RNA id: XM_034297744.1


Basic Information

Item Value
RNA id XM_034297744.1
length 3133
RNA type mRNA
GC content 0.49
exon number 14
gene id fndc7a
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 9829378 ~ 9861148 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTATGCCCCATGCACCTCCACCTGTGCGTAGGCTGTATGAATTGAGCTCAGTGTACATTTCCCCGAGTGTCAGAGGGAAGCAGGACACAATGTCGATAGAACCTGCACAGTAAGGAGGAGCTAAAGACATTATAGTGTGTACCCTCACAACTAGTAGGACAAACACCAGTAAGCGTCAACGTGCCCCAAGACAGCGAGCAGATTGCTTAGAATCGAAGATATGGGATCGGAAGATTTGCGTTTATTAACAATAATCTTAATGATCATGTGCACATCGAAGATGTGTGCGGGGCAAAACGaCATAACTGTGTCCGTTTTCACCGTCACGTCTAAAAGTATGACGGTTCTCTGGAGCGGACAGTCTGACGCGAGCTCCTTCAATGTGACCGCCACACCGAAAAACTCGCGTGAGCAGCCCGTGTTCACGCAGTTCAGCAGCAGCACGGTAATGGGCTCCGTGAACTCACTCTCCCCGAACACGGTGTACACGATGCGTGTGGAGTCTATGAACAGCTCCGTGAACGTACTCAGCAGCGCCGAGACCGAGGAGACAACGGCACCCGAGGTTCCTTCCATTGTGCAGGCCTACTCCAAACACAGCGACAGCATCACAGTGGAATTTCGCGAGGTGTCAGGTGCCACGGCATACATCCTGCGGGCAGAGAACAATGACGGATTCTTTTCAGAGAGTGTGGTGTATAGCTCGCCAGGTACCATACTCAACCTGAGGGCCTACACCAATTATACACTTAGTGTCATGTCAAGGAACAGTGGTGGCCGTAGCCAGCCCTCATGCCCAGTCTATGCCAGGACAGTGGTTGTAGCCCCAGCACTGCGCTCTGTGTCACCCACTGAGGACAGTATTGTGGTGAGCTGGGATCCCGTGGAACATGCAGTTCAGTATACACTGTGTGTCATCATGGAGGAATCAGATGCCCTGTTCAAGGTCAATACCTCCCAGACCAACATGACATTCAGCAGTCTAGATCCAGGGGTCACTTACTGCATCAAAGCCACAGCCTGGGACCCCAATAGCATCCCTGGAGATGACATTACCATCTATCAGATCACCCGTCCCCCTGTTCCTGCAGGTGTGCAGGTTTCACTGACCCTGGAGAGAATCATGGGACTAGCTGTATATTGGGAGGCTGTGCGTGGTGCAAGTCTCTACTTTGCCCTGAGCTCTATGGGGCAGAACTGTACCTCCATGGGAGACCCGTTCTGCATCATCAGCCCTATAGGATGCAGTGAGAACCACACACTCACCGTCATGGCTGAGAACCAAGCTGGCCCCAGCAGCCCATCCCAGCCAAAGGACCTGCTCACCTTCCCATGCCCTCCAGTCTCAGTGGAGGTAGATGAGCCCTCTGTAGGGAACTGCTCCGTGACATGGACCAGGGTTCCATGGGTGGAGTACTACATGGTGTACATAAACAGAGATGATGGAGCAGAGGAGCAGtgcaacaccaccaacaccatctgCTATTTCCACTGCGACTGTGGCTACACCTACATGACTACTGTATTTGTCTACAATGTGGCTGGTGCCAGCCCTCCAGGACCAATTCTCAACTACACCACTGTCCCCTGCTGTCCACAGAATGTTTATGTCTCTCTTGTTTCGACGGAGACACTGGAGGTCACATGGCCAGCAGTGCGTGGAGCAGATCTGTATGAGACTGTGGCGGCAGATGGATcagacacactgcactgcactgacACCGTGCCCATATGTGCCCTGTCTGACCTTACCTGCAACAGCCTGTACAGTGTTGTAATCAGACCCTGCGGTGAGATACGTGGCTGCAACAATACCTGCACAccaaaaacacaggaaacagccCCATGTGCTCCTGAGATCCTGAACCTCACCCAGGTGAGCAGATCTGCTGTGCAGGTATCATGGAGGGCTACCAACAAACAAGCCAACTACACAGTGAATGCTTTTGGCAGTGCCAGCACCCTTACTTGCTCATCCACCAATACTTCTTGTGGTATCACCAACCTACCTTGCGGGGATACTTATGAGGTCAGCGTATACGCCACCACCACTGTGGGGCATAGTTTGCCCAGCTATAGCATCACTATGGAAACAGGACCCTGCTGTCCCGAGACTCTCAGTGTGGAACAGGTGACACAGTCCATGACCAGTGTGAAGTGGTCATCCTCCAAGGGAGGCTGGTCTTATGTCACCTCGCTGTCATCATCACGAGGTCATGCAAAGTGCCATACCATGGACACACACTGCTTAATGGGATGCATCACATGTGGCACCAACTACAACGTCTCAGTGGAGGCCATGAGCATTACGGGACACCAGTCCTTATGCAACTATCACGGCTTTTCTTCCAGCACTTGTTGTCCTTCTGGTGTGAGGCTGTACCGAATGGTCAATAACACACTTCGTGTGTCCTGGAGAGGTTCAGATAGTGTCAATGGGTACTCAGCTGAACTTTCCAGCAACAGCGCCAACTACACATGCAGGCCAGTGCTGGGTGTCAGCTCATGTGACATAGACAGTGTACTGTGTGGTGACACCTACAGTGTGGTGGTTGCACCACTCACACTCCAAGGTTCCAAAGTCTTATTCTGCCCCAGGAGACTATACTCTGTTTCCTGTGTTGGCAACAGTGTTGGAATGGTTATTTATCGTGGAAAAAGGAGTGTGGATTAGCAGCTTCCATTTTAAGGGTCTCTCTGTCAATTGAGAgGCCattgagaaaatgagaaaaggagaagaaaaactTTAAAGAGTAGGaatatatacttatattatACATAGTTTcctttatactgtataccaaGGATTAATGGAATAGATtatcaaatgttaaaaattatataatttgccaTTACCCTCTTTGTGTTGGCATACCATATTtagataaatgtatttataaagtgGCAGGCAATTTAGCAGTGAACTATACTATGAATGTCTGTTCATAATTACTGTTATTGTATCTGgataaaatatttgaaagaaaatatttgaactccaccaaaatataaatctttaaaacaaGTATAAATGTGTCTCGGATGTGGGTTATATGTGGGTGACAGTAAGTTCTGAGACATGAATGTGATTTTGATTATGTACAAGATAGTTTATATATGTTGATGGCTTAC

