RNA id: XM_026946296.2


Basic Information

Item Value
RNA id XM_026946296.2
length 1312
RNA type mRNA
GC content 0.55
exon number 10
gene id gnb4a
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18435349 ~ 18449078 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCATGCTCCAATATCAGTATGGGTGTGGTGGTAATCCCGGTATGAATTGGTCAGATTCGCGTCAAAATTTGGCGCCTGCGGCCTTGTTGTTTTTCTGGACATAACaaacgacacacacacaaaaatgagcgaattacatttttaaagcaatCTACTAAAGCATGACTAGGAACTGACGGAAGGTCTGGCGGATCTTGAGAGCTATCAACAGTAGGCCTGCGTGTTTATCAGCGTGAGAAGTGAAGCGGGAGTGAAACCCTCAGCGGAGGATCATGAGCGAGCTGGAGCAGTTGCGGCAGGAGGCCGAGCAGCTGCGCAATCAGATCCGAGATGCCAGGAAAGCGTGCAGCGATTCCAGTTTGTCCCAGATCACAGCTGGGCTGGACTCGGTGGGGAGGATCCAGATGCGCACGAGACGAACCCTGCGGGGCCATTTAGCCAAAATCTACGCCATGCACTGGGCTACTGATTCCAGgCTACTAGTGAGCGCATCTCAAGATGGAAAACTCATCATATGGGACAGCTACACAACAAACAAGATCCACGCCATTCCTCTGCGCTCGTCCTGGGTCATGACGTGTGCCTACGCTCCATCTGGGAACTACGTGGCCTGCGGAGGCCTGGACAACATTTGCTCCATCTACAGCCTGAAGACCCGTGAGGGCAACGTCAGGGTCACCAGAGAACTACCCGGGCACACAGGTTATTTGTCGTGCTGTCGTTTCTTGGATGATAGCCAGATAGTCACCAGCTCTGGAGACACCACATGTGCTCTGTGGGACATAGAGACCGGTCAGCAGGCCACCATCTTCTCCGGCCACAGCGGAGACGTGATGAGTCTCTCTCTGAGCCCGGACTCCAGGAGCTTCGTATCGGGAGCCTGCGATGCCACCTCCAAGCTCTGGGACATCCGAGACGGCATGTGCAGGCAGTCCTTTACCGGTCACGTCTCCGACATCAACGCCGTTTGTTTCTTCCCAAATGGGAATGCATTTGCAACCGGCTCAGACGACGCCACGTGTCGCCTGTTCGATCTGCGTGCTGATCAGGAGCTCATGATGTACTCTCACGACAACATCATCTGCGGCATCACGTCTGTGGCTTTCTCTAAGAGCGGCCGCCTGCTCCTCGCCGGCTACGACGACTTCAACTGCAACGTGTGGGACACGCTGAAGGGAGAACGCGCAGGCGTTTTGGCCGGACACGACAACAGGGTGAGTTGTTTAGGCGTGACCAACGACGGCATGGCTGTGGCCACTGGCTCATGGGACAGCTTCCTCAGGATATGGAACTGACCTGATTGGGCAGGACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU381841 lncRNA upstream 2647 18432326 ~ 18432702 (+) True G322446
TU381819 lncRNA upstream 61466 18370727 ~ 18373883 (+) True G322429
TU381788 lncRNA upstream 91859 18338329 ~ 18343490 (+) True G322405
TU381790 lncRNA upstream 91859 18338329 ~ 18343490 (+) False G322405
TU381778 lncRNA upstream 203886 18229395 ~ 18231463 (+) True G322398
TU382137 lncRNA downstream 268652 18715395 ~ 18720439 (+) True G322696
TU382184 lncRNA downstream 318449 18765192 ~ 18765602 (+) True G322738
TU382190 lncRNA downstream 364362 18811105 ~ 18811652 (+) False G322744
TU382191 lncRNA downstream 364441 18811184 ~ 18812335 (+) True G322744
TU382193 lncRNA downstream 365760 18812503 ~ 18812848 (+) True G322746
XM_034314516.1 mRNA upstream 5327 18394023 ~ 18430022 (+) False pex5lb
XM_026946262.2 mRNA upstream 5327 18394023 ~ 18430022 (+) True pex5lb
XM_034314517.1 mRNA upstream 5327 18394023 ~ 18430022 (+) False pex5lb
XM_026946263.2 mRNA upstream 5327 18394023 ~ 18430022 (+) False pex5lb
XM_026946264.2 mRNA upstream 5327 18394023 ~ 18430022 (+) False pex5lb
XM_026946302.2 mRNA downstream 7393 18454136 ~ 18477637 (+) False si:ch1073-184j22.1
XM_026946301.2 mRNA downstream 17072 18463815 ~ 18477637 (+) True si:ch1073-184j22.1
XM_026946310.2 mRNA downstream 41884 18488627 ~ 18489656 (+) True sft2d3
XM_026946315.2 mRNA downstream 71185 18517928 ~ 18520990 (+) True dusp28
XM_026946158.2 mRNA downstream 97162 18543905 ~ 18546163 (+) True LOC113546359
TU381842 other upstream 12718 18415817 ~ 18422631 (+) False pex5lb
TU381774 other upstream 208116 18226562 ~ 18227233 (+) False si:ch211-162e15.3
TU381775 other upstream 208213 18226562 ~ 18227136 (+) False si:ch211-162e15.3
XR_003404718.2 other upstream 803741 17570649 ~ 17631608 (+) False egfra
XR_004580277.1 other upstream 951672 17478834 ~ 17483677 (+) False fuz
XR_004580282.1 other downstream 369266 18816009 ~ 18871360 (+) True slc44a5a
TU383181 other downstream 1991959 20438702 ~ 20440561 (+) True G323534
XR_004580310.1 other downstream 2190841 20637584 ~ 20659411 (+) False arhgef4
trnap-ugg_22 other downstream 2468661 20915404 ~ 20915475 (+) True trnap-ugg_22
TU383298 other downstream 2574446 21021189 ~ 21136847 (+) True G323615

Expression Profile