RNA id: XM_026946283.2


Basic Information

Item Value
RNA id XM_026946283.2
length 2822
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC113546413
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18527170 ~ 18534602 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atttgattatttatttggatCTACTTTCAGACATTTCTTGATAATTTGTCTCTCATAATGGAGTCTGAGGAACAGGGACATGACTAAAAGAGTTACAGCTCTAACCTACAATTTCATGTATTTCTCTGACACATGTagatattctttaataaagaaacagaCAGTGTGTTGGTCAGATCTGTTATCTAGTAAGACATCTTCCCTTTGCGTTTGAACCAGTATTATCAAACACATAAACTGAGATCTATGTTCTAtgtatttttgcattgtttctatattaatattatttatataacaaataataatgagGATTTGACTGTTGTTATGTCTGCAGTGACCATGGAGAGGACGCCTTTCCTCTGCTTTGCGTTGATTTTCCTCTGGGCTGCTTCTGCTGTCTGTATGTCAGttttttacAGCAGCCCAAAGGCACACATGCTCCTGCGCTCCAGAAGGGCCAATTCCATTCTGGAGGAACTGAGGTCTCCATCTTTGGAGCGAGAGTGTATTGAAGAGCGGTGTGACTTTCAGGAAGCTAAGGAAATCATCAAGAGCAAAGAGGCCACGTTAGAGTTCTGGACGGTGTATGCAGATGGGAACCAGTGTGTCCCGAATGCCTGCAAGAACGGATTTTGTGTGGATCAGTTCCGGTCCTACATTTGCTCCTGCAACCCTGGTTTTGAAGGAAAATACTGTCATCTATtcagcacacacaccaactgCTCAGTGGACAACGGAGGCTGTGATCACAACTGCCACGAGACGAAAGACAAGACAGGACGTTACTGCAGGTGTATTAAGGGATACAAACTCCATGAAGACTCCAAACAGTGTGTTCCAAAAAATCAGCGGTCTTGCGGACAGATTTTGATCGCTAGGTCATTCTACTCAACAAAGCCCTTTGAAGGTCTACAACCTTGGCTCTTTGGTGGTGAAGTTGGCAAAAGGGGAGAGAGTCCTTGGCAGGCTCTTATCTTGAATTCCAACGGAAAATTTCAGTGTAGCGGTGTCTTGATTGATGAAGTCTGGGTTCTTACTGCTGCTCACTGTCTTGAGAAATTCAGCCGCTTCAGTGTCAGACtagGTGACTACAAACGTTTCAAGTTCGAAGAATCCGAGGTCACCCTTCCTGTGGTGAAAATTGTCCCCCACCCAAAATACAATAGCCTAATGGTGGACAACGACATAGCTCTGCTGCGTTTGTCATCGCCCGTAACATTCAGCAGGTACATCGTCCCTGCCTGTCTGCCGAGTCAAGACCTGGCCGAGCGTGTGCTCCACCTCAACGGCACCACGATGGTGGTGACAGGCTGGGGCATGGATAAAGAAGGGACAGCGCCATACAGCTCGGATCTCAAACACATCAGCGTGCCACTGGTGGAGCAATCCGAGTGTGCACGCCACATGGTCACCAACCTGACGGAGAACATGCTGTGTGCCGGCAGCATTGGGAGCATCAAGGACGCATGCGACGGTGACAGTGGCGGCCCCATGATGACGCTATATCGCAACACGTGGTTCCTCATCGGCCTCGTATCCGCGGGCGAGGGCTGTGGCCACACGGACAAACTGGGCATCTACACCAAAGTCTCCAATTACCTGGAGTGGATTAATAGTGTGAAAAAGCAGCTGTGATCGATTCTTGTTGCTTCAGATCTGTTCTGCCtatcattccagattcagttAGGTCTTTTATTTTAGTAGAGGCTCTTCTTTTTACTAAAAACAAGTCCCCAAActttaaaatcaaatcaatatcATCTTTACTGTGCACAAagttaattaaagttaaattttaCCAATCCACTATTATCATAAAGTCCAGTTGGATAGATAGGAAAACTTGTTAAGTGGCTGCTAAAAAGCCCTAATTAGACTTGTAGACAGTGCTAGGTCAGTTAGGGCAGTgctagctcagtggttaagctctTGGACtgctgattggaaggttgtgattTCAAAATCCAGCACTGCCACTgttaggcccttgagcaaggcccttaaccctcaactgctcagttgtgtaaatgagataaatgtaagttacCCTGGATAAGGgtttctgccaaatgctgtaaatgttgtAAAGCCTTCTCACCTTACTTAGTCAACTCATGCACGAATATCCACTTCCAGATTCATGAAAATGATCTAAACTTTTTATGGGCCTTATTCAAATTTCTGCATATTAgcaggaaaaaggaaataaggCCACTTCTTATTCACATATGCCACAATATAATTTTAGTTTactattaaagaaataaattaattaacagttgtattattatataagttctttaatattttaacaatagatgctaccaaataaataaaaatgatcacacGACTGTGTGATTCAATCATCCAGATTCGTAGGCAAAACAAATGAGAGAAACTCGTCCCTACTGTGTTAATTTAATCGCTGTCTGTAAGCGGGAAGTTTATCACAGAGATGGGCAAAAATGTTATTACCGACGTCACCCCATGAAACTAATCGCATCCAAATAGGgcataagacaaataaatatcATATGCTACAAGTGCGTAATTCAAGAGATGAAGATTTCACCCTTTGCCAATTAGCGCTACATTCTTTAAAATTCATAGACATGTCTCATTTCTACTTATTACttaatttgttttgctttagagattttaaaatgaactcaTTGCTTGACATTGAACCAGAGATGTTAATAGGATGTTTATAAAGCTTCTGTGTAGAATGATCTTGTACTGTGACTTTCACAAATCACTAACACTGgcgactccttccaaaattgttcaataaacatctccttagagaaaattCCAAAGTA

