RNA id: XM_026946330.2


Basic Information

Item Value
RNA id XM_026946330.2
length 1823
RNA type mRNA
GC content 0.43
exon number 3
gene id penka
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18791345 ~ 18797861 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagtgcgcacacacacacacacacacacacagagtggtgGAGTTAAAGCCTGAACACCATCGCTGCTCATCatcacagtgctgctgctgccgtgtgtgtgtgtgtgtgagtgagtgagtgtgtgtgtgcaggtctcTGATCTGCGTCCTCTCACAGGGACTTTAGTCAACCCCACTGAGGCTTCTGTGCCGAGAAAATCTTCATCCTGCACTTCCCCGACTCAGAGCTCCGGAGGACTGACACCACAAACACAGCTCATGGCAGTGATGGTGAACGTGTGCTGGATGTTGGCACTGAGTGCGTGCTTGGTGCTGAAGGTGCAAGCGGAGTGCACTAGGGAGTGCGCACTCTGTCTGTACGGCTCATTAGCGGCGCAGCAAGCAGACAGCAGCACCGGGCCCTGCACGCTCGAGTGTGGAAGCAGCGTGGACCTGAGGAAGCTGGGCCTCTGTCGGAACGCTCTGACCGAAGACGAGCGTGCCACCGTGGATCAGAAACCAGAGTCTGACAGCACCGAGCACCTTCTGGCCAAGAAATACGGCGGCTTCATGAAACGCTACGGTGGCTTCATGATGAAGAAGACCTCAGAAGACCTCGCGAAGGACGAAGCCGATGGAGATTCCGAGGAGGAGCTGGACATCCTGAGGGAGATCCTGAGGGTGGGCCTGGATGCCAACGAGCCGGGCAAGGAGCTCCAGAAGCGCTACGGAGGCTTCATGCGCAGGGTGGGCAGACCGCAGTGGCTCGACGAGCCCAAACCTTACGGCCTTCACAAACGCTGGGAGGACGAGGGAGCGGAGAACGTGTTGCCTGAGACACACAAGAGATATGGAGGCTTCATGGATTAGGAGCTGATGCGAAGATTCAAAACGGACACTCATCGTTGCAAAACAATCCCCAATGTGTGCACAGCTAACGACTTAAcgttaatttattattaatgtattaatatgtgccaagtcattttctttttgctcttttgctTTGGCTATAGAGATGAGTGATTCATGATGAGTGATTCTTTGAGCGACTCTTTTAATTGAATCAGATTAGTGAGTCAATTTGCAAGTGAatcaaaatgtttaatgttcattttattattttaatagtgTGTATATTTctacaattacaataaaattatacattaaattaaattaaacattaaattaaattaaattaaattaaataagagCCTCTTAtatgttttttctgtcttgatAAATTATGGCGTGTTATTAGATTCACGAATCAAGATTCAAGAGATTTAACAATTTAACTAAATTActtctattttttaataaatggaaGATATATAGATctatttcagtaaaaaaaaactatcatgTAGATAACCAATAATAATGAACCCATATTGTAGCTTGTTTAATGGCGAACCAAATGAATCAGCAATCGATTCATTTAAATACGTAGTTCAAAAGAATCAAATCACTAAAGTGAGTCGTGATGCCCATTGCTTCTTTGCTAATGCATATATATCTCCATAATAAAGTCTGTTCAGTagtttaagtgtgtgttttagtgggTTATTATTTTACACCATGCCTATAGCTATACATATACATGATTTTTTGTACAGATAAAGAAAACTGTCGAGCACAATAATCACAACATTGCGTTCTCCATCAGGTAGTGAAGTGATTCGTTACACCAATTCAAGTgaattggttttattttggagtatGTACAAGATTTCATCTACgtgttgatgatggtgtgtaTCTTGCATTTATCTCATTATGTGTTTCAGTCATTTCTGATTAATTGGTTGTACAGAGTACAATAAATTCATCTGACTGCAGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU382184 lncRNA upstream 25743 18765192 ~ 18765602 (+) True G322738
TU382137 lncRNA upstream 70906 18715395 ~ 18720439 (+) True G322696
TU381857 lncRNA upstream 351479 18439167 ~ 18439866 (+) True G322462
TU381841 lncRNA upstream 358643 18432326 ~ 18432702 (+) True G322446
TU381819 lncRNA upstream 417462 18370727 ~ 18373883 (+) True G322429
TU382190 lncRNA downstream 13244 18811105 ~ 18811652 (+) False G322744
TU382191 lncRNA downstream 13323 18811184 ~ 18812335 (+) True G322744
TU382193 lncRNA downstream 14642 18812503 ~ 18812848 (+) True G322746
TU382194 lncRNA downstream 16753 18814614 ~ 18814817 (+) True G322747
TU382250 lncRNA downstream 146837 18944698 ~ 18984806 (+) False ssbp3a
XM_026946325.2 mRNA upstream 27857 18756729 ~ 18763488 (+) True bpnt2
XM_026946146.2 mRNA upstream 37285 18747527 ~ 18754060 (+) True mffb
XM_026946147.2 mRNA upstream 37285 18747527 ~ 18754060 (+) False mffb
XM_026946207.2 mRNA upstream 74793 18692206 ~ 18716552 (+) False LOC113546386
XM_026946133.2 mRNA downstream 1342 18799203 ~ 18810210 (+) True sdr16c5a
XM_026946110.2 mRNA downstream 18148 18816009 ~ 18866798 (+) False slc44a5a
XM_034314552.1 mRNA downstream 56701 18854562 ~ 18866798 (+) False slc44a5a
XM_026946198.2 mRNA downstream 121206 18919067 ~ 18925573 (+) True cryz
XM_026946199.2 mRNA downstream 121206 18919067 ~ 18925573 (+) False cryz
TU381842 other upstream 368714 18415817 ~ 18422631 (+) False pex5lb
TU381774 other upstream 564112 18226562 ~ 18227233 (+) False si:ch211-162e15.3
TU381775 other upstream 564209 18226562 ~ 18227136 (+) False si:ch211-162e15.3
XR_003404718.2 other upstream 1159737 17570649 ~ 17631608 (+) False egfra
XR_004580278.1 other upstream 1307668 17478834 ~ 17483677 (+) False fuz
XR_004580282.1 other downstream 18148 18816009 ~ 18871360 (+) True slc44a5a
TU383181 other downstream 1640841 20438702 ~ 20440561 (+) True G323534
XR_004580310.1 other downstream 1839723 20637584 ~ 20659411 (+) False arhgef4
trnap-ugg_22 other downstream 2117543 20915404 ~ 20915475 (+) True trnap-ugg_22
TU383298 other downstream 2223328 21021189 ~ 21136847 (+) True G323615

Expression Profile