RNA id: XM_026946254.2


Basic Information

Item Value
RNA id XM_026946254.2
length 4393
RNA type mRNA
GC content 0.43
exon number 18
gene id LOC113546400
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18194919 ~ 18211462 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATGTGACGTTGCCACTCTTCTTAACATTTAGCAAAAGCGTGTTTCAAGGTTGCCTTCAATCAGCACGCCGACTCGAGCGCGCGAGGAGGTGAGgCCATTCAGGAAGACAAAATGGATCAAGCCAGGACGACAATAACGAAAATATTCAACGGGACGGAAGGCTCCTACACGCGCTTCCTGACCCAGAACATGGAGGAAGACTCCAGCCACGTGGAGATGAAGCTGTCGTCTGATATGGAAGAGGAGGTTGGAGAGAATGGAGTGGTGGATCATGGAATACACCATCATGCTCGTCCGTCCTACGGCAGCAAAAATGGCCTGTGCAATCCCAGAAACATCTGCATAGTGGCAACAGTGGCTATTGTCATCAGCTTCGTGTTTGGAATTTTGATTGGGTCTAATATGTATAAAAAGACAACTGAAGAGGCTTCAGGCTCCTGCACGACTCCCGATTCTGCTCCCGCTTCTGCTCCCGCTGACGATGATGTGAGTCCGAAAGAAACGGTTCCCACTCTTGACTGGAGCGACATTACGGCTTTGCTGAAACGCAAACTGACCACAAGTGGCATTGAAAAGAGCCTCCGTGAATTCTCCAGGGAAGATCATCAAGCAGGATCCCCAGGAGATGAGATACTTGCCAATAAACTGTTGACAATATTCAAGGATAATAGCATGGACCCCTGGATTGATACACACTTTGTTAAGGTCCAGAATCTTCCTAAAAGTGGCACAAATAAAGTGACGTTCGGTAGCAATACGTATTCCGAGCCTGGCTATTTGTCCTACAGTGCAACGGGAACAGCACAGGGTGCAGCTTTGTATGCGTATTATGGACGAGAAGACGACTTGAGAACTCTGCAAGACATTGGTATTGACATGAAAGAAAGGGTCCTCTTGGTCCGTGCTGGAAAAAATAGTTATGCTGAGAAGgttGCTAATGCTGCCAAGGTGAACGCAAGTGCAGTGCTGATCTACCCCGATCCTGCTGACTATTCGTTTAATGAAGACACTGCCTTGCTTGGCCATGTCCATCTCGGCTCTGGTGATCCGTACACTCCAGGTTTCCCATCTTTCAATCACACCCAGTTTCCCCCAGCTAAATCATCAGGCCTGCCCAGCATACCCGCCCAGACCATCAGAGCCAGTACAGCTGCAGCGATCATGAGGGGAATGGGAGGTCGCAGTTCCCCTCGTGGATGGGCTGATGGAGGTCTGCAAGACGTTGAGTACAAGCTCGGTAATATTAACAACACTGTCTCCGTGGAGGTGAACAACGTTCTCACTGAGATACAAATCCATAATGTGTTTGGAGTCATCAAGGGTTACGTAGATCCCGATCGTTATGTGGTGATTGGAGCTCAGAGAGATGCCTGGGGTTCTGGATTTGCGAAGTCTACCGTTGGCACGAGCTTGCTGATTGAGTTAGCCAGAGTTATTAACAGCATGATACATGAAGATGGATTCAGGCCCAGGAGGAGCATCGTGTTTGCAAGCTGGAGTGCTGGAGAATACGGGGCTGTGGGTGCCACCGAGTGGCTGGAGGGTTATTTGCCTTCTTTGAATATGAAAGCCTTCTCCTACATTAGCCTGGATGGAGTTGTCACAGGTACCACTTCATTTAAAGCAAGTGCAAGCCCACTGATGTATGGCCTGATACAGAGTACTTTAAAAGAGgtATCTTCGCCCACTGACCCCAACAGGAGTTTATTCGCACAAGTGGCTGGAGCCAACTGGGAGGCGGCTGTGATGGAGCCGATGACGATGGATGACGCAGCCTATCCGTTCCTGGCCTTCTCCGGCATCCCTTCAGTCTCTTTCCGATTCACTCATgataaACCATACCCATTCTTTGGCACCTTGCTGGATACCAGGAGGAATCTTGAGAGTAAAGCATCGAACGTACCCGTGCTGACCAAGGCGGCAGGCGAGATGGCAGGTCAGATTGCTCTTCGGCTGGTACACGATCATCTGCTGAGACTGGACACGGAAAAGTACCTCAATGTCATGCGCATACAAGTGAACAAAATCAATAAGGAAGTGATGAGTCTGCAAAGGaatggTCGTCTTCCAAAGACCCTGCAGATGAAGTGGTTTATGTCCGCTATAGGTTCCTATAGTCGTGCCTCCAGAAATCTCTTCAGCACCATCCAGAACAGCGACCTTGATGATGTGGAGCAGTGTCGCATCATCAATGACAGAATCATGGGGGTGGAAAGAGATCTTCTGTCTCCTTACGTGTCTCCCCGGAACACACCGTTCAGACACATATTACTTGGCTCAGGATCATGCACTCTGCAAGATGTGCTCACACAACTGACCGCGATCAGAGAAGAATCAGCCAGCGCCGACGTTGACCTGCTGAAAAATCAGTTCGCTCTGACCACCTGGACGATCCAGAGCTGTGCCAACGCACTCGCAGGCAACGTGTGGGACATGGACAATGACCTTTAGGTGAAATTTCACTCCGACTATAAAGAGAAGCTTCAGATTAAAACTCCAGTCCCTTTATGGATTAATGCATAATGGATTGCACTCCACTGGCCTATTAGGATGCCTTAAAGTGACACTGTGCTATATTTCAAACAAAAGCTTGCTTGAGTAAACAAATGCTTGTCCATTCCTTCCTCCATTCCTGTGCACCCGTGCGAACGAGGCAAGCAAACATACATCATGTCATGATGTAGCCATTGAAGTCCATGgtagctttttttaaatgttactgtaaatcaaatgaaaatgactGCTACCAAAAGATTTTGGTTGAAATATAGAACAGTGtcataaaaagataaatattatttctaGAATAAAAAGCAGCAgccataaaaaaagaaaaaaaaaataccaaaagaCAAATCTGGTGCTTGATGAACATGTAGTTCtgatttgtaaaatattacCTTGCACAGTATTTTCCTGaacaaatacagcaaaaaaaaaggtcaaggTTTAGCtcaattcataaaaaaaataacaaaacaaaacaaaaaccaaaacaaaacacggGTTCTAGTTTACTATTAGAAAATTCAGTACGTTTTCATTACTTTATTTGAGCTAATGTTGTTCGGAAACACTTGGATTTCAAAGCTGGCAATTAGTTCACGAAGAAAAGTTCAGCAATCTTAACCCTAAGCACCAAGCTTCTTAATGTTTAGCAGTTACAGGTCGTTTGTGTCCTAGAATTGTCTGTGACAAAAATCCGAAGCTGTTGCACCATGAGCTGAACGCCGACTTAACAATGTGGCACTGAgatctctatttatttatttatttatcagtgaCAGAGTTCACTATAAATAGCATTTTGTACcacttttttaaagaaatgtataattatCGGAAGCAGTGCCTTCCATAATTATGACAGTTATACTGTcgaaatgacaaaatgacaaaagcaGCATCTGCTACGGACGTAAGCCCGTttccggaaaaaaaaaaaaaaaaaaaaaaaagtcactactGGGGACCGTCACATTGCATGGTTCAGTGCTGAGTCACACACCTGAATGTTGTCATTGTAACCAATGATTAACGTGATATCTGGTGtcctccacacacacgcacacacacagacacacacataaaacacatatCTGACTCGTCTctggtgtctttttttaaattttttttttttattcttgacCTTAACCATTATCGGGAGCAGCGTCTCCTATAATGTGAGCGAAGTCAATGGTAGTTTTTGCCTACCAGCGTGTTGATATCGAGAGCAGGGCCTCTCATATTTCACTGTATGGTGGATGTTAATTATCGGGAACAGTGTTTCTCATAATGTTGTACATATTACCTGCATGGACAGTGCAGTCAGTTTGCTAAAAATCTcctgtgtgtgttagctgttagtgctgtctttattttttttaatcatgtgaaTGGAAAGTAGCAACAAATCAGATCAATCATGCAAGTTATAGAAATAAATCTACATTTGTGATGACCGTTTGTATAATTctataatatgtatatgtgcTTTTCagctgtttcttgtttcttgcgtgtgatttgttttttttctttcttgtttgtgCTTTATATGATGACGAGCTTAATATTCTttcccagattttttttccctacatatTAAATCTTCTTACAATCTGTTCACCAGCTCAGAATAATTTGGCATTCAGGCACTTGTTTTAAATGATGTAACCAAACTGAAGCTGGAATATTATTTTATGCAAAAGTACACTCAAGTTGCAGCTAACAATCCTTTCCATTCCAGCTGAAtctaagaaagaagaaatgcagatttttcttaatataaaatgtagCTGCTTACGCTCCAGCCCTTCTGAATTGTAAACTTTTTATCTTCAACAATGTCAAATGCATAAACTGTTTAATGCAATAAATATGTACACCTTA