Function

GO: NA

KEGG:

id description
K24487 FNDC7; fibronectin type III domain-containing protein 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU376060 lncRNA upstream 9915 9819266 ~ 9819465 (+) True G317529
TU376057 lncRNA upstream 13723 9815277 ~ 9815657 (+) True G317526
TU376054 lncRNA upstream 18373 9810800 ~ 9811007 (+) True G317523
TU376052 lncRNA upstream 20209 9808847 ~ 9809171 (+) True G317521
XR_004580302.1 lncRNA upstream 117480 9705920 ~ 9711900 (+) True LOC117599959
TU376155 lncRNA downstream 13849 9874996 ~ 9875820 (+) True G317618
TU376158 lncRNA downstream 17768 9878915 ~ 9879756 (+) True G317621
TU376171 lncRNA downstream 78822 9939969 ~ 9940237 (+) True G317633
TU376260 lncRNA downstream 244619 10105766 ~ 10106921 (+) True G317703
TU376326 lncRNA downstream 296130 10157277 ~ 10157530 (+) True G317754
XM_034314568.1 mRNA upstream 1492 9788997 ~ 9827888 (+) False LOC113533145
XM_026925101.2 mRNA downstream 82606 9943753 ~ 9952320 (+) True dnaaf6
XM_026925733.2 mRNA downstream 97846 9958993 ~ 9977916 (+) True pip4p1a
XM_026925090.2 mRNA downstream 120039 9981186 ~ 9989044 (+) True LOC113533165
XM_026925529.2 mRNA downstream 142509 10003656 ~ 10034015 (+) True lig1
XM_026925570.2 mRNA downstream 181741 10042888 ~ 10053540 (+) True mpz
TU375892 other upstream 414216 9412323 ~ 9415164 (+) True G317390
TU375607 other upstream 1016560 8811957 ~ 8812820 (+) False LOC117599964
TU375135 other upstream 1560182 8268709 ~ 8269198 (+) True G316745
TU375134 other upstream 1565319 8263339 ~ 8264061 (+) True G316744
TU374748 other upstream 2133461 7695534 ~ 7695919 (+) True G316413
TU376185 other downstream 98182 9959329 ~ 9977901 (+) False pip4p1a
trnar-ucu_12 other downstream 326604 10187751 ~ 10187824 (+) True trnar-ucu_12
XR_004580322.1 other downstream 675284 10536431 ~ 10562994 (+) False capn10
XR_004580323.1 other downstream 675284 10536431 ~ 10562614 (+) False capn10
TU376560 other downstream 702688 10563835 ~ 10568896 (+) False eif4e2

Expression Profile