RNA id: XM_026946312.2


Basic Information

Item Value
RNA id XM_026946312.2
length 1052
RNA type mRNA
GC content 0.46
exon number 5
gene id cldn15la
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18556334 ~ 18560556 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTACTTGAAATAATTGCACTCTCAGTGATCAGCAGCACAGGAAGGAGACGGAGAAGACAGTGTTTAAGCTTCATAAGGCTGCTCTGTGATTTGATTTGGTGCTTGTGAGAAAATTTAGGGTGAAAATGTCAACAGCGTTGGAAGTGACTGGGTTCTTGCTAGGTGTTGCATCTTGGTTGGTAACGGGCGCCTCTCTGGCCAACGACTACTGGAAAGTCTCATCTTTCTCCGGTAGTGTCATCATTTCAAGCCGTCAGTACGAGAACCTGTGGCACGCATGTGCTGAATCCAGCTCCGGGATCGCTGAGTGCCGAGATTTCGAGTCCTTGCTGGACTTGCCAGGCTACCTCCAAGCATGTCGGGCTCTGATGATCATCGCCCTCCTCTTAGGCCTCTTCTCTATGATCTTGTCCATCCTGGGCCTAAAGTGCATTACAATCGGGAGCGCAGGCGATCAGGCAAAGGCTAAGATGGCCACCACTGGTGGCATCATCTTTATCCTGGCAGGTCTTTGTACGATAACGGCTATCTCATGGTACGCTGCACGCATTGTTCAAGACTTTAAAGACCCTTTCAGTGGAGGCATTAAatTTGAGCTGGGGGCAGGACTGTACATGGGATGGGGCGGAGCGTGTCTCTCCATTCTGGGTGGAGCTCTTCTCTGCTGCGCCTGCAAAAGAGCATCTTCAGGAAAATCCAAGGGtggatACTACTCCAGCAGTCATGCAGCGAAGATCCACAAACCCGTGTCCGATTCAGAGACGGCGAGGGCTTACGTTTAAACTTCAGATTTTCTCTGCATGTAGTGTTGTTACTTGGTTGTTCGTTTTAACTGACccattttttctactttttttttaaatatttggctAATGATTAATGTGGAATTTGATTCATTAATGACAAAAGAATGTTTTACGGATGTTGGATATTATGTAATTTGATTACTATGATTGATCTGTattgtgttctgtgttttaaaaggCTAAGGCTAGTTGTGTGGTAAGCAGAGTTTATCTTGGGTTCAATAAAGCTGAATTGAATGGACCAGA

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU381990 lncRNA downstream 70854 18474248 ~ 18485480 (-) False LOC117599933
XR_004580279.1 lncRNA downstream 70906 18474224 ~ 18485428 (-) False LOC117599933
TU381989 lncRNA downstream 78658 18474248 ~ 18477676 (-) True LOC117599933
TU381965 lncRNA downstream 123591 18430135 ~ 18432743 (-) True G322552
TU381964 lncRNA downstream 126331 18429659 ~ 18430003 (-) True G322551
TU382292 lncRNA upstream 195817 18756373 ~ 18756647 (-) True G322827
TU382296 lncRNA upstream 204203 18764759 ~ 18764999 (-) True G322831
TU382315 lncRNA upstream 251454 18812010 ~ 18812377 (-) True G322849
TU382364 lncRNA upstream 382022 18942578 ~ 18956617 (-) True G322889
TU382356 lncRNA upstream 424640 18985196 ~ 18986806 (-) False mrpl37
XM_026946293.2 mRNA downstream 2459 18547169 ~ 18553875 (-) False saga
XM_026946292.2 mRNA downstream 2459 18547169 ~ 18553875 (-) False saga
XM_034314529.1 mRNA downstream 2488 18547169 ~ 18553846 (-) True saga
XM_034314526.1 mRNA downstream 16325 18535113 ~ 18540009 (-) False LOC113546415
XM_026946287.2 mRNA downstream 16328 18535120 ~ 18540006 (-) True LOC113546415
XM_026946317.2 mRNA upstream 108478 18669034 ~ 18670613 (-) True sst2
XM_026946213.2 mRNA upstream 111104 18671660 ~ 18692091 (-) False LOC113546387
XM_026946212.2 mRNA upstream 111104 18671660 ~ 18692091 (-) True LOC113546387
XM_026946252.2 mRNA upstream 156744 18717300 ~ 18741567 (-) True nyap2b
XM_026946141.2 mRNA upstream 312559 18873115 ~ 18883126 (-) False lhx8a
TU381951 other downstream 161511 18394249 ~ 18394823 (-) True G322538
TU381602 other downstream 684226 17855329 ~ 17872108 (-) False LOC113546399
TU381420 other downstream 1055502 17500065 ~ 17500832 (-) True G322080
trnal-uaa_4 other downstream 1475231 17081021 ~ 17081103 (-) True trnal-uaa_4
trnal-uaa_3 other downstream 1582564 16973688 ~ 16973770 (-) False trnal-uaa_3
trnav-aac_21 other upstream 186616 18747172 ~ 18747244 (-) True trnav-aac_21
TU382290 other upstream 193216 18753772 ~ 18755593 (-) True G322826
XR_004576919.1 other upstream 442683 19003239 ~ 19006379 (-) True tceanc2
TU382527 other upstream 514444 19075000 ~ 19077917 (-) False G323011
XR_004580317.1 other upstream 938005 19498561 ~ 19507197 (-) False kdm4ab

Expression Profile