RNA id: XM_026946338.2


Basic Information

Item Value
RNA id XM_026946338.2
length 1692
RNA type mRNA
GC content 0.43
exon number 2
gene id xcr1b.2
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 17075730 ~ 17081658 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTAAACACGTAAGTCCTAACACCGTTTACAAAACTGTGAGTTTCacagcttctttctttctgagtAGACAAATAAGTAAGCTCACTGCCAAgcagcagaggaaaaaaaaagaggaagaaccACCAGCCAAAACCTCTCATCTGTCTTATTTTAAGACAGTCGAAACTTTCCGACTTCAAGCAGGACATCTACGTGTGGATCTGGTTTTTGGGATGTTTTCTATTAACTCAACAACACCGCTGACCTACacaagaatgaaagaaaataacgTCACTGATTATCAGAATGACTCCTATGAATATGATTATGGAGACTTAATCACACACTGTCATTTGGAGAAATACGATCAAATCACAGGAGTAAGTTACATTGCCATCTGTTGCTTCAGCTTCCTCGGGAATGGCATGCTCCTCTATGCTCTGGCCCGCTTCGAAGATCTCAAAAGGGTCACCATGCTTTTTCTACTCTTCTTGGCATTTTTTGACCTGTTGTTCACGCTGACGCTTCCCTTCTGGGCTGTTGATCACCTGAAGGAATGGATCTTTGGAGATATTGCGTGTAAGATCCTAACTGGGGCCTATTTCGTTGGAATATATGGAAGCCTCATTCTACTGACGGCCATGACAGTCGACTGCTTCTTTTTTATCGTTGTGCGCAGCCAGTGGTTCACTCGCAGAAGAAGGCTCAACTGTGCAAGGGCAGCTTTTGCGGGGTCGTGGATCATCAGTGTAGGAGCCTGTCTGAAAGAAGCCCTGTCCTCTGAGGTTAAAAACGTGAATTCTGTCCACAGCTGCGACACCGTTCCTTCTCCAGATGACCAGGCGGGTTACTACACACAATTTGTCATGCTCTTCGCCATTCCACTGGTAATCATCATCCTGTGCTACGCCAAAATCCTGCACACGCTCATGTCGAGCTCGGGACAGAGAAGGTATAAGACGTTGCTGGTTGTGTTGCTCATAATCATGGCTTTCGTCGTATGTTGGGGACCTTATCATATTGTCATAATCCTGATGCCGACTCATCGTAACAACGATTGCGCAAAGGAACGTCAACTCCAGCAAACTTTTGTTGCCTGCCGTATCCTTGCCTATTTCCACTGCTGTATCAATCCACTGTTGTTTCTGATCAGAGGAAGGTCCAGAAAAATCCTGTCCAGGCTTCTGTTCTGCCAGCCTCAACACAGGAGATTTGAACCATCAGACAGATCTTCTGACCCGAGTCACTTCAACATTCACCAACACTTCAGCATGGCAATTCCACAAAATGTAACAGAGCTTAAATCACTTTGAGAAGTGACAATGAACTCAGTGGTGGTGACTCAAAACTGGTACATTTCTCCTTTTTCTAAACATCAGAATCCAGCTGAAGCTCTTATCAGGAGTGAAGTTCAAACCCAAAAGGGCATTCATCCATTCAATCCTAAGCCCAACACCTTAACCACTGGGACATCCAAGTGCACAGGGACAGCTAAACTCCTGCGACTTAATCTTATCTGTTCAGCCATTCTTACAATGTAATGTATCCAAGTTTCAAGTTTCTGACTTATGACAAATTAAACATCAGTGGGGTCTTTAATTAGAAATTCCACACAAACATATGTCATATTAAGAAAAATCATTTTGTCTACAATCAACAAAGGATAAAATACATCTAATCATGTCAGTAATACAAAATCTGTTGCCTAACTAT

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation
ko04672 Intestinal immune network for IgA production
ko05164 Influenza A
ko05140 Leishmaniasis
ko05310 Asthma
ko05321 Inflammatory bowel disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380963 lncRNA upstream 114996 16958745 ~ 16960734 (+) True G321704
TU380843 lncRNA upstream 182706 16892813 ~ 16893024 (+) True G321602
TU380827 lncRNA upstream 216152 16792714 ~ 16859578 (+) True G321591
TU380813 lncRNA upstream 283292 16792128 ~ 16792438 (+) False LOC117595733
TU380818 lncRNA upstream 286123 16789186 ~ 16789607 (+) True G321585
TU381407 lncRNA downstream 399727 17481385 ~ 17482562 (+) False fuz
TU381408 lncRNA downstream 400255 17481913 ~ 17483644 (+) False fuz
XR_004580280.1 lncRNA downstream 443913 17525571 ~ 17537160 (+) True LOC117599934
TU381461 lncRNA downstream 507414 17589072 ~ 17666213 (+) False npc1
TU381471 lncRNA downstream 549556 17631214 ~ 17631512 (+) True G322127
XM_026946138.2 mRNA upstream 3773 17066201 ~ 17071957 (+) False xcr1b.1
XM_026946137.2 mRNA upstream 3773 17069317 ~ 17071957 (+) True xcr1b.1
XM_026946355.2 mRNA upstream 84618 16975923 ~ 16991112 (+) True ghrhra
XM_034314649.1 mRNA upstream 119170 16952977 ~ 16956560 (+) True LOC117599965
XM_034314648.1 mRNA upstream 128384 16941842 ~ 16947346 (+) True ftr67
XM_026946359.2 mRNA downstream 157268 17238926 ~ 17293166 (+) True cntnap2b
XM_026946203.2 mRNA downstream 213506 17295164 ~ 17311204 (+) True cul1a
XM_026946145.2 mRNA downstream 231424 17313082 ~ 17321037 (+) True mcm6l
XM_026946118.2 mRNA downstream 242253 17323911 ~ 17347484 (+) True ahrrb
XM_034314560.1 mRNA downstream 267252 17348910 ~ 17361297 (+) True exoc3
TU380835 other upstream 223306 16851445 ~ 16852424 (+) False LOC117599970
trnag-gcc_20 other upstream 888689 16186971 ~ 16187041 (+) True trnag-gcc_20
trnag-gcc_19 other upstream 890163 16185497 ~ 16185567 (+) True trnag-gcc_19
trnag-gcc_18 other upstream 891588 16184072 ~ 16184142 (+) True trnag-gcc_18
TU380434 other upstream 943366 16131335 ~ 16132364 (+) True G321257
XR_004580277.1 other downstream 397176 17478834 ~ 17483677 (+) False fuz
XR_004580278.1 other downstream 397176 17478834 ~ 17483677 (+) False fuz
XR_003404718.2 other downstream 488991 17570649 ~ 17631608 (+) False egfra
TU381774 other downstream 1144904 18226562 ~ 18227233 (+) False si:ch211-162e15.3
TU381775 other downstream 1144904 18226562 ~ 18227136 (+) False si:ch211-162e15.3

Expression Profile