RNA id: XM_034297733.1


Basic Information

Item Value
RNA id XM_034297733.1
length 4066
RNA type mRNA
GC content 0.50
exon number 23
gene id atr
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 20572562 ~ 20589458 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGAAAAATgtgcGTCATGATCTCGCCAGTAAGGTCTTTACCTGCTGCAGCTTCATCATCAAGCACGACTACCGAGTGACGCTGTACCTGCTGCCCCACATCCTGCTGTACGTCCTGCTGAGCTCCACACCTGAGGAACAGCAGGAGgtggtgGATGAGATCATGGCTGTGCTGAAGGAGGACGATCCGCGTCTGTCTCAGCTGCAGGAGAACGCCTCGAGTCTGGCTCAGCTCAGCACTCAGACCGTCTTCTCCATGTTGGACCACCTGACCCAGTGGGGGCGCTACAGACTCCAAACACTCAGCACGGCCAAGAGCACCGGCCGCCAGAACCGAGACACACAGAACCTACACGCCAACGgtgaaGAGAACAGTGAGTATCAGTGTGTGGTCTCCTTCCTGAACCGGATTCCTCAGGATGTTCTCGCTAAAGCGTCGTTCCGTTCTAAAGCGTACACACGCGCTGTCATGCACTTCGAGGCCTTCATCAGGGAGAAACAGCAGAACATTGAGGATCACCTGAGCTTCCTGCAGGTACGACAGAAGATGTACGCAGCCATGCATGAGCCGGACGGTGTGAGAGGAGTGAACGctctgagaaaagaggaaactTCACTGAGAGAACAGATTCTAGAACACGAGAGCATCGGCCTGCTGAGAGAGTCTACAGCCTGCTACGACAGAGCCATGCAGCTAGAACCtgaccagattgTGCATTATCATGGTGTGATGAGCTCCATGCTGGGACTCGGTCAGCTCTCCACAGTGATGACTCAGGTTAATGGAGTTCTGGCGAACAGGCCGCAGTGGAAGTCGGATCTGAACGCGTATCGCGTCGAGGCGGCGTGGAAGCTCTCAAAGTGGGATTTACTCGAGGATTATTTGGCCTCTGatgagaaATCGAACACGTGGGGTGTGAGACTGGGACAGATGCTGCTCTCGGCTAAGAAACAGGACTCGGGGTGTTTTTATGAGAAGCTGAAGTTGGCGAGGAGGGAGCAGGTGGTTCCGCTTTCAGCCGCCAGCTTCGAGTGTGGAACCTACCAACGAGGATACGAATACATCATCAGacttcACATGCTCAGTGAGTTAGAACATGCGTTCACTGAGCTGCAGAAGGAAAGTGAAGGGTCCAAAGCGAGTGAGCTGATGCTGAACTGGGACGATCGTCTGCTCATGACCCAGAATTCCTTCAGAGCCAAGGAGCCGATCCTGGCTCTCCGTCGGGCCCTGCTCAGCCTCAGCAAGgggtgtgtgtgtgaggagcagGTGGGTCAGTGCTGGCTGCAGAGCGCGAGAGTGGCCCGTCGAGCCGGTCATCACCAGACGGCCTTTAACGCCCTGCTGAACGCTGAGAACTCTCGCCTGTCTGAGCTGTTCGTGGAGAAAGCCAAGTGGCTCTGGTCCAAGggtgatGTGCATCAGGCTCTCATTGTGCTACAGAAGGGAGTAAAACAGTGTTTTCCTGAAGACCAGCATCTCTCAGATCCTAAGAGGATCCAGATTAAAGGGAAAGCTCTGCTGCTGGTGGGCCGCTACATGGAGGAGACGGCAAACTCAGAGAGCAACGCCATCATGAAGATCTACAGGgatgtcACTACACTGTTACCCGAGTGGGAAGACGGGAATTTTTACTTGGCCAAGTATTACGACAAACTGATGCCGATGGTGACGGACAATAAGATGGAGAAGCAGGGCAACGTCATCCGCTACATCGTCACTTATTTTGGAAAAGCGCTGCAGTTTGGGAATCAGTACATTTACCAGGCGATGCCTCGAATGCTCACGCTGTGGCTCGATTTTGGCGCAAAAGTCTATGAAGTGGAAAAAGggGGCCGTTCGGATCGAGCTCAGATGAAGGCGGATTTGAGTAAAATAAACGCGGTGATCAGCGAGCACACGCTGCATCTCTCTCCGTATCAGTTCCTCACTGCGTTCTCGCAGCTCATCTCTCGAATCTGTCACTCCAATGACGAGGTGTTCGCCGTGCTCATGGACATCATCGCGAAAGTTTTCCTCGCTTATCCGCAGCAGGCCATGTGGATGATGACCGCCGTGTCGAAGTCGTCTTATCCAACTCGGATGAACAGATGTAAGGAGATTTTGAACAAAGCCGTCAGTCTGAACGGTTCGTTTGGGAAATTTATCGGAGATGCAAACAGACTGACGGACAAACTGGTGGAGCTCTGCAACAAACCGgtggatGGGAACAGCTCCACTCTCAGTATGAGTGTGCACTTTAAGATGTTGAAGCGTTTGGTGGAAGAGTCAAGTTTCAGTGAGATCCTCATCCCGCTGCAGTCGGTGCTCATCCCCACGCTGCCCTCCACCGGCGGCGCCAACGCCAGCCACGACGCCTTCCCCGGACACTGGGTCTACTTATCCGGATTCGACGACACCGTGGAAATTTTGGCGTCGCTCCAGAAACCGAAGAAAATCTCCCTCAAGGGCTCGGATGGAAAATGTTACACGATGATGTGCAAACCTAAAGATGACCTGAGGAAAGACTGCAGGCTGATGGAGTTCAACTGCctcattaataaaTGCCTGAGGAAAGACGCGGAGTCCAGACGGAGGGATTTACACATTCGGACGTATGCTGTGATTCCGTTAAACGAAGAGTGCGGCATCATTGAGTGGGTGAACAACACGGCCGGCCTTCGCCACATCCTCACCAAACTGTACAAGGAGAAAGGGGTCTATTTGACGGGGAAGGAGCTGCGGAAAATGATTTTGCCCAAAACGGCGTCATTTCAGGAGAAACTGAAGCTGCACAAGGACGTTCTGTGCGCTCGACACCCTCCTGTGTTTCACGAGTGGTTCCTCAGAACGTTCCCCGACCCGACCTCCTGGTACAACAGCAGGTCTGCATATTGCCGCTCCACAGCTGTCATGTCCATGGTGGGCTACATCCTGGGTCTGGGAGATCGTCACGGAGAAAACATCCTGTTTGACTCCCAAACCGGAGAGTGTGTTCACGTCGACTTCAACTGCCTCTtcaacaagGGCGAGACTTTCGACGTTCCCGAGGTCGTCCCGTTCCGGCTGACGCAGAACATGGTGCACGCCATGGGCCCGATGGGGACCGAGGGGCTTTTCAGACAAGCCTGTGAGGTCACACTGAGACTCATGAGGGACCAGAGAGAACCGCTCATGagCGTGTTGAAGACGTTCCTCCACGACCCTTTAGTGGAGTGGAGTAAACCCGCGAAGGGCCCTTCAAAAACACAAGCCAACGAATCCGGAGAAATCGTCAACGAGAAGGCTAAAACCCACGTGCTGGACATCGATCAGCGTCTCCAGGGTGTGATAAAGAACAGGAATAAAGTGATGGGACTGCCGCTGTCCATCGAGGGACACGTTCACTACCTCATTCAGGAGGCCACGGACGATAACCTGCTGTGTCTCATGTACCTGGGCTGGGGCCCGTACCTCTGATCCAACGTTCAGTTTCccaaacacactgtttatttcctttttgaTCATCTTGCTGCACTTCACTTCCTTGTTTTGGGCATTTTTTTAGTCTGATAAACTAAAAATGTcaactttatttcttttaataagaaaaatctAATTATCTATCTTTCAGTGTACTCCATTTTTTTCGTTTCGCTTTCTAACACCGCTGAGCAGCTTAATAAAGGCGATTTCGATACTTGTCTTTACGATATTAtcgtaatatttattaatataattataaattcttacgatgtttttttttttttcacagcacaTGTGACGCTCCCTCAAATGTGACCTGCCTTAACCACCTACATGTTTTATACAACTCCATGCTAGTActgtaaactgataaaaatcATTTCTCACATGATTAGTCACAAGACCAGTCACAAGTTTGCAAAATATGTCTCAATTATTGAGGctttaaatcttaaatctataaaaatgtaGAGTTAAGAGTGTTCCTGTTGTAACGTCTTGGTTTAAAGCTAcgtgtgtgatgtcagtgatgacatcatgaaGACAGTGTTCTATCTATGCAGTATCTatctaaaaaatgtaaaaattatattaaataataaagctgATGTTTAACAGTTTG

