RNA id: XM_026946308.2


Basic Information

Item Value
RNA id XM_026946308.2
length 2493
RNA type mRNA
GC content 0.44
exon number 5
gene id fgf12a
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18585063 ~ 18637704 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCagataaatctctctctctctctctctctctctctctctccccctttctccCTTCTgtttccctctccctccctccccctttctctcttcctcttctccccCGCCCATGTAGTGTGGAATAAAAAACTCTGCCTCTCTCGTTTATGCATCAATAGCGCTTCTGCTGCCTCCAGCTGCTCGGACACGCCACGTTTTCCTTCTGTGATCTCCAAAAACACGGCGCCACATGGAGAAAGGAGCAGAGCCGCAGCTGAAAGGGATTGTGACCCGGCTATTCAGCCAGCAGGGCTTCTACCTGCAGATGCAGCCGGATGGAACCATTGATGGCAGCAAGGACGAGAACAGCGACTACACCCTTTTTAACCTCATCCCGGTCGGATTAAGGGTGGTGGCCATCCAGGGCGTGAAGGCTGGCTTTTATATTGGCATGAATGGAGAAGGCTTTCTCTACAGCTCGGAAATGTTCACTCCGGAGTGTAAATTCAaggagtctgtgtttgagaacTACTATGTCATCTACTCATCCACCATGTACCGGCAGCAGGAGTCGGGCCGGGCCTGGTTTTTGGGCCTTACGAAAGACGGCCAAGTCATGAAGGGCAATCGTGTGAAGAAAACCAAGCCCTCCTCACACTTCCTCCCCAGGCCTATTGAAGTCTGCATGTACCGGGAGCCTTCGCTGCACGAGATCGAAGAGAAGCATCGCTCCAGGAAAAGCTCAGGAACTCCGGCCATGAACGGAGGCAAAGCGGTGAACCAGAACTCTACATAGCAGGACCTGGACATgcaaaaaataatcacacacacacaaaaacacacacgcatcgCCCGCTGAAAAGAACAAGCCTTCGGAAAAACACCACAGAACTCACGCTCAACCGATACGACGAAGTCTTGCCTGTGAAAATTGTTAGACGACATCGGAGGAGGTGGAGGGGCTCGAAGCTACAAACGTAAAGCCACAAATCAGGACTCAAACTCACATTTTATGCAATGATGACAGGGCAGTAAGTCGATCGAGTCATGAGTCAAGAATTGTTTTGAATTAATACTGTGTAAAGAAAAGCGAGCTTTAAAGCTCTCTCGTGTGTTAGGATAATCGCTGAATGCTTTTCCACCTCCTCGTGTATTATTGGTATTGAAGACAATAATatcttctctttctccatttATTCTCCTGGTTTTTATCCAGACTGCACATGTTTAAACaaatctcattattattattattattattattattattattattatgattattatttaacttGCTTATCATTGAATGCACTTTTACTGAAGTGAACCTATATGAATCTACAGTGGTGTCAGTTTATGACTGTATTATAATTGTACTTAAAAATTGGTCTGCAGGTTATGAGGAGGACTTTGGGGTGTTTTTTTGGTCTTCCTGGACGCAAAAGCAGGGTCGCAGCTAGCTTGTGAGACGGCTTCAGCTGCAGGCATcacgtttgtttgtttgtttattcattccaCGAAGAGCTACTGTCCATATTTTCTTCGCAAAATCATTTTGATTTGAGTGCAGATTTGCGTGAGATGCTGCTCTCTGCCTGCTTCAACCTGGAACAAACTCAACAACGTTTTAATGCAAGGACACCTGTCTGTAAATAGCCACAATTTGGATTTCATTCCCAATTCTTCCTAGAATTCTCCTAATCCCAGATGAGTACTtctgagctggagaaaaaaataataaaacttcgCTGAGCCAGCATATGCCTCAACCGACGGCGAAATACCTCTTCTCCCAAGCATTCTCCAACTCAGGAAGCCCTAGTCTAAAAAGGTCTAGCAATTTTTTGCCACCCCACTCGCCCTGTCTGGGCCAAAGCACAAAGACTGGCCTGTAGGCTGTAGGTGTGGATGGGGGTGGGGTGGAAGGGGTTGTTTGGGTGTCACAAACAAGCTCAGTTCCAGCGAAAAAAGTTTCTCAGTTTGAGAAAGCTCCGTGCGCTATTCACCAGTCTTCCACTAGGGGCAGCAGTGAGAGCTGAACCCGAGAGTCTGCCGCAAAGAGGTGACGAAAACATTTTTTGCAAAGGACTCAAAACGCATGAATCAGGAATGCTGTGTTTCTTCTTAACCTAGAGTAGACATGGgggattatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttgggggtgGGATTTGGAGAACATGAAATATGAGCAAGTAACTCTCTCTAGACAGTTCCTGAAAGGTGAGGAAGAGGCTTTAACAAAACTGTggggttttgtgttttttttttgtttgtttttttttttttcattttctttctttattttttgctgtgtaaaaacagaactttatttttcacgtttGCAGATGTTTTCACCTTACCGAAACACtatcatataaatattaatatgcattatgaattattatgaGATGTACAAAAAATATGCATTGATATTAAGAAGAATGATGTTAGAGATTGTTTAAGAATAAAGGTATGATACTAAGCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU381857 