RNA id: XM_026946326.2


Basic Information

Item Value
RNA id XM_026946326.2
length 1468
RNA type mRNA
GC content 0.51
exon number 7
gene id gfi1aa
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 19043896 ~ 19053142 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCCAGGAAGTTCAGCCGCGGTATTTAAAGCGCgcgcagcagcagcaacacgtTCAGACCAGGACACCGCGCGCGCAGAGGCAACAGACCCTCGACCCTGAGAGCAAACATGCCGAGGTCATTTTTAGTGAAGAGCAAACGTGCTCACAGCTACCACCAACCTCGCAGCCTGGAGGATGACTACATCCGACTTGACGCTCTACtgacacacacctacacagAGCTCCAGGCCGAGTCTGACTGCTGTGAGGACGTGAATAAACGTGCAGGTCGATGCTCACCTGAGGGCAGCGCGGTGTGTACGGCCGAACATAAAGCTCAACACTCTCCGCTCAGCTgtgagggaagtgtgtgtgatcctCCAGCCGAGTACGAGGACGCTGTGTGGAGACCCAGATCGCCGTCTTCTTCTCCAGATGTGGATGAATATCCCTTATCGTCACCGGATGATATCCAACCTTTCGACCTGACCTTCCGCCCCTGTGCCTGGACACATAGCCGCTCGGAGCTCAGGCGCCTGGTTAGACCGTTTCAGCGGAGTCACGTGACACGTGAGACGCCATCGATCGGCGTTTACGGCTCCACAGAGAGGCTCGCCGAGGCCTTTTTCTCCAATCAGTCCCCGTTCAGAGGATTTTCTCAGGAGGAGTACAGCTCACTGGCTACAGATCTGCTGAAGAGCCGCACACGAGGATATTACGCCGATTTCAAGCCCATCCCTGAGAACGCTGAGATCAAATCGCATTCTGATGTCTTGTGCACACGACTGCAAATTAACGGCTCTTACAAGTGTGTCAAGTGCACTAAGgtgTTTTCTACGCCTCATGGCTTAGAGGTCCACGCCCGGCGCTCACACAGCGGCACGAGGCCTTTCGCCTGTGAGCTGTGCGGGAAAACGTTCGGTCACGCGGTCAGTCTGGAACAACACAAAGTCGTCCACTCGCAAGAGAGGATTTTTAGCTGCAAAATCTGCGGAAAAAGCTTCAAGAGGTCGTCTACTCTGTCCACACACCTGCTGATCCACTCGGACACGCGGCCGTACCCCTGCCAATACTGCGGCAAGAGATTCCACCAGAAATCCGACATGAAGAAACACACGTTCATCCACACAGGAGAAAAGCCGCACAAATGCCAAGTGTGTGGAAAAGCGTTCAGTCAGAGCTCTAACCTTATCACACACAGCCGGAAACACACCGGCTTCAAGCCGTTCGGCTGCGACTCGTGCGGCAAAGGCTTCCAGCGCAAAGTGGACTTGAGGAGACACCGAGAAACGCAGCACGGCCTGAAATAAGAGACGCTTCCTTTTAAAATCAGAATATAATTCATattctttatataaaaacactataaagagcatCAGTTAATACTAAACAGACTTTCTTTATtgacttttattattaactaaACTTTATGCGAATTTACGGTTATTTATAAAATCTTGTGTTTGAATGTTTACTTTTAGGTCCAT

Function

GO:

id name namespace
GO:0030218 erythrocyte differentiation biological_process
GO:0060215 primitive hemopoiesis biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09223 GFI1; growth factor independent 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU382356 lncRNA downstream 57090 18985196 ~ 18986806 (-) False mrpl37
TU382364 lncRNA downstream 87279 18942578 ~ 18956617 (-) True G322889
TU382315 lncRNA downstream 231519 18812010 ~ 18812377 (-) True G322849
TU382296 lncRNA downstream 278897 18764759 ~ 18764999 (-) True G322831
TU382292 lncRNA downstream 287249 18756373 ~ 18756647 (-) True G322827
TU382523 lncRNA upstream 2345 19055487 ~ 19066748 (-) True G323007
TU382529 lncRNA upstream 21858 19075000 ~ 19077917 (-) True G323011
XR_004580356.1 lncRNA upstream 144918 19198060 ~ 19204380 (-) True LOC117600001
TU382620 lncRNA upstream 164701 19217843 ~ 19220218 (-) True G323088
TU382623 lncRNA upstream 177212 19230354 ~ 19275396 (-) True LOC117599938
XM_034314837.1 mRNA downstream 16013 19016482 ~ 19027883 (-) True glmna
XM_026946327.2 mRNA downstream 37517 19003326 ~ 19006379 (-) False tceanc2
XM_034314784.1 mRNA downstream 49260 18985173 ~ 18994636 (-) True mrpl37
XM_026946193.2 mRNA downstream 94580 18936784 ~ 18949316 (-) True acot11a
XM_026946335.2 mRNA downstream 125732 18914202 ~ 18918164 (-) True tyw3
XM_026946361.2 mRNA upstream 25581 19078723 ~ 19091689 (-) True dipk1aa
XM_026946363.2 mRNA upstream 29402 19082544 ~ 19091688 (-) False dipk1aa
XM_026946372.2 mRNA upstream 137172 19190314 ~ 19197494 (-) True LOC113546473
XM_026946371.2 mRNA upstream 137172 19190314 ~ 19197493 (-) False LOC113546473
XM_026946127.2 mRNA upstream 173608 19226750 ~ 19229596 (-) True gadd45aa
XR_004576919.1 other downstream 37517 19003239 ~ 19006379 (-) True tceanc2
TU382290 other downstream 288303 18753772 ~ 18755593 (-) True G322826
trnav-aac_21 other downstream 296652 18747172 ~ 18747244 (-) True trnav-aac_21
TU381951 other downstream 649073 18394249 ~ 18394823 (-) True G322538
TU381602 other downstream 1171788 17855329 ~ 17872108 (-) False LOC113546399
TU382527 other upstream 21858 19075000 ~ 19077917 (-) False G323011
XR_004580317.1 other upstream 445419 19498561 ~ 19507197 (-) False kdm4ab
TU383446 other upstream 1142152 20195294 ~ 20195672 (-) True G323726
XR_003404720.2 other upstream 1256355 20309497 ~ 20309573 (-) True LOC113546475
XR_004576925.1 other upstream 1261995 20315137 ~ 20315212 (-) True LOC117595748

Expression Profile