRNA upstream 540813 16792714 ~ 16859578 (+) True G321591
TU380813 lncRNA upstream 607953 16792128 ~ 16792438 (+) False LOC117595733
TU380818 lncRNA upstream 610784 16789186 ~ 16789607 (+) True G321585
TU381407 lncRNA downstream 54121 17481385 ~ 17482562 (+) False fuz
TU381408 lncRNA downstream 54649 17481913 ~ 17483644 (+) False fuz
XR_004580280.1 lncRNA downstream 98307 17525571 ~ 17537160 (+) True LOC117599934
TU381461 lncRNA downstream 161808 17589072 ~ 17666213 (+) False npc1
TU381471 lncRNA downstream 203950 17631214 ~ 17631512 (+) True G322127
XM_034314560.1 mRNA upstream 39094 17348910 ~ 17361297 (+) True exoc3
XM_034314559.1 mRNA upstream 39921 17350747 ~ 17360470 (+) False exoc3
XM_026946126.2 mRNA upstream 40418 17348911 ~ 17359973 (+) False exoc3
XM_026946125.2 mRNA upstream 40418 17348911 ~ 17359973 (+) False exoc3
XM_026946118.2 mRNA upstream 52907 17323911 ~ 17347484 (+) True ahrrb
XM_026946294.2 mRNA downstream 646 17427910 ~ 17429725 (+) True ccr12a
XM_026946214.2 mRNA downstream 6654 17433918 ~ 17477821 (+) True hecw1b
XM_026946285.2 mRNA downstream 51570 17478834 ~ 17483677 (+) True fuz
XM_026946286.2 mRNA downstream 51570 17478834 ~ 17483677 (+) False fuz
XM_026946271.2 mRNA downstream 60123 17487387 ~ 17507387 (+) True gpt2l
TU380835 other upstream 547967 16851445 ~ 16852424 (+) False LOC117599970
trnag-gcc_20 other upstream 1213350 16186971 ~ 16187041 (+) True trnag-gcc_20
trnag-gcc_19 other upstream 1214824 16185497 ~ 16185567 (+) True trnag-gcc_19
trnag-gcc_18 other upstream 1216249 16184072 ~ 16184142 (+) True trnag-gcc_18
TU380434 other upstream 1268027 16131335 ~ 16132364 (+) True G321257
XR_004580277.1 other downstream 51570 17478834 ~ 17483677 (+) False fuz
XR_004580278.1 other downstream 51570 17478834 ~ 17483677 (+) False fuz
XR_003404718.2 other downstream 143385 17570649 ~ 17631608 (+) False egfra
TU381774 other downstream 799298 18226562 ~ 18227233 (+) False si:ch211-162e15.3
TU381775 other downstream 799298 18226562 ~ 18227136 (+) False si:ch211-162e15.3

Expression Profile