RNA id: XM_034297785.1


Basic Information

Item Value
RNA id XM_034297785.1
length 1853
RNA type mRNA
GC content 0.50
exon number 12
gene id cdc7
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 19006527 ~ 19014193 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atttaaaaaaatgctaaaacatcGGTATTGTTCGTGCCGTATAAGTCACGTGATCGCTTCAGTTTTAGCGCGAGTTTTTAGACGGATTAGCTGATTAGCAAGCGGCGCTACTTTTCTCAGAACAagatttttttatcGTCATGGAGACGCTTCAGAGGCTTCCAGCcagcagcacacacagtgtTGGGGATGTAAAACACTGTgaaaaagagacaaataaaaggaaaatttcCAgagaTGTTGAGATGGACATTGAATATCTGTATGAAGTTGTGCCACAGCTCTCCAGAGTTTTCCGAATTACTGACAAAATTGGAGAAGGTACGTTCAGTTCCGTGTATCTCGGCGAAGCCCAGACGAGCGACGGGACGAGAGAGAAGTTTGCGCTGAAGCATCTGATCCCTACGAGTCACCCGGTGCGCATCGCCGCAGAGCTCCAGTGTTTAACCGTCGCTGGCGGTAAAGAAAACGTGATGGGAGTGACATACTGCTTCAGGAAGGACCACCACGTGGTGATCGTCATGCCCTACGTGGAGCATCAGGCCTTCGTGGATATCGTTGACACGCTGAGTTTCGAGGAGGTTCGTcagtatatttatcatttactcAAAGCCTTGAAGCACATCCACGAGTTCGGCATCATCCACCGGGACATCAAGCCGACCAACTTCCTGTACAACCGGCGGGAGAAAAAGTACGCGCTGGTGGATTTCGGCCTGGCTCAGGGAACTCCTGACACTCAGATCGAGCTGTTAAAGGAGCTGATGGGACTTTGTAAAACGCCTCGTTCCGTGTTCGGCGAGAGAAACCTCAACAGCATAAACCCTACTAAGTCTCCCACAGATAAACCCGAAGTACATGTGATAAAACCTACAAAGACCGACGATGTCATCGCACGCAAGTTCGTCTCCACCAAACGCCGCCCTCTTCCTGCGCGGGCACCGGTGACCAGCCAGAAGACGAAACCCGTGACGCTCAACCCGTCTCTTACCTGTAACTGCTACATGACCGACCGCATCTGCAACATCTGTCTGTCCAGGAAGCAGCAGGTGGCTCCGAGAGCAGGAACGCCGGGATTCAGGGCTCCTGAAGTGCTGACCAAGTGCCCTGACCAAGGAACCGcTATTGACGTGTGGTCAGCCGGCGTCATCCTGCTCTCCCTCCTGAGCGGCAGATATCCGTTTTTCAAAGCCAACGACGACCTGATGGCGTTGACTCAGATCATGACTATCCGCGGCTCGAGAGAAACCATTCAGGCAGCTAAGAAATTTGGCAAGGCGGTGGTGTGTAGCCGCGAGCTTCCCCGACTCGACCTGAGGATTCTGTGCGAGACGCTGAGAGGATTGCGGCCCTGCGGTGACGACTCTCTTCCGGCAGAGTTTCAGGCCTCGCGTCACCCTGCAGACGTTAAAAAAGCGCAGCCTGGCAGCCGAGCGGAGAAACGGAGCAGCGCGGATAACGCCGCAGAATCACACGCCATGGGATGGGACAGAGTTCCTGATGATGTTTATGACCTGCTGGACAAACTGTTAGATTTAAACCCAGCGACGAGAATCACTGCAGCTACGGCACTACAGCATCCGGTGTTTAAAGATATCAgggatgaataaatatttatccaACAGTTAGTAATCCTCAGGAGGAAATCTCAACCAGCAGCGTAGCTGGAGTTCTGTTTGTGTGATGTATATGAAGATGAAGTGCATTAGTTCtgtaatatagtgtactataTGTACatggtgtatatttatttatccagtGTGATGTTGAGTTTTCTGAGATTTCATGAAATGGAGTTTGGCCCAATAGgtgcattacattacagtaacattttaataaacattttaagaaCA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU382280 lncRNA upstream 11904 18993758 ~ 18994623 (+) True G322817
TU382249 lncRNA upstream 21445 18964741 ~ 18985082 (+) False ssbp3a
TU382250 lncRNA upstream 21721 18944698 ~ 18984806 (+) False ssbp3a
TU382261 lncRNA upstream 47208 18959083 ~ 18959319 (+) True G322802
TU382194 lncRNA upstream 191710 18814614 ~ 18814817 (+) True G322747
TU382465 lncRNA downstream 93193 19107386 ~ 19109334 (+) True G322957
TU382490 lncRNA downstream 190485 19204678 ~ 19218238 (+) False gng12a
TU382511 lncRNA downstream 299686 19313879 ~ 19316048 (+) False LOC113546339
TU382639 lncRNA downstream 420037 19434230 ~ 19438075 (+) True G323104
TU382711 lncRNA downstream 498531 19512724 ~ 19523033 (+) False G323168
XM_026946356.2 mRNA upstream 4320 18995557 ~ 19002207 (+) True cdcp2
XM_026946195.2 mRNA upstream 22548 18951688 ~ 18983979 (+) True ssbp3a
XM_026946196.2 mRNA upstream 22548 18951688 ~ 18983979 (+) False ssbp3a
XM_026946200.2 mRNA upstream 69737 18931059 ~ 18936790 (+) True fam151a
XM_026946199.2 mRNA upstream 80954 18919067 ~ 18925573 (+) False cryz
XM_034314834.1 mRNA downstream 13688 19027881 ~ 19042630 (+) True rpap2
XM_034314836.1 mRNA downstream 13688 19027881 ~ 19042630 (+) False rpap2
XM_034314835.1 mRNA downstream 13690 19027883 ~ 19042630 (+) False rpap2
XM_026946360.2 mRNA downstream 59514 19073707 ~ 19077866 (+) True rpl5a
XM_034314913.1 mRNA downstream 80729 19094922 ~ 19106149 (+) True mtf2
XR_004580282.1 other upstream 135167 18816009 ~ 18871360 (+) True slc44a5a
TU381842 other upstream 583896 18415817 ~ 18422631 (+) False pex5lb
TU381774 other upstream 779294 18226562 ~ 18227233 (+) False si:ch211-162e15.3
TU381775 other upstream 779391 18226562 ~ 18227136 (+) False si:ch211-162e15.3
XR_003404718.2 other upstream 1374919 17570649 ~ 17631608 (+) False egfra
TU383181 other downstream 1424509 20438702 ~ 20440561 (+) True G323534
XR_004580310.1 other downstream 1623391 20637584 ~ 20659411 (+) False arhgef4
trnap-ugg_22 other downstream 1901211 20915404 ~ 20915475 (+) True trnap-ugg_22
TU383298 other downstream 2006996 21021189 ~ 21136847 (+) True G323615
TU383295 other downstream 2120926 21135119 ~ 21136847 (+) False G323615

Expression Profile