RNA id: XM_034297688.1


Basic Information

Item Value
RNA id XM_034297688.1
length 6152
RNA type mRNA
GC content 0.53
exon number 42
gene id LOC113533480
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 15594435 ~ 15648744 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGAGCGGAGGACTGACGAGCGAAGCTTGCACGAGACGTCCCGAGCAGAGCAGACAGAGAAGCCCGCGCGCCTGAGAGGGAGACACTAAACCCAGAAGATTCTGAGCTGAAAATCCTctcatcttttttcttctaCACAAAAAGCGACGgggcagaagtgtgtgtgtgtgtgtgtatgtgtgtgtgctgaaccCGGGGCGTGTGTAAACCGGACATCACCGAATCACAGCACGTCCAGGCTGTCCCGTTCTCGACCGGCGATCTGGTAGAGGACAGCGGAGGACAGCAAAAACACACCGAGCCTCTGAGAAGCGATGTCACTTCTGTGTGTTGGGGTGAAGAAAGCCAAGCTCGATGGACCCCAAGAGAAGTTTAACACGTATGTGAGTCTGAAGGTACAGAATGTTAAGAGCACGACGATCGCAGTGCGGGGCAGCCAGCCAAGCTGGGAGCAGGACTTCATgtttgagatAAACCGGCTGGATCTGGGGTTGACAGTGGAGGTGTGGAATAAAGGGCTGATCTGGGACACCATGGTGGGCACCATCTGGATTCCGCTGCAGAGCATCCGCCAATCAAATGAAGAGGGTCCAGGGGAGTGGCTGACTCTGGACTCCCAGGTCATTATGGCCGATAATGAGATCTGCGGCACCAAAGACCCAACGTTCCACCGAGTGCTCCTTGACACACGCTTCGAACTGCCACTGGATATCCCTGAAGAGGAAGCTCGCTACTGGGCTAAGAAACTGGAACAGCTCAATGCCATGAGAGACCAGGATTACTCATACCAGGAGCAGCAGGAGAGGCCACTTCCTGTTCCCGGGAACCAATGCTGTAACTGGAATTTGTGGGGAGACCAGCAGAACGAGGACCCAGATAGCGCAGTGGATGACCGGGACAGTGATTACCGCAGTGAGACAAGTAACAGCATGCCACCACCATTCTACAGCACATCACAGCCCAACGCCTCGGTCCACCAGTATCCCATGGGTCAGCAGCATCGCTCCAACCGAGCCACCTACACTCGCTCTATCCACAGCTGTGACATCATCGACTACGACCACCAGAGAGCAATCAGTCCGGCAGGAAGCTATGCATCATCAGCAGAGTTAAGCCATTGCAGCTCACAGCTAAGTGAGGAAGAGTATGGTGAGCGGGAGCTGTATGATGAGAATGACTCCTACCACTCATGCCACTCATCCGTCTCCTACAGCAAAGGCTCTCCTGACTGGGAACCAGACGAGACAACAGGTGCCTACAGTGATGAGGGTGCCTACAGCAAAGATGGTGGTGAGGAAGGTGCCCTTTATGAAGAAGATGGTGACCCATATGCTGAAGATGCTGACTTGTACGAGGGTGAAGAGGAGGACTTCAACTATAATGATGAAGATCTGTACCCTGTGGATGAGGCTCTCAGCGAAGATCAGGAGCCTTCATACACCCCAACCCCTACCAGCACTGCACCCAAATTGGCTGTGCCATCAACCTCCAGGCCACCACTGGAGAAACAGGCATCCTTGCATCAGCAACCACCAACACAGCAGGTGCCACAGGACCAGAATGCAAACCAGATGGCCGGTCCAGCTCCTACACACCCAACAAATCAAGCTCCTACCCAACCACCACCAACAAATCAAgctccaaacaaaccaaaccataCACAGCAGCAGGCCAGACCACCTCTCCAGCAACAGCATTCCACAGGTCCCATCCCATCTGTCCAGTCCTTCTTTGCTATGGCTAAACCTCTAACTGCTGTTTTTGGGTTGGGTGGATCTATGTCAATGTCCTCACAGCCTCCTGCACCCACACCCCAACCCCAAAGACCACAACCACAACCTGCAGCGCCTCAGCCCCAAGCTGCACCAGTCCAACCTCCAGCTTCTGGAGTCCAGCAAGCAGCTCCAATTACAGCCAAACCCACAGAATCCCCAACCCAGCCTCCTACAACCACTGCTCAACCTTTATCCCCTGAAGCCAAGCCAACCACACCAACAGAGGAAACACAGGTCATTGAGGAGCCACCAGTGCAAGATCAGCCACCTCCAAAGGATGAGGAGATTCTGGTAGAAGGGTCTCCtttggaggaaaaagagagagaggtcacccctccaacaccaccaccggAGGAGAAGGAACCAGAGCCTGAACCAGATAGAGAGCCAGAAGTTGAGGAGGTGAAGGAGCCCGTAGACCCAGCAGTACGAGCTAAAGAGAACTGGCTACGGCTCTTCAACAAAGTCCGACAGCAGCTGCAGGAGGAACGGGGAGAAACAGATTCTCAGTCTCTTTGGTTTGGAAAGGGCGGAATGGGAGGAGCTTTGTACAGCATAGACAGCATGCCTGACCTACGCAAGAGGAAAGCCATCCCATTAGTCCGGGACCTGGCTATGTCTTTGGTTCAGAACTCTCGTAAAGCCGGAATCACATCTGCTATGGCATGTAGCACACTCAACAATGAGGAACTGAAGAGTCACGTGTATAAGAAGACCCTGCAGGCTCTGATCTACCCCATCTCCTGCACGACCCCCCACAACTTCGAGGTGTGGACAGCCACTACACCCACCTACTGTTATGAGTGCGAGGGGCTGCTGTGGGGTATCGCCCGGCAGGGTATGCGCTGCACCGAGTGCGGGGTCAAATGCCATGAAAAGTGCCAGGACCTGCTCAATGCTGACTGCCTGCAGAGAGCTGCTGAGAAGAGCTCTAAGCACGGTGCAGAGGACCGCACTCAGAACATCATCATGGTCCTGAAGGACCGCATGAAGATCCGTGAACGCAACAAACCCGAGATCTTTGAGCTCATCCAGGAGGTGTTCGGCGTGGCCAAGACAACCCATGGGACCCAGATGAAGCAGATCAAGCAGAGCGTTCTCGATGGCACGTCCAAATGGTCAGCCAAGATCAGCATCACAGTGGTCTGTGCTCAAGGACTGCAGGCCAAGGATAAGACAGGCTCCAGTGATCCTTACGTCACCGTCCAGGTGGGCAAGACCAAGAAAAGGACCAAGACCATCTATGGCAACCTCAATCCTGTCTGGGACGAGAGTTTCCACTTTGAGTGCCACAACTCATCCGATCGCATAAAGGTGCGAGTGTGGGACGAGGACGATGACATTAAATCTCGTGTGAAACAGAGGTTCAAAAGAGAGTCTGATGACTTCTTGGGCCAAACCATCATCGAGGTCCGGACTCTCAGCGGAGAAATGGACGTGTGGTACAACTTGGACAAGCGCACAGATAAATCGGCCGTGTCTGGAGCCATTCGCATGCACATAAGTGTGGAAATCAAAGGAGAGGAGACAGTGGCTCCATACCATGTCCAGTACACCTGCCTACATGAGCACTTATTCCACTACACCACTGAAGAGCAGAATGGCGGCGTGGTGAAGATCCCTGACGCTAAAGGAGACGACGCCTGGAAAGTCTATTTTGAGGAGACAGCGCAGGAGATCGTGGACGAGTTCGCCATGAGATACGGAGTGGAGTCCATCTACCAAGCCATGACGCACTTTGCATGTTTGTCATCTAAGTACATGTGTCCTGGTGTGCCAGCTGTGATGAGCACCCTGCTGGCCAACATCAATGCTTACTACGCCCACACCACACAGTCCTCCAATAACGTCTCCGCCTCAGACCGCTTCGCCGCCTCCAACTTCGGGaAAGAGAGGTTTGTGAAGCTGCTGGACCAACTCCATAACTCTCTGAGAATAGACCTCTCTATGTACAGGAATAATTTCCCTGCTAGCAGTCCTGAGCGGCTACAGGATCTAAAGTCAACTGTGGATCTACTCACTAGCATTACCTTCTTCAGGATGAAGgtcCAGGAGCTGCAAAGTCCTCCTCGAGCCAGTCAGGTGGTTAAGGACTGTGTGAAGGCCTGTCTGAACTCTACATATGAGTACATCTTCAACAACTGCCATGAGCTCTACAGTCGGGAATATCAGACAGATCCGTCTAAGAGTGTTCCTCCAGAGGAGCAGGGCCCCAGCATCAAGAACCTGGACTTCTGGTCCAAACTCATCACCCTTATAGTTTCCATTATAGAGGAAGACAAGAACTCCTACACACCCTGCCTCAAccaGTTTCCTCAGGAGCTGAACGTTGGGAAGATCAGCGCTGAGGTCATGTGGAATATGTTCGCTCAGGATATGAAGTATGCCATGGAGGAGCACGAGAAGCACCGGCTGTGTAAGAGCGCAGATTACATGAACCTTCACTTCAAAGTCAAGTGGCTCTACAACGAGTACTGCAAAGAGCTGCCATGCTTCAAAGGCTGCGTGCCCGAGTACCCTACGTGGTTTGAACCATTTGTGATCCTGTGGTTGGATGAGAATGAGGAAGTGTCCAAGGACTTCCTGAATGGTGCCCTGGTGAGGGATGCAAAGGATGGGttCCAGCAGACATCGGAGCATGCCCTGTTCTCCTGCTCGGTGGTTGATGTTTTCTCTCAGCTGAACCAGAGCTTTGAGATTATCCGGAAGCTGGAGTGTCCCGACCCTCAGATTGTTGGCAACTATATGAAGAGATTCGCCAAGACTATTGGGACTGTACTTCTGTCTTACGCTGACATCATTGCCAAGGATTTTCCCAACCACTGCAATAAGGAGAAAGTGCCTTGCATCATTATTAATAACATCCAGCAACTCCGGGTGCAGTTGGAGAAGATGTTTGAGGCCATGGGAGGCAAAGACCTGAACGTGGAGGCCAGTGACTTCCTGAAGGAGCTGCAGGTCAAACTGAACAACGTCATGGACGATCTGAGCAGGATCTTTGCGGTCAGtttcCAGCCTCACATTGAGCAGAGTGTGAAACAGATGGGTGACATCCTGAGCCAGGTAAAGGGTGCTAACGTTCCTACTAATGGAAACGGCAGCCTCACACAAGACGCCGACAACGTGCTTCAGCCCATCATGGACTTCCTGGACAGCAAtTTGACCTTATTTGCAAAGATCTGTGAGAAGACAGTGCTGAAGCGGGTCCTCaaggagctgtggaagctggtCATGAACACCATGGAGAAAACCATTGTTCTTCCCCCACTTACTGACCAAACAGGCACACAGCTCATCTTCAATGCTGCTAAAGAGTTGGGTCAGCTCTCCAAGCTAAAGGAGCACATGGTGCGAGAGGAAGCTAAGGCACTCACCCCCAAACAGTGTGCAGTTATTGAGCTGGCACTGGACACCATAAagcaaTACTTCCATGCTGGTGGTGTGGGCCTGAAGAAGACATTTTTGGAGAAAAGCCCGGACCTGCAGTCTCTGCGCTACGCTCTGTCACTCTACACACAAGCCACAGACAAACTCATCCGCAAATTCGTCCAGTCACAGCACAATCAGGTTCACGGAGGTAAAGGGGTGAGGTGCACTCCTAGTGAGGATGTGTACCCAGAGAAGGCCTCGGGTGTGGATGACGCAGTGGGAGAGGTGTGCATGACCGTGGAGATCCTCAGCGACCCCAACACTGGAGGACACAAAATCAATGTTAAAGTGGTGGCAGCCAATGACCTGCGCTGGCAGACTCAGGGCATATTCCGGCCCTTCGTAGAGGTCTACATTATTGGACCTCACCTCACAGACAAGAAGAGGAAGTTTGCCACCAAGTCCAAGAACAACAGCTGGTCCCCGAAATTCGGAGAGTCCTTCCAATTTGTCCTGGGCAGTGAGCTGGGCCCCGAGGGCTACGAGCTGCAGGCGTGTGTGAAGGACTACTGCTTTGCACGAGAGGACCGTACAGTTGGCATGGCTGTGCTGCAGCTAAAAGACCTGGCATCGCGAGGTGGTGGAGCCTTCTGGTTGCCCCTGGGCAAACGTGTGCACATGGATGAGACGGGCCTTACCGTGCTGCGAATCCTCTCACAGCGCAACAATGACGACGTGGCCAAAGAGTTCGTCAAGCTCAAATCTGACCAGCGCTCGGCCGAAGAGGGCCGAGGGAGTTAGGAGACTGGAGATCTGTGTCCACACTGTACACACGCACAAGAAATGgaaagatgcacacacacacacacacacgtaaacatgAACCATGTGAACAGGAAACAGTCAGTACAGTAAACACTGACTTGTATATAGACAAATGTGAGTTAGAGAAATACTGTTGTGCCTCTCCAGAGGCATAAGCACTAAAGCAATCAAACCTGATTCAAG