Function

GO:

id name namespace
GO:0006879 cellular iron ion homeostasis biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0042541 hemoglobin biosynthetic process biological_process
GO:0035162 embryonic hemopoiesis biological_process

KEGG:

id description
K06503 TFRC, CD71; transferrin receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU381679 lncRNA downstream 202051 17990764 ~ 17992868 (-) True G322310
TU381603 lncRNA downstream 322811 17867836 ~ 17872108 (-) False LOC113546399
TU381604 lncRNA downstream 341082 17852633 ~ 17853837 (-) True G322250
TU381605 lncRNA downstream 344547 17849152 ~ 17850372 (-) True G322251
TU381412 lncRNA downstream 713534 17480442 ~ 17481385 (-) True G322072
XR_003404719.2 lncRNA upstream 132584 18344046 ~ 18346844 (-) True LOC113546439
TU381927 lncRNA upstream 134260 18345722 ~ 18346812 (-) False LOC113546439
TU381963 lncRNA upstream 215271 18426733 ~ 18427069 (-) True G322550
TU381964 lncRNA upstream 218197 18429659 ~ 18430003 (-) True G322551
TU381965 lncRNA upstream 218673 18430135 ~ 18432743 (-) True G322552
XM_026946256.2 mRNA downstream 913 18185908 ~ 18194006 (-) True LOC113546402
XM_026946223.2 mRNA downstream 9771 18131956 ~ 18185148 (-) False tnk2b
XM_034314506.1 mRNA downstream 32533 18131956 ~ 18162386 (-) True tnk2b
XM_026946220.2 mRNA downstream 39528 18131956 ~ 18155391 (-) False tnk2b
XM_034314505.1 mRNA downstream 39528 18137127 ~ 18155391 (-) False tnk2b
XM_026946232.2 mRNA upstream 18492 18229954 ~ 18314989 (-) False dlg1l
XM_026946233.2 mRNA upstream 18492 18229954 ~ 18314989 (-) False dlg1l
XM_026946231.2 mRNA upstream 18492 18229954 ~ 18314989 (-) True dlg1l
XM_026946243.2 mRNA upstream 18492 18229954 ~ 18314988 (-) False dlg1l
XM_026946237.2 mRNA upstream 18492 18229954 ~ 18314988 (-) False dlg1l
TU381602 other downstream 322811 17855329 ~ 17872108 (-) False LOC113546399
TU381420 other downstream 694087 17500065 ~ 17500832 (-) True G322080
trnal-uaa_4 other downstream 1113816 17081021 ~ 17081103 (-) True trnal-uaa_4
trnal-uaa_3 other downstream 1221149 16973688 ~ 16973770 (-) False trnal-uaa_3
XR_003403441.1 other downstream 1575185 16619633 ~ 16619734 (-) True LOC113533663
TU381951 other upstream 182787 18394249 ~ 18394823 (-) True G322538
trnav-aac_21 other upstream 535710 18747172 ~ 18747244 (-) True trnav-aac_21
TU382290 other upstream 542310 18753772 ~ 18755593 (-) True G322826
XR_004576919.1 other upstream 791777 19003239 ~ 19006379 (-) True tceanc2
TU382527 other upstream 863538 19075000 ~ 19077917 (-) False G323011

Expression Profile