Function

GO:

id name namespace
GO:0008236 serine-type peptidase activity molecular_function

KEGG:

id description
K01344 PROC; protein C (activated)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU381990 lncRNA downstream 41690 18474248 ~ 18485480 (-) False LOC117599933
XR_004580279.1 lncRNA downstream 41742 18474224 ~ 18485428 (-) False LOC117599933
TU381989 lncRNA downstream 49494 18474248 ~ 18477676 (-) True LOC117599933
TU381965 lncRNA downstream 94427 18430135 ~ 18432743 (-) True G322552
TU381964 lncRNA downstream 97167 18429659 ~ 18430003 (-) True G322551
TU382292 lncRNA upstream 221945 18756373 ~ 18756647 (-) True G322827
TU382296 lncRNA upstream 230331 18764759 ~ 18764999 (-) True G322831
TU382315 lncRNA upstream 277582 18812010 ~ 18812377 (-) True G322849
TU382364 lncRNA upstream 408150 18942578 ~ 18956617 (-) True G322889
TU382356 lncRNA upstream 450768 18985196 ~ 18986806 (-) False mrpl37
XM_026946288.2 mRNA downstream 188 18521401 ~ 18526982 (-) False LOC113546416
XM_026946289.2 mRNA downstream 282 18521401 ~ 18526888 (-) True LOC113546416
XM_026946217.2 mRNA downstream 10905 18490937 ~ 18516265 (-) True wdr33
XM_026946218.2 mRNA downstream 10906 18490937 ~ 18516264 (-) False wdr33
XM_026946313.2 mRNA downstream 38755 18486279 ~ 18488415 (-) False si:ch1073-184j22.2
XM_034314526.1 mRNA upstream 685 18535113 ~ 18540009 (-) False LOC113546415
XM_026946287.2 mRNA upstream 692 18535120 ~ 18540006 (-) True LOC113546415
XM_026946293.2 mRNA upstream 12741 18547169 ~ 18553875 (-) False saga
XM_026946292.2 mRNA upstream 12741 18547169 ~ 18553875 (-) False saga
XM_034314529.1 mRNA upstream 12741 18547169 ~ 18553846 (-) True saga
TU381951 other downstream 132347 18394249 ~ 18394823 (-) True G322538
TU381602 other downstream 655062 17855329 ~ 17872108 (-) False LOC113546399
TU381420 other downstream 1026338 17500065 ~ 17500832 (-) True G322080
trnal-uaa_4 other downstream 1446067 17081021 ~ 17081103 (-) True trnal-uaa_4
trnal-uaa_3 other downstream 1553400 16973688 ~ 16973770 (-) False trnal-uaa_3
trnav-aac_21 other upstream 212744 18747172 ~ 18747244 (-) True trnav-aac_21
TU382290 other upstream 219344 18753772 ~ 18755593 (-) True G322826
XR_004576919.1 other upstream 468811 19003239 ~ 19006379 (-) True tceanc2
TU382527 other upstream 540572 19075000 ~ 19077917 (-) False G323011
XR_004580317.1 other upstream 964133 19498561 ~ 19507197 (-) False kdm4ab

Expression Profile