RNA id: XM_034297686.1


Basic Information

Item Value
RNA id XM_034297686.1
length 2791
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC113543345
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 545670 ~ 561137 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGATCTCTTTGCTTGGCTATGTCATCAATAAGGAAGGAGTTCTCATGGGCCAAGACAAGGTCACCGCTGTAACTAACTGGCCAATCCCCACCACAGTTAAGGAGCAACAGAGATTCTTGGAGTTCACCAATTTTTACCGAGAAATTTCTTCCACAGCCTTTTCTCCTCCAGTCCACAGCCACCTCACTACCTTCCATCTCATACCGGCTACAGTGAATCAGACTGAGGCTCGGGCAGCTTGCAGAGAAAATTACATCGACCTCGTCACTCTGTACTCTGATGAAGACAACACTGAACTGGATAATAGCAGTTACGGCTGGATCGGTCTCTATCGCGGTCAGTTCAGTGAGAAATGGTCTAATGGTGATCCTGTAACATTCAGAAATCTGACAGGGGATTGTGGGACATCGAGCTGCTGTGCTGCTATGAAACCTGATGGTTCATGGGAAAGTGCTCAGTGCACAGGGACGAGATATTTCATGTGCTATGAACAAGCTGCTTCTTCTCAGACTCCTAATTATCATCTAATCCTTGAGAATAAGACCTGGTTTGGTGCTCAGCGTTACTGCAGGGGGAACTACACTGACCTGGTCAGCATCAGAGATCAGCAGCAAAATGAAGAGGTGAAGATTAAAGGGTTAAACAGCAGCACGTCCTTCTGGATCGGCCTGCTGCGTGATGACTGGCAGTGGACTGATGGAGGAAACTCCACCTACAGAAACTGGGCGAGTGGTCATCCTTTATCATCACCATACAACTGTGTACGAGCATGGCTAGGGAAATGGATTTCAGAGCCGTGCAGTAGTAATTACCCCCCTCTGTGCTACGgtGACTCTAACATACGACTCATTGGTGGCATTAACCCCTGCTCTGGTCGAGTGGAGATCTTGCATGGTGgccagtggggaacagtgtgtgatgatggctGGGATATAAATGATGCAGAGGTGGTGTGTAGACAGCTTGGATGTGGTAATGCCACTAGTGCTGCTCAAAGCACCCACTTTGGTCAAGGAAGTGGCCCAATATGGCTGGATGATGTTGGGTGTTCTGGAAGTGAACGCATCATCACACAGTGCTCTCATAATGGATTTGGGATACACAATTGTGTTCATGGTGAAGATGCTGGTGTAACCTGCGCAGCCTTTTCTCCTCCAGTCCACAGCCACCTCACTACCTTCCATTTCAGTCCGGGTGGCATGAATCAGGCTGCGGCTCGGGCAGCTTGCAGAGACAATTACATCGACCTCGTCACTCTGTACTCTGATGAAGACAACACTGAACTGGAGAATATGATGATGAAGGCTGGTGTTGGCGCAGGATGGATCGGTCTCTATCGCGGTCAGTTCAGTGAGAAATGGTCTAATGGTGATCCTGTAACATTCAGAAATCTGACAGGGGATTGTGGGACATCGAGCTGCTGTGCTGCTATGAAACCTGATGgttcatgggaaagtcttcagtgcACAGTGACGAGATATTTCATGTGCTATGAACAAGatcCTTCTTCTCAGACTCCTAATTATCATCTAATCCTTGAGAATAAGACCTGGTTTGAAGCTCAGCGTTACTGCAGGGGGAAATACACTGACCTGGTCAGCATCAGAGATCAGCAGCAAAATGAAGAGGTGAAGATTAAAGGGTTAAACAGCAGCACGCCCTTCTGGATCGGCCTGCTGCGTGATGACTGGCAGTGGACTGATGGAGGAAACTCCACCTACAGAAACTGGGCGAGCGGTCAACCTTTATCATCACCATACAACTGTGTACTACTGTGGCAGGGGAAGTGGATTTCAGAGCCGTGCAGTAATTATTACTACACTCTGTGCTACGCTTCCATCCATGTGAGTGATGTGGCTCTGAGCTGGGAGAAAGCGCTGGATTACTGTCATGAAGGGAACAGGGCTGGAATTCTGAACATCGATTCTGAAGCTGAACAGGAAGAGTTGGAGTCTGAGCTCAGGAGGAGGCGTGTCCCCCCAGGGTCTCTGTGGGTGGGGCTTGGACCGAACCGTCTCTCTGAGATGAAGGCGTCGTCCCGTCCGCTGACCTGCGAGGAcgtaaagagacagacagaaccTCCGCTGTCTCACTGccctgctgacacacacactgcagaagcAGCACCTGATTATGTGATGGACTCTGCTGAACTTCGAGTCGTGtgtaaattgaaataaaagGCGGTTTTCTCGATGCTGGAAGAACAgagcactgcacagtttaggGTTTTCCAGCACTAACTCACCTGAACCCTTCATTATGCACTTGCTCACTAGgtgatgagttgaatcaggtgtcaTAGAGCAGGAAAAAGCCTAAAGTGTGCAGGAACtgttcacacactcagagcTTTACACACCAGTTCACATTCACAATCATATTCAGAATATGCACTTAAGGCTTTCAGATGAattcatacaaatacacacatttttaagcTGTTAATCCTTTTCTCCAAATTCCTGTTTGAGATAAAATTCATGAAAGTTGTTTCTTTTCTATTATCATTTCAGCatataataagaaaatgtaattatattaaCTTTTGTTGTGATACCTTTTGTGTTGTTTCTCTTTATTTGCAGCAGGCGAGTGTTTTTAATGATCTGATTTTACTAAAGTAGAGTTTTTGGGCTTTGGGGTTTAGTAGCTGAATAAACACTGATGTTGAGTTTAGAAACTATGGATGTTCTATATTAATACAATGTAATCTGATCTTTTTACagtatattcttttttttattcttctttattttttattctaaatgcaactgtgtttttattttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU369833 lncRNA upstream 44281 496710 ~ 501389 (+) False atpv0e2
TU369834 lncRNA upstream 44281 496710 ~ 501389 (+) False atpv0e2
TU369835 lncRNA upstream 44281 496710 ~ 501389 (+) True atpv0e2
TU369838 lncRNA upstream 44281 496710 ~ 501389 (+) False atpv0e2
TU369861 lncRNA upstream 62457 482927 ~ 483213 (+) True G312237
TU369841 lncRNA downstream 13104 574241 ~ 576923 (+) True G312221
TU369918 lncRNA downstream 150357 711494 ~ 712297 (+) True G312280
TU369914 lncRNA downstream 152884 714021 ~ 717291 (+) False LOC113543349
TU369915 lncRNA downstream 154502 715639 ~ 759328 (+) True G312277
TU369922 lncRNA downstream 178326 739463 ~ 743129 (+) True G312283
XM_034297765.1 mRNA upstream 2627 217927 ~ 543043 (+) True LOC117595741
XM_034297764.1 mRNA upstream 2627 217938 ~ 543043 (+) False LOC117595741
XM_034297762.1 mRNA upstream 23644 505627 ~ 522026 (+) True LOC113543344
XM_034297763.1 mRNA upstream 23644 505627 ~ 522026 (+) False LOC113543344
XM_026940836.2 mRNA upstream 45332 496689 ~ 500338 (+) False atpv0e2
XM_034314814.1 mRNA downstream 55581 616718 ~ 677782 (+) True mre11a
XM_034314815.1 mRNA downstream 55614 616751 ~ 677782 (+) False mre11a
XM_034314816.1 mRNA downstream 55636 616773 ~ 677782 (+) False mre11a
XM_026941468.2 mRNA downstream 122669 683806 ~ 694338 (+) True LOC113543348
XM_034297687.1 mRNA downstream 143641 704778 ~ 717278 (+) True LOC113543349
XR_004576918.1 other upstream 232942 275159 ~ 312728 (+) False snap91a
TU369780 other upstream 352436 189539 ~ 193234 (+) True pnrc2
TU369781 other upstream 352436 189539 ~ 193234 (+) False pnrc2
TU369797 other upstream 370129 174238 ~ 175541 (+) True G312191
TU369775 other upstream 450745 93899 ~ 94925 (+) True G312172
TU370232 other downstream 259418 820555 ~ 838522 (+) False jph1b
TU370320 other downstream 567788 1128925 ~ 1131683 (+) False paxip1
TU370328 other downstream 570746 1131883 ~ 1136020 (+) False paxip1
XR_003404390.2 other downstream 1404603 1965740 ~ 1977309 (+) True c21h5orf22
XR_003404395.2 other downstream 1572077 2133214 ~ 2143313 (+) False tgs1

Expression Profile