RNA id: XM_026946314.2


Basic Information

Item Value
RNA id XM_026946314.2
length 2738
RNA type mRNA
GC content 0.43
exon number 7
gene id rab18b
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 17860311 ~ 17872029 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCCACCACAAACTTCGTCAACCTTCTGTCCCAAACAGTGTCACGTCACCGCATCCAGCATTGTCCAGAGTAAAGCTGCGGAAAACCTCACAACATGGACGACGACGTTTTAAccactttaaaaatattaatcatcGGGGAGAGCGGCGTCGGAAAATCCAGTTTGCTCCTGAGGTTTACAGATGACACGTTCGATCCAGAATTAGCCGCAACAATCGGTGTGGACTTTAAAGTGAAAACTATAGCAGTAGATGGCAACAGAGCCAAGCTTGCTATATGGgacaCAGCCGGACAGGAAAGGTTCAGGACTCTGACGCCCAGCTACTACAGAGGTGCACAGGGAGTAATACTGGtgtacGATGTGACGAAGCGGGACTCGTTCACAAAGCTGGAGAACTGGCTCAATGAGTTGGAGACGTACTGCACACGCAACGACCTCGTCAAAATGCTCGTCGGCAACAAAATCGACAAGGACAACCGTGAGGTGGACAGGAACGAGGGCCTGAAGTTTGCTCGTAAACACTCCATGCTATTCATCGAGGCGAGCGCTAAGACCAGGGACGGCGTCCAGTGTGCCTTCGAGGAGCTGGTGGAGAAGATCCTGCAGACCCCGGGCCTGTGGGAGAGCAGCGTCCAGAATCACGGCGTTCAGCTCGGAGAGCAGCAGGCGCAGAGCTACAGCGCCTGTGGCGGATACTGCTCCCTCATCTAACTTCCACAATTCCACCGGACTGAGAcatgagatgaaaaaaaaacaaactgcgATTTCCTGCTTCTGAATGAGAGGCGAAGGTCGGCTCCGTCCCGGGCAGCCGGAGGACGTTCACACACCCTGTGTTTCCTTCCACTTCGATTTCTGTATGGTATTTTATCTAACTTATCATGAGCTGCATTGAATTACCGTTGCTGTCACTATGTCATTATACTGAAGCAGAAGGACCGATGCTgacatcattctctctctctatgttatagttattacaaattaaaaacaggGGCCATTAAAGAAAGAGGGTGGGATTAGTTTCTCTACTCCCGGGGTAAACTGTCCTAACTTTTCCATCAAGTTCCACCCCGTGCTTCTTCTCCAAGCCTCTTTCCTCtatctaatataatatatttccttatttttgtaataatttcGAGTGTTGGCTGCTTTTAACCGGCACCAAACACCCTcctgtttgctgtttttataaTCCATCTCCTCGCTTAGCATGATCCTGCTAGCATTTCTTGAGAAATATTCATACTAAAATATAAGGAATGGCTTTTCTGAGTTCTTATTGTTCTCCCTTTATCGTCTCTGGTGACTAAGCAGTGATTTTACATCCGTAGAACATCTTACAGTGCAATAActctctttattttcatttatggaCCACTGATGTGTACAACTGTAGCACGTGAGTACTGGGTTTCTTGCCGTCCTGCTTACACAAACTACTCAAGCTTGAAAAGTTAGTCTTTTGAAAAGGTTTGGCTGTATCCGAATGGCTCGATTtcaattgctttttttttttttttttaacaactctCCTTATTTTAGACTTTGTTAAGCCTCTAATCGCTGTGTTAAACATGACCGTCACTGTTGATAAATCACTAGAACTGGGTTTAATATCAGTAGTTTGTGTCCTGATTAATTTCATTTACACTATTCCTCATCAGTGGAGAGCTAAACACACTTGGAGGGTACCATTCCTTGTCGCTGCTGTGGTACCCTAAACCCTTTGTATCTTTACTACAAATCTTTCACCTCCATGAAGAGCAGTCAGAAAGGTAAATATGTTCCTTAAATCcttttaaaggtgcactatGTCAAAATTACATATTAAAGGTTCAAACTCTAAGAGTACCACCTCAGCGATAAGTATCATTAACACCTTTTTATCCGAGAGTGTATATCTGAGAGCGTATATTAAACctgatattattttaaagcAGGTATTAGTACTTTCTTGATGGGAGAAGTAGGCCTTCATCTGAAAATCAATAAATCCGACTGTTCGAATCCATTTTTAAAGGGGCTATATGTAAAAGTCATGTTAAAAGCATGTTATGAGGCTGTAGCCTTCTGCTTTTCCTGATACCACCCGAACATCCTGCAAGCAAATAAAGAGCATGTGCAGTCGTCGTTTCCTGTTTGCACCGACACACCTGCTGTATTCTGATGAGCTGAAACTTTTGAAATActgaaatgagcaagaatttgTGGGGTGAATATAAGAGAGGATGGGTTCAGTCAAATGTGTGAGCGGGTACCAGTACTGTGAAATCTGAAACAGATATGTGTTTAACGTGCTACATCCAGGTATAATGTGTCACGTGAAGTTTAAAACAGCATTCGCTGACTTTTAAAAGGTTAATAAACCCACCTGGCATTAATCAGGCGTGAGTTTAGCACTTTCCTTGATATACCTTGAAAATTATTCACATAATTGTATCATAAATttctggataaaagcatcagacAAAAGAATAAACATCTTTTGTACAGATTGATGGAAATTCCAGCAATTAACCAATTGATCGTGTCTTTCGCATACAGctcctttgtgtgtgttgatctcACAAGCGGTTTATCGAGCCGTCGAAGATCCTCGCTGCTCCGATTTGCTTGACTCTAGAGGATGTCGCTGTCTGGATTGCATTCTGTACTACGTTAGGATTGGATTGGAAGTGTGTCAGAGAACATCAGTACTGTTTTCTTTTGCAATAAAATTTCACTTATAATC

