RNA id: XM_026946372.2


Basic Information

Item Value
RNA id XM_026946372.2
length 2458
RNA type mRNA
GC content 0.40
exon number 10
gene id LOC113546473
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 19190314 ~ 19197494 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCAGCCAGTTCCAATAAAAGCTGAAAGCAGTCCTCCCCAGCGCAGCACTCCTGACAGGGAAGGCTGAGAGATGGGTCGCTGTTCCTAATGCTGGTAAATCCTTAAACACTCAGATAGAAACTGGGTTCATTCGTCATTTATACACACCAGTGAATTTTAGGATGACTGTTACACCGATTTGACCTGATGCCAAGTGCAAACTGCAAAGAATAGATAATGGGTGCCTTAGTTATAATCCTGCAAGCAATCCTACTTCTCTCCAGTTTTGGCTTCACTGAATCTTCTGAGCTTCTGCAATGCTTTAACGATTATGACACCGAGCTAAAGTGCAGTTTGACCTTGGCTGAACCTAACAGTTGTTCTGAAAACCAACTCAGTGCTTCAGTATACAGCAGATTGTTTACATGCCATTTTGATGAAATCCGTCCTGGTGCATGTGAATGCAGAATCCAGGTGCAAGGGTTTGTTCTGAGAGAGATATTCACAGTAAATGTGCTGAAAGGAAACAAGGCTTGGCACACAGACAATATCAGCACTGAAGCAAGCATTAAGCCTAGAAGACCAATCATCACGTCAGTCATTCAGAAGACAAATGGAGACTTTCTCATCACCTTGAACACCACCTACATACAGAAAACGTTTTCTGAATCCCTGGTGGTGGAGCTCCAATATGGCATTGATGGAAGCAATGATTATGTGACACAGCTTTTGAGAAACGGTCAAACTGCATATGAGCTTGTGGGCAGAAACCTTCAACCTAATTCCAAATATATTTTGAGAGCGAGAGTGAAATCAAACTACCCACCTAATAAGACATTCAGTGAATACAGTGAAGCACATGTGTTCAAGACACCACAATCATTACAAAACCTTCTCAAAATAATAATCCCCATATTATGTCTCATTCTGATCATTTGTATATCTTCAATCTACTTCTGGTTCAACAGAATCCTAAAACCATGGTGGGACAAGATTCCTACTCCCAAATTTTCTACGAATTTTGTAAAACAGGTCCCACAGTTACTGTTACTTCAAACGGAGTTCTCGTCTGTCAGTCTTGATTCAACAGCAAACCACAACGCCAAGAAGATATGTGTGGAATCTTCTCAAGTCCAGGGTGAAGACAGTCACTGTAGTCTCAGTCTGGGGAAAGGTGTCGATTCAGCGCCACTGATTTACTCCACGACAGCCTACGAGAGAGTGGACGAGAACAGCTCTGAAGGTGTTCGGTTTGAGCTTGAAAAGGGACACCAATCTGCAAACGCCAACCAAGTATATGAAAATCAGCAGTCAAATGAATTCAGCTCAGGAATCAAAAATAGGTCCTATTCGCAATCAAACTCTAGCGGCTCATCCTTTTTTAATCATCCAGTTTTTCCGAGTGAGAACGTCCTGGTGCTGCCGAAGCACCTGGACCCAATGATACAGACAGATTTTGAGTACAGCGTGTGGAATGGTTGTACAGACTCTGGAAACTCTACACTGATTCACATCACACCCCCCAACAATGAGACGGCTGTGGTTCTCGGATATCAGAGCATCGGTGACCACGATGCTCTTAGCACTTGTAACGATCCAATCACAGAGGAGCCATTTAGCATCAAGAAACCACAGGATGTTCTGATTTCTGTCCATGATAGCATCATTATGCCAGTGGAGGAAGGGTACCAAGCTTTTCCAAGTGTTGCCTGAAACACTGGAGAATGGAAGAACTACAAAGTTAGAATTAGATTAGAACGTCTCTCAGGGCAATATTACGGCAAATGGTCATTTCTCATTTTGCATATCTTTCCAGGCATTCAAATGGACTCGAGGTTTGATGTGACATCTTCGGGTAGAACTTccttatgtatatttatatgtcaATTTCACGTCAAATTCCTTGGTATTTGATATGCAGTAGTGCTACACTATGCATTTGTGTTGCATATACCATGAAGATGAACATCACTAGGAAGCAAAATCATAATTCTCTCTTAAACTTAAATGTTTTGGATGTCCTTTTGTTATTTAGTTACCCACTGTATCGTTACTTCAAGCTGATGTTTAGCTTGAATTTATGCTGTTGTTTTCCCCAATTTAAGCTTTTAACGCACATCTCAAATCCTCTATATACACTAAATACATAAAGCTGCTCTATATAGCTGCACTGAGCTACAGGAAAACGCTGACTCCAAAAAGCATGTTGGAAATTCTACATGAAAGTTCAGTGCCATAGAGCCAAAATGTTTCTTAACAGACTTACATTAGAGGTCTTAAACATTCAAATATGCATTCATGTGCAAATTTCTGAAAATTCTGTGAAATTCATTCTGACACTTtcattatttacagtttttcatttagtgcaagtataataaaatgttactaaGGTTTAAGACAGATGTTCTGTACTGCTATACATCTCTGTGaatatgtttacattattatataaagtCTCGGGGGTTTGAACAGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU382529 lncRNA downstream 112397 19075000 ~ 19077917 (-) True G323011