Function

GO: NA

KEGG:

id description
K06640 ATR; serine/threonine-protein kinase ATR

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580291.1 lncRNA upstream 94217 20476972 ~ 20478345 (+) True LOC117599946
TU383194 lncRNA upstream 94217 20476996 ~ 20478345 (+) False LOC117599946
TU383195 lncRNA upstream 94288 20476996 ~ 20478274 (+) False LOC117599946
TU383184 lncRNA upstream 121670 20449973 ~ 20450892 (+) True G323536
TU383140 lncRNA upstream 123235 20434479 ~ 20449327 (+) True G323503
TU383236 lncRNA downstream 62775 20652233 ~ 20653361 (+) True G323574
TU383238 lncRNA downstream 80227 20669685 ~ 20670160 (+) True G323576
TU383242 lncRNA downstream 82270 20671728 ~ 20672454 (+) True G323577
TU383246 lncRNA downstream 83476 20672934 ~ 20705194 (+) True G323578
TU383279 lncRNA downstream 343774 20933232 ~ 20946079 (+) True G323603
XM_034297732.1 mRNA upstream 224 20532000 ~ 20572338 (+) True spef2
XM_034297731.1 mRNA upstream 46640 20505684 ~ 20525922 (+) True lifra
XM_034297730.1 mRNA upstream 95598 20469525 ~ 20476964 (+) True zgc:110269
XM_034314809.1 mRNA upstream 291495 20238226 ~ 20281067 (+) False clcn2a
XM_026911357.2 mRNA downstream 3408 20592866 ~ 20602531 (+) True amer3
XM_034314646.1 mRNA downstream 48126 20637584 ~ 20663819 (+) True arhgef4
XM_034314645.1 mRNA downstream 48126 20637584 ~ 20662857 (+) False arhgef4
XM_034314647.1 mRNA downstream 54614 20644072 ~ 20662857 (+) False arhgef4
XM_034297735.1 mRNA downstream 218169 20807627 ~ 20883606 (+) True col11a1b
TU383181 other upstream 132001 20438702 ~ 20440561 (+) True G323534
XR_004580282.1 other upstream 1701202 18816009 ~ 18871360 (+) True slc44a5a
TU381842 other upstream 2149931 18415817 ~ 18422631 (+) False pex5lb
TU381774 other upstream 2345329 18226562 ~ 18227233 (+) False si:ch211-162e15.3
XR_004580310.1 other downstream 48126 20637584 ~ 20659411 (+) False arhgef4
trnap-ugg_22 other downstream 325946 20915404 ~ 20915475 (+) True trnap-ugg_22
TU383298 other downstream 431731 21021189 ~ 21136847 (+) True G323615
TU383295 other downstream 545661 21135119 ~ 21136847 (+) False G323615
trnap-ugg_23 other downstream 552819 21142277 ~ 21142348 (+) True trnap-ugg_23

Expression Profile