lncRNA upstream 145197 18439167 ~ 18439866 (+) True G322462
TU381841 lncRNA upstream 152361 18432326 ~ 18432702 (+) True G322446
TU381819 lncRNA upstream 211180 18370727 ~ 18373883 (+) True G322429
TU381788 lncRNA upstream 241573 18338329 ~ 18343490 (+) True G322405
TU382137 lncRNA downstream 77691 18715395 ~ 18720439 (+) True G322696
TU382184 lncRNA downstream 127488 18765192 ~ 18765602 (+) True G322738
TU382190 lncRNA downstream 173401 18811105 ~ 18811652 (+) False G322744
TU382191 lncRNA downstream 173480 18811184 ~ 18812335 (+) True G322744
TU382193 lncRNA downstream 174799 18812503 ~ 18812848 (+) True G322746
XM_026946269.2 mRNA upstream 2843 18574380 ~ 18582220 (+) True mb21d2
XM_026946299.2 mRNA upstream 12560 18562098 ~ 18572503 (+) True crfb16
XM_026946158.2 mRNA upstream 38900 18543905 ~ 18546163 (+) True LOC113546359
XM_026946315.2 mRNA upstream 64073 18517928 ~ 18520990 (+) True dusp28
XM_026946310.2 mRNA upstream 95407 18488627 ~ 18489656 (+) True sft2d3
XM_034314528.1 mRNA downstream 25454 18663158 ~ 18667572 (+) True cwc25
XM_034314502.1 mRNA downstream 54488 18692192 ~ 18716552 (+) True LOC113546386
XM_034314503.1 mRNA downstream 54488 18692192 ~ 18716552 (+) False LOC113546386
XM_026946208.2 mRNA downstream 54488 18692192 ~ 18716552 (+) False LOC113546386
XM_034314504.1 mRNA downstream 54488 18692192 ~ 18713708 (+) False LOC113546386
TU381842 other upstream 162432 18415817 ~ 18422631 (+) False pex5lb
TU381774 other upstream 357830 18226562 ~ 18227233 (+) False si:ch211-162e15.3
TU381775 other upstream 357927 18226562 ~ 18227136 (+) False si:ch211-162e15.3
XR_003404718.2 other upstream 953455 17570649 ~ 17631608 (+) False egfra
XR_004580278.1 other upstream 1101386 17478834 ~ 17483677 (+) False fuz
XR_004580282.1 other downstream 178305 18816009 ~ 18871360 (+) True slc44a5a
TU383181 other downstream 1800998 20438702 ~ 20440561 (+) True G323534
XR_004580310.1 other downstream 1999880 20637584 ~ 20659411 (+) False arhgef4
trnap-ugg_22 other downstream 2277700 20915404 ~ 20915475 (+) True trnap-ugg_22
TU383298 other downstream 2383485 21021189 ~ 21136847 (+) True G323615

Expression Profile