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0001654 eye development biological_process
GO:0007420 brain development biological_process
GO:0009790 embryo development biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07910 RAB18; Ras-related protein Rab-18

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU381586 lncRNA upstream 5053 17854548 ~ 17855258 (+) True G322233
TU381490 lncRNA upstream 73610 17721938 ~ 17786701 (+) True G322146
TU381461 lncRNA upstream 194098 17589072 ~ 17666213 (+) False npc1
TU381471 lncRNA upstream 228799 17631214 ~ 17631512 (+) True G322127
XR_004580280.1 lncRNA upstream 323151 17525571 ~ 17537160 (+) True LOC117599934
TU381693 lncRNA downstream 202300 18074329 ~ 18074748 (+) True G322324
TU381739 lncRNA downstream 326811 18198840 ~ 18199709 (+) True G322365
TU381778 lncRNA downstream 357366 18229395 ~ 18231463 (+) True G322398
TU381788 lncRNA downstream 466300 18338329 ~ 18343490 (+) True G322405
TU381790 lncRNA downstream 466300 18338329 ~ 18343490 (+) False G322405
XM_026946259.2 mRNA upstream 6441 17842449 ~ 17853870 (+) True yme1l1b
XM_026946215.2 mRNA upstream 194706 17640627 ~ 17665605 (+) True npc1
XM_026946216.2 mRNA upstream 223702 17570650 ~ 17636609 (+) True egfra
XM_026946305.2 mRNA upstream 342944 17514697 ~ 17517367 (+) True c1ql3b
XM_026946271.2 mRNA upstream 352924 17487387 ~ 17507387 (+) True gpt2l
XM_026946277.2 mRNA downstream 93864 17965893 ~ 17979122 (+) True wacb
XM_026946278.2 mRNA downstream 94159 17966188 ~ 17979122 (+) False wacb
XM_026946276.2 mRNA downstream 94163 17966192 ~ 17979122 (+) False wacb
XM_026946304.2 mRNA downstream 118696 17990725 ~ 17994678 (+) True bambib
XM_026946318.2 mRNA downstream 353892 18225921 ~ 18227140 (+) True si:ch211-162e15.3
XR_003404718.2 other upstream 228703 17570649 ~ 17631608 (+) False egfra
XR_004580277.1 other upstream 376634 17478834 ~ 17483677 (+) False fuz
XR_004580278.1 other upstream 376634 17478834 ~ 17483677 (+) False fuz
TU380835 other upstream 1007887 16851445 ~ 16852424 (+) False LOC117599970
trnag-gcc_20 other upstream 1673270 16186971 ~ 16187041 (+) True trnag-gcc_20
TU381774 other downstream 354533 18226562 ~ 18227233 (+) False si:ch211-162e15.3
TU381775 other downstream 354533 18226562 ~ 18227136 (+) False si:ch211-162e15.3
TU381842 other downstream 543788 18415817 ~ 18422631 (+) False pex5lb
XR_004580282.1 other downstream 943980 18816009 ~ 18871360 (+) True slc44a5a
TU383181 other downstream 2566673 20438702 ~ 20440561 (+) True G323534

Expression Profile