RNA id: XM_026946304.2


Basic Information

Item Value
RNA id XM_026946304.2
length 1442
RNA type mRNA
GC content 0.50
exon number 3
gene id bambib
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 17990725 ~ 17994678 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCAGTCTCAGCTCAGGGCTGTGAGACTTCAGATGATCGGTGGAGTGTCAGTGTTTCTGTTTGGACTTTTATTCTCAAAAAACATCAgcaccaaaaagaaaaagagaaaaaaagcaaaacaaaacaagccaAGCATTGGAATTTATCTTTGATCTTAATCCGGATGTGAAAAGTACATGCTTTCTGAAAAGTAGCCTTTTAGAAGAGAGTGTTTGTGTCTTTGAGAGGACTCTGTGATGTGATTTGGGATGATGATGTTGGATTATTTTCCGGATTTGTCCTGCATCATGATGTGTGTGTCGTGGACAAGCTGAGAgccagacacagagacagagacagagacagaagagacagagacagaagtgtAAAAGTGTCCTTAATGGAGCGCCTGGTTTCCATTTGGCTGCAGCTGGAGCTCTGGGCCATGGCTGTGCTCTTAACCAGAGGAGAAATCCGGTGTTATTGTGACTCACCGCACTGTGTGGCTACCGGTTACATGTGCAAATCGGAGCTTAACGCCTGCTTCACGCGTATCTTAGATCCCCAAAGCTCCAAATCTCCACTCTCGCACGGCTGTTACGAGCCTGCCCTAAACGGAGGAAGCGTGTGCCGATCCGAGGCTACCCACGATGCCCTGCACGGCCATGCCACGCTCGAGTGCTGTCACGAGGATATGTGCAATTACAGAGGTCCACAGGATCTCACCTACAGCCAGGGAGGAAGCCTGGATCATCGGAGTCGTCCTCAGGCTGAAGGAGGACGTCAGATAATCGCCCGTGTGCAGGAAATCCCCTCCGCTAAGGAAGTGTGGTTCCGCGCTGCCGTCATTGCCGTGCCCATCGCCGGTGGCCTCGTGCTCGTCCTCCTCATCACGCTGGCTCTGCGGATGCTGCGCAGTGAGAACCAGCGCCTGAGGCAGCAGCGACGCGAGATGCTCTCTCGCCTCCACTACGGCTTCCACGGGCAGCATCTGGCCAAAAGCCGCAGCACCAAACTCGACCTGGAGTGCATGATGCCTCTGGGAGGACATGAGAGCTGCTGTCTGACCTGCGATAAGATCAGACAGTCCGATCTGAGCAGCCAGAGACTCTTATCGCTGGTCCACTGGGGACGGCACGGCCCAAGAGGCAAGCTGGAGTTGGTCTGAACGCctttaggaggaaaaaagagggaaaaaaaacaaacttgaaAGCATCATCCATCTGGTTGCTGCTGTAGAAGCACTTTACTTGAATCTGGCACAAGAGCACTGTGCTCAAGACGGACTTTTAAAAACTGGACCTCTCTAATAACtgaaggatttaaaaaaaaaaacaaaaaaaagccaagaCGTGTTATAGATTTGCACTTTTGTATAAAGAAGCGTTTGAGATAAAAATGGACTGTTCATGCTTCCTGAGTGTACAGATTTGTTCGTGTAAATATTACATGACACAGAATCA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU381586 lncRNA upstream 135467 17854548 ~ 17855258 (+) True G322233
TU381490 lncRNA upstream 204024 17721938 ~ 17786701 (+) True G322146
TU381461 lncRNA upstream 324512 17589072 ~ 17666213 (+) False npc1
TU381471 lncRNA upstream 359213 17631214 ~ 17631512 (+) True G322127
XR_004580280.1 lncRNA upstream 453565 17525571 ~ 17537160 (+) True LOC117599934
TU381693 lncRNA downstream 79651 18074329 ~ 18074748 (+) True G322324
TU381739 lncRNA downstream 204162 18198840 ~ 18199709 (+) True G322365
TU381778 lncRNA downstream 234717 18229395 ~ 18231463 (+) True G322398
TU381788 lncRNA downstream 343651 18338329 ~ 18343490 (+) True G322405
TU381790 lncRNA downstream 343651 18338329 ~ 18343490 (+) False G322405
XM_026946277.2 mRNA upstream 11603 17965893 ~ 17979122 (+) True wacb
XM_026946278.2 mRNA upstream 11603 17966188 ~ 17979122 (+) False wacb
XM_026946276.2 mRNA upstream 11603 17966192 ~ 17979122 (+) False wacb
XM_026946314.2 mRNA upstream 118696 17860311 ~ 17872029 (+) True rab18b
XM_026946259.2 mRNA upstream 136855 17842449 ~ 17853870 (+) True yme1l1b
XM_026946318.2 mRNA downstream 231243 18225921 ~ 18227140 (+) True si:ch211-162e15.3
XM_034314516.1 mRNA downstream 399345 18394023 ~ 18430022 (+) False pex5lb
XM_026946262.2 mRNA downstream 399345 18394023 ~ 18430022 (+) True pex5lb
XM_034314517.1 mRNA downstream 399345 18394023 ~ 18430022 (+) False pex5lb
XM_026946263.2 mRNA downstream 399345 18394023 ~ 18430022 (+) False pex5lb
XR_003404718.2 other upstream 359117 17570649 ~ 17631608 (+) False egfra
XR_004580277.1 other upstream 507048 17478834 ~ 17483677 (+) False fuz
XR_004580278.1 other upstream 507048 17478834 ~ 17483677 (+) False fuz
TU380835 other upstream 1138301 16851445 ~ 16852424 (+) False LOC117599970
trnag-gcc_20 other upstream 1803684 16186971 ~ 16187041 (+) True trnag-gcc_20
TU381774 other downstream 231884 18226562 ~ 18227233 (+) False si:ch211-162e15.3
TU381775 other downstream 231884 18226562 ~ 18227136 (+) False si:ch211-162e15.3
TU381842 other downstream 421139 18415817 ~ 18422631 (+) False pex5lb
XR_004580282.1 other downstream 821331 18816009 ~ 18871360 (+) True slc44a5a
TU383181 other downstream 2444024 20438702 ~ 20440561 (+) True G323534

Expression Profile