RNA id: XM_026946366.2


Basic Information

Item Value
RNA id XM_026946366.2
length 2805
RNA type mRNA
GC content 0.42
exon number 4
gene id them6
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16931308 ~ 16937488 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAATGTACTGAAGAGTCAGCTGTGTTAGAGTTAGCTAAATCTCTATGCTTAGTAAGCAGAGGCTAATTTTGAATGAGTGACAGTTCAGCTGTGGAGTGTGCTTGTATAGGGAGCAAGAGGCATTTGTGACTGGACCGCAGGCTGTCGAGGCAGTGAGTGCTGGAGAAGTGGGTCTGCGGCAATGGGTGACCTGCTGTTGTGGGTGTTAGCCGTCTTGCTGGTACTCTTCTGCTCCTTGGATGTGTGGTACTACCTTCGCCTGGTGGCCGTTTTACTccgagcctggttcctctctcCGGTGTTTGACATCACAGCAGAGCAGTCTGTCGGAGGCTACGTCCTTCTCCACGATATCGACATGTGTCACATGAACAACGCGCGCTATCTGCGCGAGTGCGACTTCGCCCGCATTTCCCTGTACGCCCGCAACGGTGTGCTGAAGGCCCTGAGGGCCCTGGGGGCCACCATGGTGGTGGGTGCGACTACCATGCGCTACAGACGGCCCCTGTGCGTGGGCGAAAAGTTTGAGCTGCGCACTCGTATCGTCACGTGGGACGGCAAAGCGTTCTATCTTGAGCAGCGCTTCGTGTCTAGAAAAGATGGAATGGTGGCAGCCGTCATGTTCTGCAAACAGAACGTGCTGCGTGGCAGCCCAGACCAAATCCTCCAGCACCTGTGCAAGAGAAAGGTTGAAGCTCCTGAGTTTCCTGAAGAGCTGCAGCACTGGATCAGCTTTATAACGGCAAGCAGCCAGGCTTTAAAGGCCGAGAGTGGACTGGAGAAGAAAAGCGAATGAGGACTGACACGAGACAATAATGTGTACATGTTTACCTGCTAAACATTCTGATAAACACATGGAACATGCATCAGATGTAAACTTGGATGcgattcagtgaatcatttatATGAATCAGTCGAATCGCACAGCTGGAACATCAGTAATGTTTTTGTGCCATTTCACAACTTTGTGTACAAGTTGATTTCAGATTAATGCAGATGTTAATATGtgcattgtacttttttttttttgtgtgtgtgtaaattatttctggattaaaaaaaaatacaacgtTTCAGTGACACTAACATTAGAATCCTATTGGAGAAAACGATAAGAAAAGTTCATTGGTGGGGTTGTTGGTCACGTGACTTGCGGAAACGCGGAAGTATCGCCTTGCTGCTGCCGGTGTTTCGTTAGCGTGAGTACATCAAAAATGCATTTCATGAGGAGTTTTTAAATCACCAGAGATAGCGACAGTCCCTGCGAAATTATTTAGGTGTGAATTTGTTTAATGAgaatcattttggagaaatattTTATCGCTGTGTGGTGAACAGTGTTAGCCTTCATAAAATGCACGAGCTCTAAGACTAGCATGCACTTCATCTTTTTACTGCACAACTGATGAGAATAAgggcttgtttttttaaaaaaaaaaatctcgttATGGCAttaatatatatcaaaatatgtCTTTCCCTTtgtggagaaataaataaataaatagtaaatagtgtgtgttttgtcagaaAATAAGATCCGGACCTCAAGCACTTGGACAAATGAGGGTTCAGTTATAAACTGTTTTCAGTCAAGGTGGCTAGATTGTTGCCTGATAAAAATCATCATTTATTCGCTCAGAAAGAAGGGAAAATAACAGATTTTCtcataggggtgtgtgtgtgatgtgtgatatggCAAAAGATATTAAGATACTTGAATATTTAGGAATGTTTTCAGTgccatattttaaaaacttattttaaataaaggtaccaaactgctTTCCTTGTCCCTGGTTTGGTGCCATCAAGGCTTCAGCTTTCTTATCTGTGCAGGTGCATGTGATGTACCTTGAATTAACTTTTAGTAAAGCTTTAGAGGTACATCAGGCATCCAATTATGTACTTTAGATTACTAAACTGTATTCGTGGTTCCATAGTGAAGATATAAGCTATAAACTGAAGGTACAGAAGGTGTACCCTTCATAGTACCAGCTCAAGTGGCAAGGAAAATGACAATATATTTCCGAGAATCTAGGGGTGAGTGATATATGATATGGAAAAATGTCATATTATACTCTACGATATTCACTATATAAAGTATTAAGGTCGTTTTTATGTGATATTTGAACACCTTTACATTTTTCTcctctacactctcagaaataaagatacCTGCCTCTACTCTTCCTTGTTGCTGCAGTGGTACTATCAAGTATACATCTTTTtaacctttagtgtgtatctttcaTTTGGAAACATGCACATGGTGTACCTTGAATGAGCTTTTAGAGTGAACCTTAAAAGCTACATCAGGAGTCCAATTATGTAGCTCAGATTACTTTTAAGGGCGCACTATGTTCCTATTTCCATGTGAAAGGTACGTATATACTAAAAtatgtacccttgatggtaccgacccagcaacaaggaaaagtacaaaTTGGTACCTTTACTTCTAAGAGCAtcacggggaaaaaaaaaaacaaaaaacagacaaaatcaTAGGGGTGGGTGAGCCCGAAATACATTTCCAACCATTTACaccaagctccgcccccaaaactTATAGTGGTTtaactagagttagcatgctaaccaGAGTTCCCATTAGCAGGGACTGTCATGACATGACTTTCAAATGCACTCGGacattcaactgcttgaaagccaagttacaaCTTTATAAACATGCAATTTCTCCTCATAATAATTTATGAGGATGTGAAGGGGCATTGGGGGTGTGTCtataaaaatgactgacaagaggccagTCCAAATCCAAACAAACATTCTGGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380843 lncRNA upstream 38288 16892813 ~ 16893024 (+) True G321602
TU380827 lncRNA upstream 71734 16792714 ~ 16859578 (+) True G321591
TU380813 lncRNA upstream 138874 16792128 ~ 16792438 (+) False LOC117595733
TU380818 lncRNA upstream 141705 16789186 ~ 16789607 (+) True G321585
TU380826 lncRNA upstream 151110 16779865 ~ 16780202 (+) False LOC117599973
TU380963 lncRNA downstream 21257 16958745 ~ 16960734 (+) True G321704
TU381407 lncRNA downstream 543897 17481385 ~ 17482562 (+) False fuz
TU381408 lncRNA downstream 544425 17481913 ~ 17483644 (+) False fuz
XR_004580280.1 lncRNA downstream 588083 17525571 ~ 17537160 (+) True LOC117599934
TU381461 lncRNA downstream 651584 17589072 ~ 17666213 (+) False npc1
XM_034314719.1 mRNA upstream 48554 16873882 ~ 16882758 (+) True LOC113546333
XM_034314718.1 mRNA upstream 48554 16876673 ~ 16882758 (+) False LOC113546333
XM_034297724.1 mRNA upstream 62366 16860823 ~ 16868946 (+) True LOC117595734
XM_034314717.1 mRNA upstream 71630 16851485 ~ 16859682 (+) False LOC117599970
XM_034314714.1 mRNA upstream 71635 16838768 ~ 16859677 (+) False LOC117599970
XM_034314648.1 mRNA downstream 4354 16941842 ~ 16947346 (+) True ftr67
XM_034314649.1 mRNA downstream 15489 16952977 ~ 16956560 (+) True LOC117599965
XM_026946355.2 mRNA downstream 38435 16975923 ~ 16991112 (+) True ghrhra
XM_026946138.2 mRNA downstream 128713 17066201 ~ 17071957 (+) False xcr1b.1
XM_026946137.2 mRNA downstream 131829 17069317 ~ 17071957 (+) True xcr1b.1
TU380835 other upstream 78888 16851445 ~ 16852424 (+) False LOC117599970
trnag-gcc_20 other upstream 744271 16186971 ~ 16187041 (+) True trnag-gcc_20
trnag-gcc_19 other upstream 745745 16185497 ~ 16185567 (+) True trnag-gcc_19
trnag-gcc_18 other upstream 747170 16184072 ~ 16184142 (+) True trnag-gcc_18
TU380434 other upstream 798948 16131335 ~ 16132364 (+) True G321257
XR_004580277.1 other downstream 541346 17478834 ~ 17483677 (+) False fuz
XR_004580278.1 other downstream 541346 17478834 ~ 17483677 (+) False fuz
XR_003404718.2 other downstream 633161 17570649 ~ 17631608 (+) False egfra
TU381774 other downstream 1289074 18226562 ~ 18227233 (+) False si:ch211-162e15.3
TU381775 other downstream 1289074 18226562 ~ 18227136 (+) False si:ch211-162e15.3

Expression Profile