Function

GO: NA

KEGG:

id description
K15293 UNC13A_B_C, MUNC13; protein unc-13 A/B/C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380184 lncRNA downstream 1819 15592160 ~ 15592616 (-) True G321032
TU380032 lncRNA downstream 134019 15380135 ~ 15460416 (-) True G320897
TU380013 lncRNA downstream 290410 15303811 ~ 15304025 (-) True G320880
TU380004 lncRNA downstream 307558 15286084 ~ 15286877 (-) True G320871
TU380003 lncRNA downstream 308494 15285638 ~ 15285941 (-) True G320870
XR_003403423.2 lncRNA upstream 38338 15687082 ~ 15724356 (-) False LOC113533563
XR_004580366.1 lncRNA upstream 38338 15687082 ~ 15717536 (-) False LOC113533563
XR_003403425.2 lncRNA upstream 38338 15687082 ~ 15713172 (-) False LOC113533563
XR_003403422.2 lncRNA upstream 38338 15687082 ~ 15713172 (-) False LOC113533563
XR_003403424.2 lncRNA upstream 38338 15687082 ~ 15711776 (-) True LOC113533563
XM_026925734.2 mRNA downstream 105175 15463616 ~ 15489260 (-) True onecut3b
XM_026925736.2 mRNA downstream 244929 15338737 ~ 15349506 (-) True LOC113533539
XM_026925696.2 mRNA downstream 261774 15329012 ~ 15332661 (-) True plekhj1
XM_026925177.2 mRNA downstream 287655 15304278 ~ 15306780 (-) True LOC113533213
XM_026925032.2 mRNA downstream 314469 15274921 ~ 15279966 (-) True si:ch211-155e24.3
XM_026925125.2 mRNA upstream 205759 15854503 ~ 15861482 (-) True zgc:85843
XM_026925307.2 mRNA upstream 275477 15924221 ~ 15929067 (-) True polr2ea
XM_026925564.2 mRNA upstream 393084 16041828 ~ 16068561 (-) False LOC113533416
XM_026925563.2 mRNA upstream 393084 16041828 ~ 16068561 (-) True LOC113533416
XM_026925268.2 mRNA upstream 422362 16071106 ~ 16088518 (-) True upf1
TU379938 other downstream 365179 15227472 ~ 15229256 (-) False LOC113533479
TU379789 other downstream 848948 14731912 ~ 14745487 (-) False theg
trnaw-cca_17 other downstream 4045996 11548368 ~ 11548439 (-) True trnaw-cca_17
TU376553 other downstream 5066185 10527282 ~ 10528250 (-) False ccl20a.3
TU375761 other downstream 6621223 8969781 ~ 8973212 (-) False LOC113542985
TU380215 other upstream 38514 15687258 ~ 15717495 (-) False LOC113533563
TU380217 other upstream 38514 15687258 ~ 15724356 (-) False LOC113533563
TU380669 other upstream 708830 16357574 ~ 16367004 (-) True G321462
XR_003403441.1 other upstream 970889 16619633 ~ 16619734 (-) True LOC113533663
trnal-uaa_3 other upstream 1324944 16973688 ~ 16973770 (-) False trnal-uaa_3

Expression Profile