RNA id: XM_034297731.1


Basic Information

Item Value
RNA id XM_034297731.1
length 4681
RNA type mRNA
GC content 0.53
exon number 18
gene id lifra
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 20505684 ~ 20525922 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGCGCTATTCGatgaagatgatgaggatgtgcacactgctgctcctgctgctgagCCTCTCTCACACCCAGCCTGCGTCCACTCCGgttcAGAGCTCTCTGAACCCCAGACCGTGTCCGTACAGAAGGACCTGGCGTCTCAGACGCTGACGCTGTTATGGCGGAGCGAAGCCTCACACTTCGACGTGGAGATTTATCACACTGAGCTCATGGAGCTCGTCCTCAACgaGAGCATTTGGGTGGAAGCAGACTCTCAAACAGGGAGTCGTGATTGGTCGTGGCGCTCGGCCGTGCCGCTGGAGTGCACCTCCCACTCCGTACGCATCAGAGCGCGACACGTGGACGCAGTGAGCCAGTGGAGCCCCCTGCTGACCGTCCCTGGGATGGACGTGCCGGACCAGCCCCAGGCTCAGATGTTCCCTCAGGACCGGGTGTTGGAGGTGGGCGGGAACGTGACGGTGTGCTGCATCACTCCGGTGGGCGTGGCCTTTAGCAGTTTGGGATACGGGAACCAGAACTTAGCGGCGTTCAGGCTGAGCCACAGGAGCTTCAGCGGCACCATCACCGACCTGCACAAGTCCTCCTACACCGGCACCAACgtcgtctgtctctctgacaccTCCATCCTCACCGGCACCGTGCTCTTCATCGGCTacccCCCGGGTGATGAGGGTCTGCAGTGTGAGACGCGGGATCTGCAATCAGCCGAGTGTCGCTGGAGCAAAGGACGAGACACAGGCTTAAAGAAACGTGATTTACTCACCAAATACACACTGAAcaacaggagttGTACTGAGGACAGAAGAGACAGGAAGCTGTGTCGCTCTGACCGCTGGGAGAGCAGCTGGACTTTGGTGGCCAAGAATCCTCTGGGAATGGTCCAGCTTTCTGACTCCGCCCTCATCGACCAGCGCATACGTCTGTTGGCGCCGGTGAGCGTGATGTCGGACGCTGAGGCGTGGCAGGCCCGTGTTGGGTGGAGCTGGACGGTGGAGGCCTATAAAACTCTGTCCCTGCTGTGTGAGGTGCAGCTGGACAGCGGAGGACACGCCCACACTCGTAACTACACCGGAGTGGGACTATCCTCCGTGGTGTTGGACAGGCTGAGGCCGGACAGCGAGTACTCGTTCTCTATCCGCTGTGCGTCTGTGCGGTATTTCTGGCGCTGGGGAGACTGGAGCGCCCCCTACAGCCTGCACACACTCATGGACCgACCTAATGCACCAGACATATGGGTGTGGAGGACCAGTGAACACACAGGAAAAGTTGTATGGAagtctgtctcaccCCGGGACAGTCACGGTGCTCTGACAGCGTATGAAGTGtctcagagagacagaggggaaGACGGGTGGACgactgtctctctccctccgaGTGAGTCCAGCACTCCCATCAACCTTAGCCACAGCAGTGATGTCACGGTCGCCGTGGCGGCGCGGAACCCGGTCGGTCTCTCTCAGCGCAGCACTGTGACCGTCCCACAATACACTGCAGACTCTGAGTTGTCTGTGTCTGAGCTGGTGGGGAATGGAGGAGCTTTGACTGTTTCCTGGAACGGCAGTCACAGCTCCACACAAGGCTACGTGGTGCAGTGGGTGCCCACCTGCTGCCCCGCCTCCTCCGCCTGCTCCGTCCAATGGGAGAGAGTTTCATCCTCCAACACCAGCACCGTCATCCAATCAGgatctCTGGACCCTGGAGTGCAGTACACAGTCTCCATTTTCACTTTGCTTCCTGAAGCTTCTGTCCTGCTGCAGAGATATTACGGATATGGACAGGAACAGGttcctTCTCAGTCCGTGGCAGCGCTGTCTGCTGTTCAGTCAGGCTCAGACGTTGTTCTCTCCTGGACTCCTGTTCCTGTGTGTAAGCAAAAAGGCTTCATACTCGGACACACTGTTTACCTGGCCGACGCCTCCAACCTCAGCCTCatagcTAATCTGACCGATCCTGCATTGAGCTTGTACACAGTAAAGAATCTGCCTCTGGGCTCCTACAAGTTCACGGTGAGGTCGTACACTTCAGCTGGAGAGGGAATGGAGTCCACCATCGCCATCAAAACCGAGTCTGACActgatcTGATGTTGGTGGAGATCCTGGTGGCGTTGGGAGCAATGTCCATCtgcctcatcatcatcaccgtcTTCTGCTATAAGAAGAGAGAATGGGTGAAGAAAGCGTTCTATCCTGAGATTCCCGGCCCCAAACTCACCGGGGATTGGTCAGCTCCGccgGGTCCTCTGGACCTGAAGCCCCCCCCACACAGTCTGGTGCACATCGTGGAGAGTCCGGATAAGGAGGGGCTCGTCACGGTCCCGGGCGGACAGGAAGAAGGGCGCCATGACAACGAGGACGATAACCAGAACGTTGAAATGGACACGGACTCGGACGAACCCGCGCTGCTGCGCTACTACAACCAGCTGGTGAGCGACGCCTCCGATTGTTCCACGAGCTCCATGGATTCTGCGCAGACGCAGGTGACCTACACGGGAATCCAAAGCCCCGCCTACCGGCCCCAGAATCAGCCTGAGGCTCTGATGGAGGCGGAGCCCCGGGAGGAGAGCCCCAGCGCGGGCTACAAGCCGCAGTGCTCGTGGAGACCCGATTCTCCGGAGAACGAAAACTTGTGCGACTCGCTGGGAAGCCCGACCTCGGTGACGTCATCACAGTTCCTCATCCCGGAGTCCTCTGAGGAGCATCCGGAGTCGTCGGGAAGCTGGTTCCAAAACCTCCTCTCCGGCAAATTctaattagcattagcatttagcTTTAACAGTCAGACATCACTGCTACTCATTAAAGGCATTATGGGATGGATTTCTCGGATCCTTCTCGATTCGTGTTGGTACTGTCGAGGACGTTTCGCATTAAGGACACTTCAGATTCTCCGCACTAACCCTGCATTCcatttaagaagaagaagctgcCTAAGTAGGGAGCGTGCTAGGACTTGGGGCAGCACGAGATAACGTCTGTCGTATGCAGAAGGCAGCGTAAAGGTCGCCATCTTCCCCTGATGATGGACAGATTTCTGCAGATTTATGAGCTTTGACTTTGACCTCGTGACTCGAAAGGCTTGGTGTCTTTACTGTAAATCATTTTGTTGGAGTTGAAACACTACTGTACTGCAGCGGCTAGTGAGAGACGGTTCAGCTTTAAAGGAGCAGTTCATCCAGAAGTGAAGTGTACGCAATGTTCCTGTCCATCAGCTGGCTAACcagctaacatagctaacagCTTAcggccaccagtttagcatcaggCTAAAGTGTCTCCCTGGCTGCGTTATATATTTGGTtgaactgtaaatatatataaatatataaatatataactatcCGTCCTGTAGAGGGCGCTGTGCTGAACGACGTAGCTGCTTTCCCAagtgttgtgtttgtgaaagTTACCTATCAGGCGTTCTGAAGTCCTCTGATGTTTAATGGACAGGTCACAGGTCACAGGTCACATTAGCTCTGGTATAAGCTCACTGATTTTATGGcattatttgaaaaatgaacaaaaagcaaGCTAAAACAGGAGGGCGGGGCTAACAGAGGAACCAATCAGGTCACAGTACACCTGATTGATTGCCCGTGTAACACTACAGtgctaatttttttatatttttaccgAGTGCTTTGACTTTATTGCCTGAAAGTATTCACAGATtattagctttggctttgctcTGACGCACAACCAGACAGCTAGTGATGTTTGTTTACGCTTTATAAGTTTATCTGCTTCTGAAGAGCTTTTAAGGGCTTAAAGctgttttaagaaatatttctaaaaattgCACATGtctaaaatgcatttaaacGAGCTGTTTAGCAAAATCTGAAATGTCCACCATGTTCTCGTAAATGTAGGCGATTAACTGAGACATGCTCTTCATTTAGCGCTGGAGttacgaggctaatgtagctgaGCATCAGAAGAATCCTTCCCTAGAACCTCGCTAGACCACACCCCACCCTCTAGGCCCAGTTcataagccacgcctcctaGACCCCACCCCTGTACCTCACCTCAAGGCCCCACCCCCTAGAGCCTGTCTTATAGGACACACCTTTTAGGCCCCGCCCCTAGATTTACCCCAAAGCCTCACCCCACTCCTGTCCTGTAGGCCACACCCCTTTAGGTTCCAGCTCCAAAGCCAGACTGTAGcagtagatgtttatttaataatgagtgatatgaataattattataagtgaataaatgtaatgatgTCACTCATTATTTACAGACTAAAATAAACCTCATTAGCAGCATTAGCCTCGTAGTTGCAGTGTAAAGGAGACATGTGCTATCTGATTGATTCGCTTTGTgtgttaaagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgttagcATGGTTAGCTCTCACTACTGAGCAGCTGAGAAATGCTATTAGCACCAACCCATCATCTCATGTGACAGAGCCAGTCTGAGCGTCTGTGTGCTCAGCCAGTGGCGTGTGCTGATAATCGCTCGCACCGCGCCTGAGGTGCGCTTCACTGTAACCTTCACTGAACAGGAGGGTGCCTAGCTAGGGAGCAGGAATGAATCCTGTCCCGTTCAGAAGGCAGCGTAAAGACCGGCGTCTCCTGGGACACGCGTTACTGACCTTTACTTCACTTCATTTTAGAAAGAGTTGAAGAA

Function

GO: NA

KEGG:

id description
K05058 LIFR, CD118; leukemia inhibitory factor receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580291.1 lncRNA upstream 27339 20476972 ~ 20478345 (+) True LOC117599946
TU383194 lncRNA upstream 27339 20476996 ~ 20478345 (+) False LOC117599946
TU383195 lncRNA upstream 27410 20476996 ~ 20478274 (+) False LOC117599946
TU383184 lncRNA upstream 54792 20449973 ~ 20450892 (+) True G323536
TU383140 lncRNA upstream 56357 20434479 ~ 20449327 (+) True G323503
TU383205 lncRNA downstream 2583 20528505 ~ 20604192 (+) True G323553
TU383236 lncRNA downstream 126311 20652233 ~ 20653361 (+) True G323574
TU383238 lncRNA downstream 143763 20669685 ~ 20670160 (+) True G323576
TU383242 lncRNA downstream 145806 20671728 ~ 20672454 (+) True G323577
TU383246 lncRNA downstream 147012 20672934 ~ 20705194 (+) True G323578
XM_034297730.1 mRNA upstream 28720 20469525 ~ 20476964 (+) True zgc:110269
XM_034314809.1 mRNA upstream 224617 20238226 ~ 20281067 (+) False clcn2a
XM_034314811.1 mRNA upstream 224617 20243317 ~ 20281067 (+) True clcn2a
XM_034314812.1 mRNA upstream 224617 20256343 ~ 20281067 (+) False clcn2a
XM_034314581.1 mRNA upstream 325050 20157979 ~ 20180634 (+) False cc2d1b
XM_034297732.1 mRNA downstream 6078 20532000 ~ 20572338 (+) True spef2
XM_034297733.1 mRNA downstream 46640 20572562 ~ 20589458 (+) True atr
XM_026911357.2 mRNA downstream 66944 20592866 ~ 20602531 (+) True amer3
XM_034314646.1 mRNA downstream 111662 20637584 ~ 20663819 (+) True arhgef4
XM_034314645.1 mRNA downstream 111662 20637584 ~ 20662857 (+) False arhgef4
TU383181 other upstream 65123 20438702 ~ 20440561 (+) True G323534
XR_004580282.1 other upstream 1634324 18816009 ~ 18871360 (+) True slc44a5a
TU381842 other upstream 2083053 18415817 ~ 18422631 (+) False pex5lb
TU381774 other upstream 2278451 18226562 ~ 18227233 (+) False si:ch211-162e15.3
XR_004580310.1 other downstream 111662 20637584 ~ 20659411 (+) False arhgef4
trnap-ugg_22 other downstream 389482 20915404 ~ 20915475 (+) True trnap-ugg_22
TU383298 other downstream 495267 21021189 ~ 21136847 (+) True G323615
TU383295 other downstream 609197 21135119 ~ 21136847 (+) False G323615
trnap-ugg_23 other downstream 616355 21142277 ~ 21142348 (+) True trnap-ugg_23

Expression Profile