RNA id: XM_034314617.1


Basic Information

Item Value
RNA id XM_034314617.1
length 3037
RNA type mRNA
GC content 0.45
exon number 5
gene id dmbx1a
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 19284612 ~ 19297263 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCACTGCGCGTCCGCAGGAGCGCGAGACtggaagaaacacacacacacacacacacacacacactgagacactttGGATGGACTGAGAAGGCTTGCAGAGATTGAAGGAAGTCCGGAAGTGGACGCGAGtacaagcaaaagaaaatattatcaGAGGTTTGACTTCTGGAGGTTCCAGGATACTTTGCGCGTTTTTTTCATTTCTCggctcagaaacacacagagACGTCACACGCCATGCAGCACTACGGCGTGAACGGGTATTCCCTCCACGCCATGAACTCACTGAGCGCCATGTACAACCTCCATCAGCAGGCGGCTCAACAGGCCCAACACGCACCCGACTACCGGCCATCCGTACACGCACTCACACTCGCTGAGAGGCTGGCTGGCTGCGCATTTCAAGACATTATACTCGAGGCTCGTTACGGCTCTCAGCATCGTAAGCAGCGGCGGAGTCGCACGGCCTTCACCGCGCAGCAGCTTGAGGCTCTGGAGAAAACGTTTCAGAAAACACACTACCCGGATGTGGTGATGCGTGAACGGCTGGCCATGTGCACCAACCTGCCCGAGGCGCGAGTCCAGGTGTGGTTCAAGAACCGGCGGGCGAAGTTTCGTAAGAAGCAGCGCAGCCTGCAGAAGGAGCAGCTCCAGAAGCAGAAGGATGCCTCACCTGAAGGAACATTAGGAGCAAGCGATAAGACCGACGCTCCCTCCACTGTAAACCTGGAGAACCCGCTTCCTCCTTCGTCCacgtcctcttcctcctccatcgAGGCTGAGGGGCCATCGGAGCTGAGCGTGGAGCTAAACGTCACCTCAGCGGAGCAGTCAGGGAGCGAGTCGGCCACAGAGGACAACACAACCGACAGGGAAGAAGAGATAAAGCTTCACCAGGATGACATGAAGGTGGACAAGTCTGGGAGTCTTTCTCCTCCCTGTAAACGCCTCAGCCCCAAACCAGAATCTCCCCTCGGCTCACCGGTGATCACATCCGGGGCTAACGGCGTGACTGGAGGCATCTCTCAGAGCCATTCATACTCATCATCACCGCTGAGCCTCTTCCGTCTACAGGAGCAGTTCCGCCAGCACATGGCTGCTACTAACAGCTTGGTGCACTACCCATCGTTCGACATGGCCGCCCCGTCCTCCTTGCCCTACCTGGGCATGAACGTGAGCGTCCCAGCACCGCTGGGTTCACTGCCCTGCCAGTCGTATTACCAGTCTCTGTCCCAGCACGCGCAGCAGGTGTGGAGCGGTCCTCTGCTGCAGGCCTCCGCTGCGCTGCCCGGCCACAACAGCAAGACAAGCAGCATCGAGAACCTGCGGCTACGCGCCAAGCAACACGCTGCCTCTCTCGGCCTCGACACCATGCCCAACTAAACACTAACTGCGACAAAACAGGACACGCTCGGCTGAATGAATCCCCCTAGCTACCACCTGGATCCGCAAAGACACTTCACAAAATCTATGTAAAGAAATGTAATGTCATTTCTgagcaacttttttttcctccaagtattttttatttaagtttttgtcatcagtgaaaagtaaaaaattctGCAGCGGTTTTCGAATTgagaaaaatgcatttactCTATTTTCTGGACTAGAAGTTGCACCTTAGTATAAGACACACCACTCTAAATAAAGTCTgctaaaaacaataaatttatACACAATGTTTTATAGGATGCTGTATGGATAGCATTTTActtacacatttatttgtagTTGTTTTAGAAATAAGCAAACAACATAAGGCTAATAGCAAAATTCTCACACGCATCATTTCACTGTATATGTAAGCAAAAAAAGTGCCTTATATTCCAGAAAATAAGGTAAATgtgattcattttcagtagGTTTCATTGAACgtattaagaaaatgaaacacaatCAGCCTGTGTGCAGGTTGAAAATGTCcaacaaaaaattaatgctaatgctactttttttttttttataacacacTTACCTTTCTTCCCATTTGTACAGGTACGCGTTACAGTAAACCTGCTTAATTGTAGCACTTTTTCCAGAAAAGCTTCGTGCTCTGCATGCACTGAGGCCGTTCTAATTCAATTAGTCAAGTGCTCaaattacacattacataatTCTGTACGTAACGTGTAAATCCCTGCCTTGTAATACCAGATTGCTTAATTAAACCTGACTAATTCACCTGTTTTATGGCCAGCATTTAAACCATGTTAAACTGCAAATGGCCGgataattagaaaataatatcACTGACTCCATATGCAAAgcttttaattacatttagcCTTGAGGAAGAAATGCAATTACAGTCCATGCATATCATTTCAGATCGCTGTATATCTAACGCTCCGAGGGGAAAATAATTGCAATGAACAGAAAattcaagcctttttttttccccagtgcaTGTTAGCAAGGTGGTGCGATTAGCCGAGACGGTggatataaattaataaataaaaacgctctgattttttttattgctgtgttAAAGTGACATAATTTAATACACcgaatatttgttttattttttttccatttggggaaaaaaaaaatttgaaaaaagaaagctCCAAGCACTTCCATACACAGGAAGTCCATATGGAAAGCACTTCCTCCTCTCGCCGTGTCTGTAAACTGTTTTACTCTGTAAATTACACAAAGTCTTTTATCTATAAATGTTTACTGGTAAGgcaaatgtaaaaagttttaTGTTTTAGATTGAGAAGGACGCGTCCAGCCTCCCGTGATGATCCTCGTAGCTGTCCGTTGTTGAGATTTGTACGAGGTGGACGCTAGTCCTGCGTCAGATATTTAACCTTTAACAGTCTGGtcgtatatatatctatctatgtaACTCCTCCAGTTGGTTTTCATTGTTGCTGTGCTCATAAAGTTTTACTCGCTTGCACTGTTTCCATCACAGTAAAGTGGTGAACTCGTAGTGTACACTGGTGCCGGGTAAgaacaaatatatacattatacgTTTTTCTCTATTACAACTGTAGGCTTGAGAACTTGTAAAATAA