TU382523 lncRNA downstream 123566 19055487 ~ 19066748 (-) True G323007
TU382356 lncRNA downstream 203508 18985196 ~ 18986806 (-) False mrpl37
TU382364 lncRNA downstream 233697 18942578 ~ 18956617 (-) True G322889
TU382315 lncRNA downstream 377937 18812010 ~ 18812377 (-) True G322849
XR_004580356.1 lncRNA upstream 566 19198060 ~ 19204380 (-) True LOC117600001
TU382620 lncRNA upstream 20349 19217843 ~ 19220218 (-) True G323088
TU382623 lncRNA upstream 32860 19230354 ~ 19275396 (-) True LOC117599938
XR_004580284.1 lncRNA upstream 33159 19230653 ~ 19275390 (-) False LOC117599938
TU382624 lncRNA upstream 117017 19314511 ~ 19315470 (-) True G323092
XM_026946361.2 mRNA downstream 98625 19078723 ~ 19091689 (-) True dipk1aa
XM_026946363.2 mRNA downstream 98626 19082544 ~ 19091688 (-) False dipk1aa
XM_026946326.2 mRNA downstream 137172 19043896 ~ 19053142 (-) True gfi1aa
XM_034314837.1 mRNA downstream 162431 19016482 ~ 19027883 (-) True glmna
XM_026946327.2 mRNA downstream 183935 19003326 ~ 19006379 (-) False tceanc2
XM_026946127.2 mRNA upstream 29256 19226750 ~ 19229596 (-) True gadd45aa
XM_026946204.2 mRNA upstream 112656 19310150 ~ 19313674 (-) True nsun4
XM_026946129.2 mRNA upstream 119144 19316638 ~ 19330869 (-) True pif1
XM_026946340.2 mRNA upstream 167252 19364746 ~ 19384317 (-) True LOC113546452
XM_026946333.2 mRNA upstream 195759 19393253 ~ 19456415 (-) False st3gal3b
TU382527 other downstream 112397 19075000 ~ 19077917 (-) False G323011
XR_004576919.1 other downstream 183935 19003239 ~ 19006379 (-) True tceanc2
TU382290 other downstream 434721 18753772 ~ 18755593 (-) True G322826
trnav-aac_21 other downstream 443070 18747172 ~ 18747244 (-) True trnav-aac_21
TU381951 other downstream 795491 18394249 ~ 18394823 (-) True G322538
XR_004580317.1 other upstream 301067 19498561 ~ 19507197 (-) False kdm4ab
TU383446 other upstream 997800 20195294 ~ 20195672 (-) True G323726
XR_003404720.2 other upstream 1112003 20309497 ~ 20309573 (-) True LOC113546475
XR_004576925.1 other upstream 1117643 20315137 ~ 20315212 (-) True LOC117595748
TU383462 other upstream 1186707 20384201 ~ 20411806 (-) False LOC113546371

Expression Profile