Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034297730.1 |
| length | 1021 |
| RNA type | mRNA |
| GC content | 0.53 |
| exon number | 10 |
| gene id | zgc:110269 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047615.1 |
| NCBI id | CM018561.1 |
| chromosome length | 21248730 |
| location | 20469525 ~ 20476964 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006260 | DNA replication | biological_process |
| GO:0006281 | DNA repair | biological_process |
| GO:0005654 | nucleoplasm | cellular_component |
| GO:0005730 | nucleolus | cellular_component |
| GO:0005739 | mitochondrion | cellular_component |
| GO:0004519 | endonuclease activity | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0004527 | exonuclease activity | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU383184 | lncRNA | upstream | 18633 | 20449973 ~ 20450892 (+) | True | G323536 |
| TU383140 | lncRNA | upstream | 20198 | 20434479 ~ 20449327 (+) | True | G323503 |
| TU383166 | lncRNA | upstream | 27155 | 20417572 ~ 20442370 (+) | True | G323524 |
| TU383145 | lncRNA | upstream | 52041 | 20400486 ~ 20417484 (+) | False | G323504 |
| TU383141 | lncRNA | upstream | 64103 | 20380197 ~ 20405422 (+) | True | G323504 |
| XR_004580291.1 | lncRNA | downstream | 8 | 20476972 ~ 20478345 (+) | True | LOC117599946 |
| TU383194 | lncRNA | downstream | 32 | 20476996 ~ 20478345 (+) | False | LOC117599946 |
| TU383195 | lncRNA | downstream | 32 | 20476996 ~ 20478274 (+) | False | LOC117599946 |
| TU383205 | lncRNA | downstream | 51541 | 20528505 ~ 20604192 (+) | True | G323553 |
| TU383236 | lncRNA | downstream | 175269 | 20652233 ~ 20653361 (+) | True | G323574 |
| XM_034314809.1 | mRNA | upstream | 188458 | 20238226 ~ 20281067 (+) | False | clcn2a |
| XM_034314811.1 | mRNA | upstream | 188458 | 20243317 ~ 20281067 (+) | True | clcn2a |
| XM_034314812.1 | mRNA | upstream | 188458 | 20256343 ~ 20281067 (+) | False | clcn2a |
| XM_034314582.1 | mRNA | upstream | 288891 | 20157318 ~ 20180634 (+) | False | cc2d1b |
| XM_034314584.1 | mRNA | upstream | 288891 | 20157979 ~ 20180634 (+) | True | cc2d1b |
| XM_034297731.1 | mRNA | downstream | 28720 | 20505684 ~ 20525922 (+) | True | lifra |
| XM_034297732.1 | mRNA | downstream | 55036 | 20532000 ~ 20572338 (+) | True | spef2 |
| XM_034297733.1 | mRNA | downstream | 95598 | 20572562 ~ 20589458 (+) | True | atr |
| XM_026911357.2 | mRNA | downstream | 115902 | 20592866 ~ 20602531 (+) | True | amer3 |
| XM_034314646.1 | mRNA | downstream | 160620 | 20637584 ~ 20663819 (+) | True | arhgef4 |
| TU383181 | other | upstream | 28964 | 20438702 ~ 20440561 (+) | True | G323534 |
| XR_004580282.1 | other | upstream | 1598165 | 18816009 ~ 18871360 (+) | True | slc44a5a |
| TU381842 | other | upstream | 2046894 | 18415817 ~ 18422631 (+) | False | pex5lb |
| TU381774 | other | upstream | 2242292 | 18226562 ~ 18227233 (+) | False | si:ch211-162e15.3 |
| TU381775 | other | upstream | 2242389 | 18226562 ~ 18227136 (+) | False | si:ch211-162e15.3 |
| XR_004580310.1 | other | downstream | 160620 | 20637584 ~ 20659411 (+) | False | arhgef4 |
| trnap-ugg_22 | other | downstream | 438440 | 20915404 ~ 20915475 (+) | True | trnap-ugg_22 |
| TU383298 | other | downstream | 544225 | 21021189 ~ 21136847 (+) | True | G323615 |
| TU383295 | other | downstream | 658155 | 21135119 ~ 21136847 (+) | False | G323615 |
| trnap-ugg_23 | other | downstream | 665313 | 21142277 ~ 21142348 (+) | True | trnap-ugg_23 |