Function

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0030901 midbrain development biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K24893 DMBX1; diencephalon/mesencephalon homeobox protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU382490 lncRNA upstream 66374 19204678 ~ 19218238 (+) False gng12a
TU382465 lncRNA upstream 175278 19107386 ~ 19109334 (+) True G322957
TU382280 lncRNA upstream 289989 18993758 ~ 18994623 (+) True G322817
TU382249 lncRNA upstream 299530 18964741 ~ 18985082 (+) False ssbp3a
TU382261 lncRNA upstream 325293 18959083 ~ 18959319 (+) True G322802
TU382511 lncRNA downstream 16616 19313879 ~ 19316048 (+) False LOC113546339
TU382639 lncRNA downstream 136967 19434230 ~ 19438075 (+) True G323104
TU382711 lncRNA downstream 215461 19512724 ~ 19523033 (+) False G323168
TU382712 lncRNA downstream 215461 19512724 ~ 19523033 (+) True G323168
TU382760 lncRNA downstream 285054 19582317 ~ 19583323 (+) True G323206
XM_026946342.2 mRNA upstream 64383 19204658 ~ 19220229 (+) True gng12a
XM_026946336.2 mRNA upstream 96980 19163675 ~ 19187632 (+) True wls
XM_026946174.2 mRNA upstream 124469 19146634 ~ 19160143 (+) True scinlb
XM_026946173.2 mRNA upstream 125407 19143608 ~ 19159205 (+) False scinlb
XM_026946323.2 mRNA upstream 147831 19110288 ~ 19136781 (+) True ccdc18
XM_026946130.2 mRNA downstream 16597 19313860 ~ 19316206 (+) True LOC113546339
XM_026946140.2 mRNA downstream 59149 19356412 ~ 19361261 (+) True ptger4c
XM_026946175.2 mRNA downstream 760324 20057587 ~ 20062476 (+) True glula
XM_034314586.1 mRNA downstream 841681 20138944 ~ 20150410 (+) True elovl1a
XM_026946357.2 mRNA downstream 841682 20138945 ~ 20150229 (+) False elovl1a
XR_004580282.1 other upstream 413252 18816009 ~ 18871360 (+) True slc44a5a
TU381842 other upstream 861981 18415817 ~ 18422631 (+) False pex5lb
TU381774 other upstream 1057379 18226562 ~ 18227233 (+) False si:ch211-162e15.3
TU381775 other upstream 1057476 18226562 ~ 18227136 (+) False si:ch211-162e15.3
XR_003404718.2 other upstream 1653004 17570649 ~ 17631608 (+) False egfra
TU383181 other downstream 1141439 20438702 ~ 20440561 (+) True G323534
XR_004580310.1 other downstream 1340321 20637584 ~ 20659411 (+) False arhgef4
trnap-ugg_22 other downstream 1618141 20915404 ~ 20915475 (+) True trnap-ugg_22
TU383298 other downstream 1723926 21021189 ~ 21136847 (+) True G323615
TU383295 other downstream 1837856 21135119 ~ 21136847 (+) False G323615

Expression Profile