RNA id: XM_026946357.2


Basic Information

Item Value
RNA id XM_026946357.2
length 1603
RNA type mRNA
GC content 0.47
exon number 8
gene id elovl1a
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 20138944 ~ 20150410 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTACTCTCAGTTAAATTCAGAGCTGAGGTTCTCATTCACTTCTGCTCTGTCACTACCAACAAACAcaccttctttttttctgttttttttccctcatgctGCTGGAAATGGTGTTTAAATGAAGACCTTCAGGGCTGAAGCTCAGAAACAGCCACATTTCCTCTGACTTTAGTTTGGAGTAGGCTCAGATTTGGAGGGCTGAGTGTTTGGCACATTGGGCCTGAGGTGTGAAGTAACAGtttacaaTTCAGCTGAAGTGACACAAGAAGGATGATTCAGGAAGTGTTTTCAAATATCATGAGGTTCTACGACTACCTCCTCAAAAGGACAGATGCACGAGTACGGGATTACCCGCTGATGCAGAGCCCGATCCAGATGACGCTCATCTTACTGAGCTACGTGTTTCTGGTGCTGTACGTCGGGCCTCGCTACATGGCCAACCGCAAACCTTACAACCTCAAAACCCCCATGGTCATTTACAACTTCTGCATGGTGTTCTTCAACGCCTACATCGTTTACGAGTTCATGATGTCCGGCTGGGCGACGACTTTCACGTGGAGATGTGACCTCATCGACGTCTCGACCAGCCCGCAGACTCTCAGGaTGATCCGAGTGGCCTGGTTGTTCtacttttcaaaatatattgaaCTTCTAGACACTGTTTTCTTTGTGTTGAGGAAGAAACACAGTCAGGTGACTTTCCTGCACATCTTTCACCACTCGTTCATGCCCTGGAGCTGGTGGTGGGGCATCACTCTCACTCCGGCCGGGGGAATGGGTTCCTTCCACGCCATGGTGAACGCGATGGTCCACGTCATCATGTACACGTACTACGGCCTCTCCGCAGCCGGCCCGCGCTTTCAGAAGTACCTGTGGTGGAAGAAATACATGACCGCTATCCAGCTGACTCAGTTTATCGTGGTGTCTGTCCACATCTCTCAGTATTACTTCATGGACTGTGAATACCAGGTGCCCATCTTTATCCACCTCATCTGGATCTACGGCATGTTCTTCTTCGTCCTCTTCTCCAACTTCTGGATCCAGGCTTACGTCAAGGGCAAGCGGCTCCCCGTCAAAAGCGAAGGCAAACCCAAGCAAAACGGCCATGCTAATGGCACTGAGGCGGCCACGTTGGCCAACGGCACACACCTGGACAACGGCACTGTGCACTACACAAACGGGTTTGTTGTGAACGGGAAAGTAAAGGAGGtataaagaaaaaggagaaaaaatatacatgaaGACAGCTAGCACTAGCAGAGCTAGCAGGAAGGACTTAGCGAGAATGATCCTGGGTTTGTGGATGTTTTTGTGAGATCACAGGGGAGATGACGAGGCACGGGTCTGTTCACctgctttgttttttgtatttatttgtccACGGTGCATGAGAAAGATGTCCAGCTTCACAGATGTCACGttgactttttttctgttttcagcaCGTATGATTCTCCCGGTTTCTCCAGACATGCATCTGAATCGAGtactactgtaaataaatatttgtgcaaAGTTAGGTGGTATGGATGGAATGACTTTTTTTATGTGtataacttaaaaaataaaccacttttatattaaatgttgcataaatattca

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU382947 lncRNA upstream 224930 19847999 ~ 19914015 (+) True G323358
TU382809 lncRNA upstream 477713 19660616 ~ 19661232 (+) True G323249
TU382800 lncRNA upstream 494375 19643823 ~ 19644570 (+) True G323240
TU382760 lncRNA upstream 555622 19582317 ~ 19583323 (+) True G323206
TU382712 lncRNA upstream 615912 19512724 ~ 19523033 (+) True G323168
TU383098 lncRNA downstream 92389 20242618 ~ 20303253 (+) True G323471
TU383113 lncRNA downstream 117482 20267711 ~ 20335698 (+) True G323485
TU383131 lncRNA downstream 168728 20318957 ~ 20393150 (+) True G323499
TU383114 lncRNA downstream 182376 20332605 ~ 20353169 (+) True G323486
TU383134 lncRNA downstream 209738 20359967 ~ 20393712 (+) True G323500
XM_026946175.2 mRNA upstream 76469 20057587 ~ 20062476 (+) True glula
XM_026946140.2 mRNA upstream 777684 19356412 ~ 19361261 (+) True ptger4c
XM_026946130.2 mRNA upstream 822739 19313860 ~ 19316206 (+) True LOC113546339
XM_026946329.2 mRNA upstream 841682 19284612 ~ 19297263 (+) False dmbx1a
XM_034314582.1 mRNA downstream 7089 20157318 ~ 20180634 (+) False cc2d1b
XM_034314584.1 mRNA downstream 7750 20157979 ~ 20180634 (+) True cc2d1b
XM_034314581.1 mRNA downstream 7750 20157979 ~ 20180634 (+) False cc2d1b
XM_034314583.1 mRNA downstream 7757 20157986 ~ 20180634 (+) False cc2d1b
XM_034314809.1 mRNA downstream 87997 20238226 ~ 20281067 (+) False clcn2a
XR_004580282.1 other upstream 1267585 18816009 ~ 18871360 (+) True slc44a5a
TU381842 other upstream 1716314 18415817 ~ 18422631 (+) False pex5lb
TU381774 other upstream 1911712 18226562 ~ 18227233 (+) False si:ch211-162e15.3
TU381775 other upstream 1911809 18226562 ~ 18227136 (+) False si:ch211-162e15.3
XR_003404718.2 other upstream 2507337 17570649 ~ 17631608 (+) False egfra
TU383181 other downstream 288473 20438702 ~ 20440561 (+) True G323534
XR_004580310.1 other downstream 487355 20637584 ~ 20659411 (+) False arhgef4
trnap-ugg_22 other downstream 765175 20915404 ~ 20915475 (+) True trnap-ugg_22
TU383298 other downstream 870960 21021189 ~ 21136847 (+) True G323615
TU383295 other downstream 984890 21135119 ~ 21136847 (+) False G323615

Expression Profile