RNA id: XM_026946240.2


Basic Information

Item Value
RNA id XM_026946240.2
length 4340
RNA type mRNA
GC content 0.49
exon number 25
gene id dlg1l
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18229954 ~ 18314989 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGTCACGTGACCGTCTCCCAACCCCGGGACGCCATCTTGGTGGAAAGTTTGGAATTTGTGACACATAGGggaagaagaagggaaaaaaaacaggaggaggaggaggaggaggaggtggagataACGAGAGAAGTTTGACGCTTTGCAgaagacgttttttttttttggaaaaaaaaatcttcaggataTTTTAAAGTTTGGAAAAACGACGTGTGTTATAAAAGTGCGGATTTAAATCGCCAGTGTTGGGAGAGTGTTTGCTTGgtcagtttgttttgttttgttttgttttctgtttcttttttggaGAAAGCTTTCCACGACTGGCCACCACacatcactttctttttctaaacACTTCACGCAGTGTAGAAAGAATGAGAAACTGATGCTCTGTGCGGGTGAAACACGCTTTTTTCCTGCATGTTTGAATGGAAATTAGCGTGTGGGGAAGAGCTGAACATTTGGACCGTCCCGGCTTCCCTTTTCCGCCGCTGTCAGCTTTCAAAAGTGACGCTTAGCCGAGCTAGTCGTTTTAGCCTGACCCGGACCTGGAGGACACAGCAACTCCGACTCGCCTTTTCCAAACATCCCCACAACTCTTTCACATGTTTACACCCGGATTTCATGTCGAAGGCTTGTAAGTTCACCGCCTGACACTTTGGGAGTCCGACCGAACCGACCATGCCGGTCAGGAAGAAAGATGCTCAGCGGGCTCTGTTGCTCTTGGAAGAATACCGGACGAAACTCAACAACACCGAGGATCGACAGCTGAGGCACTCCATTCAGAGAGTGATCGACATCTTCCAGAGTAACCTCTTCCAGGCACTCATAGATATCCAGGAATTTTACGAAGTGACCTTATTGGATAATCAGAAATGCAGCGACCCGATGAAAGGAAGTGCCGGGCCGGCCGCCATGAACCTGTGGGATTTCTCCAGCCTCCAAAGTCCGACCGGTACTTCAGACACGATGCCCAGCATCAGCACCAGCATAGAGAAGTACAAACACCACGATGAGGACGGGTCTCCCCAAGAGCAGAGCTCGCCTCAGCTCACCGACGAGACGCCAGGCCCTGAGCTTGTCCAGGTGGCCGAGAAGAACATCTCTCAGATCGAAAACGTCCACGGCTACGTGGCCCACGCACACATCTCCCCCATGAAGGTTGAGTCTCTGGAGTGCATCTTCGACGGGCCGCCCACGGTGGCGAGCGAGGAGAGCCCTCTCCTCAGCCCCTCCACCCCGTACCAGCAGACAgatgccacccctccctccaCTCCCATAATCCCCGTGATCCCAATCTCGCCTGTCCCTGCGGAGGCCGCTGTCAGCCCTTCACCGACGTCACagGCAAATCCTCCTCCTGTCGTGGTGAATACGGAAAGCCTGGATTCAGCGCCATatGTGAATGGCACAGAAGCAGACTATGAGTATGAGGAGATTACGTTGGAGAGGGCAAATTCTGGGCTGGGCTTCAGCATCGCCGGTGGCACAGATAACCCTCACATCGGAGAAGACCCCAGCATCTTCATCACCAAAGTGATCCCAGGGGGCGCTGCTGCTCAGGACGGGAGACTTCGGGTGAACGACGTTATCCTGCGTGTCAACGAGGTGGACGTTCGGGATGTGACCCACAGCAAGGCGGTGGAGGCGCTGAAGGAGGCCGGATCGCTGGTCAGGCTGTACGTCAGGAGGAGAAAATCCGTCTCGGAGAAAATCGTCGAGATCAAACTGGTTAAAGGACCTAAAGGTCTTGGTTTCAGTATAGCGGGAGGTGTAGGCAATCAGCACATACCGGGAGACAACAGCATCTACGTCACCAAGATCATCGAAGGAGGAGCTGCACACAAAGACGGCAGGCTGCAGATCGGAGACAAACTCCTGGCTgtgaaCAGTGCGTGTCTGGAGGAGGTGACCCATGAGAGTGCCGTGACTGCCTTGAAAAACACTACAGACGTGGTGTATCTGAAAGTGGCCAAACCCAACAGTGTCTTCATGAACGACAGTTTCGCCCCTCCTGACGTCACTAACTCTTATTCCCAACACATGGAGAACCATATCAACACCCCCAACTACCTGAACCAGCCGCTTCCGATGTCCTCCTCTGGACGCTTCTCCCCTACGCCCAAGACCCCACATGGGGACGACGACATGACGAGAGAGCCTAGGAAAGTGGTGCTACACCGTGGAGCCACAGGACTGGGCTTTAACATTGTAGGTGGTGAAGACGGAGAAGGAATTTTCATCTCCTTCATTCTAGCAGGAGGTCCTGCTGACCTGAGCGGAGAGCTGAGGAAAGGAGATCGCCTCGTCTCGGTGAACGGAGTGGACCTACGCAGCGCTACTCACGAACAGGCAGCCGCTGCTCTCAAAAACGCCGGTCAGACAGTCACCATCATCGCCCACTTCAGACCAGAGGagtaCAGCCGTTTCGAAGCAAAGATCCATGACCTGCGGGAACAGATGATGAACAGCAGTATCAGCTCCGGGTCCGGTTCTCTGAGGACCAGTCAGAAGAGATCACTATACGTcagGGCGCTGTTTGACTATGATAAAACCAAGGACTCTGGCCTCCCCAGTCAGGGCCTGAACTTTAAATTTGGTGACATCCTGCACGTGGTGAACGCCTCTGATGATGAGTGGTGGCAGGCGAGACAGGTCACCGCCGAGGGCGAGGTTGAGGAGATGGGAGTCATCCCCAGCAAAAGGAGagtggagaaaaaagagagagcaaggTTAAAAACAGTCAAGTTCAACTCTAAATCTCGAGAGAAAGGGGACAATCCAGATGACACACTATCCAAAGGCCAGAGTGGCCAAGAGGAATATGTACTATCCTATGAGCCTGTGTGTCAGCAAGAAGTGAACTATACTCGTCCAGTGATCATCCTGGGGCCGATGAAGGACAGAGTTAATGATGATCTAATCTCAGAGTTCCCCGACAAATTTGGCTCCTGTGTTCCTCATACGACACGGCCAAAGCGGGACTATGAAGTGGACGGCCGTGATTACCATTTTGTGGTGTCTCGAGAGCAGATGGAGCGAGACATCCAGGAGCATAAGTTCATCGAGGCGGGCCAGTACAACAACCACCTCTACGGCACCAGCGTGCAGTCTGTACGCGAAGTGGCTGAAAAAGGTAAACACTGCATACTAGATGTATCAGGCAACGCCATCAAGAGACTACAAGTTGCTCAGCTCTATCCCATTGCCATCTTCATCAAACCAAAATCAGTGGAGAATATCTTggagaTGAACAGGAGGCTGACAGACGAGCAGGGCAGAAAAACGTACGACAGAGCCATGAAGCTGGAGCAGGAGTTTACTGAGCACTTCACAGccATTGTCCAGGGAGACACGTTGGAAGAAATCTACGATCAAGTCAAGCAGATCATCGAGGAGCAGTCTGGACCATACATATGGGTACTATCCAAGGAGAAACTATGAAGCGCTGCGAAGCAAAGTccattctctcttttctcttttatttattattctttttttcctccgtattttttgtttcttaacaATTTAATCCCTGATCCCGATTCGGTCTGGCCCCAATCTCAGTTCACAGCGACACTTCGATAGGTGTCCCACAGGGCTGGATGCGTCGTCCCCTTTCCGATCTCCACTGCTTCCGGTTTTACACAAAGAGAGGGGATGCAGTCATGCCAAACCTAACATCCATTAGCAGGACTTTGGAAACGGTACAGTTCCTTAATGTTTAAGGGAGGATACTTTTTACAGAAGAAGAGATACGTGGACTGAGCTGgatcttttcctttcctttttcctcattGTGTATGATGTTGATACAGAGGTTAAATCTCAGGCATCAGAATcataaaatagcagaaaaaaattacaaaagcaAAACTTTGCACGTTATAGCTTTAAGAGCATGTCTTCTGTGACCTttagttttcttgtttttcctttCCTCCATAGTTCCATGTTTCACATTTatcatagcttttttttttcgttatACTTTCTGTTAATTGTCAATATTCGggagcttgtctttttttttcgaCCACAACGCATTTGTACAGGAACAAGTCACGTGCAGTCATCAacatcaaaacttttttttttttattcatttttccacAGTGTCTTACATACAGAACATCAGTTTTACTTTGATTTTTACATGTAGGGAAGTCTGCCATTTGTAAGGAACTGCCATTTTAAGAGATGTCTGTGTACATCTGTGGCTTAAAATGCCAATGCGTAGCTGAAAGAAAATTTATTGTACAATGAAATCTTAACAGATATTTAACCCTCCATGAACTGCCtattttgttataataaaaGTCTATAGTGAACTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU381679 lncRNA downstream 237086 17990764 ~ 17992868 (-) True G322310
