RNA id: XM_034297694.1


Basic Information

Item Value
RNA id XM_034297694.1
length 1911
RNA type mRNA
GC content 0.53
exon number 14
gene id si:dkey-181m9.8
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 2645531 ~ 2655148 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACGTACTACCTAGTACGCTAGTATGGCTGCTTCGCCTTTACAGCTTCCCGGTGACGGAAAAGCAACAGAAAGTCGCTCATTAGCTGTCAACTTGGCGCTATGAGGGAACTTGTGGCTGTAGAGTTTCTGGACAGAACCTGACAGGGGTGTAAACTGCTACACGCAGTTTAGGAAGATACTGAAGTGTCAGAATGACTCGTGTGACTTCTGAGTTGGAGTTTAAAACGCTAGCAGAGTGTAACTACTGCTACCCAGCTGACGTCCTGGCAGAGGTCAGAGAGGTCACATCAGCTTTTCCTGACCTGCACCTCTACGTGGATTATTACTattaCTCCAACAATGACAGGAAGAAGCTGGTGTATTTGCGTGGCACCGTCCCTGTGCTTTACGAAGGTGTGCAGTACAACATCCCGGTGTGCATCTGGCTCCACAATACACACCCCCAGAACCCACCACGCTGCCTCGTCTGCCCGCTACGCAACATGGTGATcaacagcaggagcagcagcgtGGACACTCAGGGTCACGTCCTCCTGCACTGCCTCAGCAACTGGAAGCACGGTTGGTCCAACCTGTCCATCGTCCTGGAGGAGATGGTTGCTGCGTTTCAACGTGAGCCGCCTCTTTTCTCCACTTATCCAAACAGATCTCCAGCGAAACAGCATCCGCTGGTGGAGCAGCTTGATCATCGCAGATCTGATATAAACCCCACGAGTGGGAACTCCATGCACAGGAAGTTCTCCCACCCTGAAATGTCCTCCTCATCTATAGCCCAGTCAGCCAACAGCTCTATGTGTGTGAAGGCGAGTCCGTCTCAGGACGGTGTAGGAGAGCTGAGCAGTGTGAAGAGGTCGTACACACAGGAGCTGATGGATTACGGGATTTCATTCAGAGCGACAAACCTCCAGAAAAACCCAACTAACCCCTTCATCACTGCCCCAAATATGAACGCCTCAGACCCAGATGATATCAGCAACCTGTTTAAAAGCCTTCAGCTGGAAAGAATAGTCAACATGTACCAGCTCGACTACAAAGACAAGGACATTCCGCAGGCGTGGAGGCAGAGTCAGGGGCATGATGAGGGATCTTTGACCCAGCCGAAGTTGCTCGATGACGGACACAGAGTCTTGGTGAGCCACCTACCCGTGGGCGTCTCTCCTCAGAGGATGAAGAACAAACTGACCATTTACTTTCAGAGGAAGCAGAGCGGAGGCGGAGAGGTAGCGGCCATCACGTACCCTTCAGCTCAGCCGGACCAGGCGGTGATCACCTTCAGAAACTACAGAGATGCCGCGCATGTCCTGAAAGAGCCACACAGGATCATCACAGTGGACGAGCATCAAGTTCTCATCCAGCTACAGAGCTTCAATAGCTCACAAGTCCGCGTCCCGGAGGGCATCCAGGGCGAGAAAGCCGAGATGTTCAGCATCATCCTGAGTCAGGAGGGCTGCACTTTCACCCCCGCAGATGTGCTGGAGGCGGTTCAGGCGTGCCGAGACATCCCGTCTGCTCTCAAATACCTCTCTCACGACTGCCCCATCTGCCAGGAGCAGGCGTCCTTCAGTAAGATGATCACCATGACCCACTGCTCGTGTACGTTCTGCGAAAGCTGCTTCAAGGCCTACTTCTCGTCTGTCATCAAAGAGAAGAGCATCGACTACGCGGTGTGTCCGATGTGTAACGAGCCAGACGTGCGCACAGCAGGACGCAGGGAGGAGTCCATGGAGTACTTCAACCTGCTCGACACGCAGATCAGGCACTATCTGGACACACAGACCCATGAGCTGTTTCAGAGGAAGCTGAGGGACCGGGCTCTGCAGGAGATGCCTAACTTCCGCTGGTGTGCTCATTGTTCTTTGAGGATGGACTGCCCCAGCTGCATGAAGACTTCTTCAAAAAAGCTTCTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU370833 lncRNA upstream 522097 2116324 ~ 2123434 (+) True G313052
TU370836 lncRNA upstream 668816 1974099 ~ 1976715 (+) True G313053
TU370796 lncRNA upstream 750584 1894702 ~ 1894947 (+) True G313016
TU370724 lncRNA upstream 1004805 1624563 ~ 1640726 (+) True LOC113543035
TU370723 lncRNA upstream 1008808 1624563 ~ 1636723 (+) False LOC113543035
TU371292 lncRNA downstream 19285 2674433 ~ 2674646 (+) True G313443
XR_004580285.1 lncRNA downstream 76067 2731215 ~ 2736588 (+) True LOC117599939
TU371318 lncRNA downstream 79971 2735119 ~ 2735384 (+) True G313465
TU371354 lncRNA downstream 134094 2789242 ~ 2789496 (+) True G313494
XR_003404407.2 lncRNA downstream 287339 2942487 ~ 2945207 (+) True LOC113543325
XM_026941358.2 mRNA upstream 320051 2319874 ~ 2325480 (+) True dsela
XM_026941102.2 mRNA upstream 326664 2298126 ~ 2318867 (+) False tmx3a
XM_034314711.1 mRNA upstream 326664 2298138 ~ 2318867 (+) False tmx3a
XM_026941100.2 mRNA upstream 326664 2305769 ~ 2318867 (+) True tmx3a
XM_026940816.2 mRNA upstream 370585 2268447 ~ 2274946 (+) True toe1
XM_034314885.1 mRNA downstream 52 2655200 ~ 2661421 (+) False LOC117599997
XM_026940928.2 mRNA downstream 59291 2714439 ~ 2717698 (+) True c21h7orf25
XM_026941137.2 mRNA downstream 63611 2718759 ~ 2728068 (+) True ralab
XM_026941136.2 mRNA downstream 63611 2718759 ~ 2728068 (+) False ralab
XM_026941205.2 mRNA downstream 153279 2808427 ~ 2834932 (+) True plcd1b
trnae-cuc_41 other upstream 151228 2494232 ~ 2494303 (+) True trnae-cuc_41
TU370902 other upstream 459854 2181979 ~ 2185677 (+) True G313112
XR_003404395.2 other upstream 502218 2133214 ~ 2143313 (+) False tgs1
XR_003404390.2 other upstream 668222 1965740 ~ 1977309 (+) True c21h5orf22
TU370328 other upstream 1509511 1131883 ~ 1136020 (+) False paxip1
XR_004580350.1 other downstream 52 2655200 ~ 2662399 (+) True LOC117599997
XR_004580351.1 other downstream 52 2655200 ~ 2662399 (+) False LOC117599997
XR_004580352.1 other downstream 52 2655200 ~ 2661421 (+) False LOC117599997
XR_004580353.1 other downstream 52 2655200 ~ 2660562 (+) False LOC117599997
TU371295 other downstream 20133 2675281 ~ 2675848 (+) True G313445

Expression Profile