TU381603 lncRNA downstream 357846 17867836 ~ 17872108 (-) False LOC113546399
TU381604 lncRNA downstream 376117 17852633 ~ 17853837 (-) True G322250
TU381605 lncRNA downstream 379582 17849152 ~ 17850372 (-) True G322251
TU381412 lncRNA downstream 748569 17480442 ~ 17481385 (-) True G322072
XR_003404719.2 lncRNA upstream 29058 18344046 ~ 18346844 (-) True LOC113546439
TU381927 lncRNA upstream 30734 18345722 ~ 18346812 (-) False LOC113546439
TU381963 lncRNA upstream 111745 18426733 ~ 18427069 (-) True G322550
TU381964 lncRNA upstream 114671 18429659 ~ 18430003 (-) True G322551
TU381965 lncRNA upstream 115147 18430135 ~ 18432743 (-) True G322552
XM_026946254.2 mRNA downstream 18492 18194919 ~ 18211462 (-) True LOC113546400
XM_026946255.2 mRNA downstream 18508 18194919 ~ 18211446 (-) False LOC113546400
XM_026946256.2 mRNA downstream 35948 18185908 ~ 18194006 (-) True LOC113546402
XM_026946220.2 mRNA downstream 74563 18131956 ~ 18155391 (-) False tnk2b
XM_034314537.1 mRNA upstream 25035 18340023 ~ 18343844 (-) False ptmab
XM_026946316.2 mRNA upstream 25035 18340023 ~ 18343511 (-) True ptmab
XM_026946300.2 mRNA upstream 58339 18373327 ~ 18380514 (-) True phb2a
XM_034314535.1 mRNA upstream 171291 18486279 ~ 18488416 (-) False si:ch1073-184j22.2
XM_026946313.2 mRNA upstream 171291 18486279 ~ 18488415 (-) False si:ch1073-184j22.2
TU381602 other downstream 357846 17855329 ~ 17872108 (-) False LOC113546399
TU381420 other downstream 729122 17500065 ~ 17500832 (-) True G322080
trnal-uaa_4 other downstream 1148851 17081021 ~ 17081103 (-) True trnal-uaa_4
trnal-uaa_3 other downstream 1256184 16973688 ~ 16973770 (-) False trnal-uaa_3
XR_003403441.1 other downstream 1610220 16619633 ~ 16619734 (-) True LOC113533663
TU381951 other upstream 79261 18394249 ~ 18394823 (-) True G322538
trnav-aac_21 other upstream 432184 18747172 ~ 18747244 (-) True trnav-aac_21
TU382290 other upstream 438784 18753772 ~ 18755593 (-) True G322826
XR_004576919.1 other upstream 688251 19003239 ~ 19006379 (-) True tceanc2
TU382527 other upstream 760012 19075000 ~ 19077917 (-) False G323011

Expression Profile