RNA id: XM_034297758.1


Basic Information

Item Value
RNA id XM_034297758.1
length 8652
RNA type mRNA
GC content 0.53
exon number 38
gene id dop1a
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 239278 ~ 272041 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTGCTCGTGGAAGCGCCTCGATTTTCTATAAACAGCTTTTCCTACAGCAGGATCGATATCGGCGCGGAGCTGCACCCCGATGCGCGGTTTAGAGGCGAGAGGCTTTAACGGAGGCGGACATGCGGCTGTTAATGTCGGTGTTAATGAGAAGAGTGTAAAAGCGCGCTGTGTTTCTCGGCTTCCGGTCAGCAATGTTGCTGAAATCAGTGAAGAGGAAATGAGCGCTTTATAACCGACCCGCAGCGCGGACTGGGATCCACTGGGATCTACTGGGATCCACTCTGATCCACTCTACTGCTTATTCTCTTTATGCCACAtgtgttatagtgtgttatagtgtgttagGATGAACACAGAGGAAGTGGAGCTGCTCAGTGACTCTAAATACAGGAACTACGTGGCGGCGGTGGATAAAGCACTGAAGAACTTTGAGTACTCCAGCGAATGGGCCGATCTCATCTCAGCTCTCGGAAAACTCAACAAGgtACTGCAGAACAATGCCAAGTACCAGGTCGTGCCCAAGAAGCTGACGATTGGGAAGCGTTTGGCTCAGTGTCTTCACCCGGCGCTGCCCAGCGGAGTTCACCGCAAAGCGCTAGAGACGTACGAGATCATCTTCAAGATCATCGGACCCAAACGCCTCGCCAAGGACCTGTTCCTGTACAGCTCTGGACTTTTCCCCCTGCTGTCTAACGCCTCCATGTCGGTGAAGCCCGTGCTGTTGGGTCTGTACGAGACGTTTTATCTGCCTCTGGGGAAAACGCTGAAGCCGGGACTGCAGGGACTCCTGACTGGTGTACTGCCCGGCCTCGAGGAGGGCTCCGACTACCACGACAGGACAAATGCGCTGTTGGAGAAGGTGGCGTCGGCTGTGGAGCAGTCGGTGTTCTATAGCGCCCTCTGGGGGAGCATCCTGACCAGCGCACCAGTGAGACTGCCGGCCATCAGCTTCGTCCTCCTGCACCTCAACCGCAAACTGTCCATGGAGGATCAGCTGTACATCATCGGCAGCGACATCGAGCTCATGgtggagGCGGTCAGTACGTCTGTTCAGGACTCCAGTGTGTTGGTTCAGAGGAGTACACTCGATCTCATCCTCTTCTGCTTCCCCTTCCACATGAGTCAGGCCACGCGTCCTGATATGATCCGGATCCTCTCTGCAGCGCTGCACGTCGTCCTGAGGAGAGACATGTCACTGAACCGCCGACTGTACGCATGGCTACTGGgttcTGACAATAACGGTGTGAAAACAGGTCCTCGGAACAGCCGCCTGAGTAACCCAGAGGAACACGCAACACACTACTTCAACACCTACTCTAAAGACCTGCTGGTGCAGgccaTGGTTGGGATTCTGCAGGGAAAAGCTCGAGGTGGTGAGGAGGAGAGCGCGCTGATGCACGACCTGAAACCTTTCCGCATCCTCATCAGTCTGCTGGACAAACCTGAGctggGTCCCGCCATCCTGGAGGACGTTCTGATCGAAGTGTTCAGGACTTTACACACCCAGTGCCGAGCCGAACTGGACCTGCAGAACCAGAACCCCTTCAGCAAAGACCACACGCAACTCAGCAGTAAACTCAGAGAGAATAAGCGGACGGCGGAGCTGATTAAAACCGCAAACCTCTTATTCAACTCCTTTGAGCCGTACTACATGTGGGATTACATCGCTCGCTGGTTCGAGGACAGCTGCAGACGAACTCAGAGTGGATCGGCCGCTTCGCTCCTGTCGCTGTTTGAGTTCTGTCAGCTCGTCGACTTCCTGTTGGACATCGTGTCTCTGCCCACTAGAAGTATGCGAGTGATCTGCCAGGAGACGTATATAGAGATCCAGACAGAACACTTGCCCCAGTTGTTGTTGAGGATGGTGTCGGCCATCACTCTGCAGCTCGGTGCTCTCAGTCTGTCGGAGCTCACACACTGTCTGCGCCTCTGCTCCAAAATCCTCAGCAAAGTCCAGCCACCACTCGTCTCCCCACTCATCCTCCCATCCAGCAGCTCCGCCCGAGAGCAGGACACACGCCAGGCTGCCCCGTCGTCTCTGGATGTCCCGGTGAGTGAGGATGTGTTTGAGGACAGGGAAGGTCCCTCGGTCGTTCGTTCTCCtgagagcagctttacagatttTGTTCAGTATGAGGAGGCGGAGTCTGATGACCACGCCCCTCTCCGGTCCAATCCCACACTCCAGCCCGGTTCTGCTGCAGCCTCTAAAGCTCAGGGTGCTCCAGTGATGCAGCGCTGCCTCGAGCACTTCCAGCACTTCCTGTGCAGACTGGTGGAGCTCTACATCGCACCGGGTCACACGGGGGGCGGGGCTAACCAGGGGGAGGCGGAGTTAAcagagagtctgtgtgtgtttgatcagaaggagtgtgtgtctgcgttCACGGCTGCGTGTCAGCTCTTCCTGGAGTGTTCCAGTTTCCCCGTGTACGTCGCCGAGGGAAACCTCAAATCTCCCACCAGAGACGAGCACGAAGacAGCGGCGGTGTGACTCCGCCTCCTCAGTGGCTCCAGGCTCTGATGAACGCCTGTTTCTCTGAGCTGGACTTCAGCGTCCGCGCCGTCGCCGTCTCCCTCCTCATGGACCTGGTGGGTCTGACTCAGTCCGTTGCCATGGTGACAGCAGAACGGGTGGGCGTGGCCGACTCCTCCCAGCCGATGAGCCCGAGCCAGGGCCGTGTTGCCGTGGTGATCAGGCCGCCGCTCACGCAGGGGATGTTAAAGCACATCGCCGACAACACCGACTTTTTCAAGAGCGTGGCGGTGTTGTTGTGGGATCAGTTGGGTGAAGCAACTCCTCAGCATCATCAGCGCAGTGTGGAACTTTTCTATCAGCTACACAACCTCGTTCCCTCCTCCAGCATCTGTGAGGACGTCATCAGCAACCAGCTCATGCATCGAGACAAAagGATCCGTTTGGAGGCTCATGTGAAATTCTCAGTCTTGTGGCATCTAACACGAGACCTGAACATCACCAAGTCTTCACCTTTCAGCCGCACCTTTGACAGGTCTCTCTTCATCATGTTGGACAGTCTGAGTTTCTGGGACGGTTCGGTGAGTGCTGTGGGGCGGGCGTGGCTCAATCAAGTTCTCCAGAGACACGACATCGCCCGAGTTCTTGAGCCgcttcttctgctgctgctgcatccaAAAACACACCGTGTGTCCATCCAGCGTGTGCAGGCTCAGCGCCACTGGACCTGGGCCTTTCCCGAAGCTCCAGCACCAGAACCGGGATCAGAGCCACATGAAGTTGGATGCTTGGAGGACGCAGGCTGCTCTGACCATTACTGTATGTCTCAGGATAACCTGAAGGGCCAAGTCCTTCCTCTGGATGATATGGAGCCCTTCAGCCTAACGGTGAACCCTTTAAGTGACAGTCTGTCACTTCTGAGCCTCAGCATCGAAAACGTACATCTTTGTGCTGAATATCAACCTCCGGACCAGCAGGGGGAGCCGCCGAGCTCAGAGTCAACTGGCTCCCAGTTCTCCACTGTGGACAACGGCAGCTTGAGTGAGCTGGAAGGAAGTGGTAGTACTGTTAACACGTGTGATCAGGCAACACTAGAGGCAGAATTAGAGGAAGAGTCCATAAACATGGCCGTTTCTGTGATTCTTGCTGAACTAGTGGACAGGGTGGTGCAAATGGTGGAAGACAGTTCAGTTGAGACACCTTCACCTCCAGAAGGTTGGTCTCGAACTGACTCGGACAGTTCCAACACCTCAGAAGCATCTACTGAACCCCAGGTCAACATGGGCCCGTTTCCTGGCAACCAGTTTCGAACACTTCCTGAATTGGTGGCTGGTGGCACGCTGGAATTTCTCACAGTTCCTTCATCAGGTGATGAACCTCATGAAGGAATAACAAGACACAGTTCCTCACCTTCCATCGTCACGCTTCCAGATAGCAGTGGAAACGGTACTCCAGAGTTAAGCTTGCACCCAGATGACCCTCGGTCCCGAAAACGCAGCCACAGCAGTACTCAGCTTAGCCTCAAGGGTAAAATCATGGAGCGTCTCACTGACAAATCTCCTGGAGCCAAGCCCAAggtgaagaaaaacaagaagaaagaggaggaacGTCGAAAGTCAAACCAGGCAGATAAGAATCGTCCCCCCAGCATCTTCTTTGGCGACAGCTTGGACTTGGAGAATTGGTACAGCTGCGGTGAAGGTGAGGTTTCTGAGATTGAGAGTGATATCGGATCTCCTAGTGGCGGCGCCGGTGGAGTCCCGGGCTCGTCCCGATCTTCTACATGTCCTAGTCGCTTTAACATCCACCCCCTTTACCAGCACATCTTGCTGTACCTGCAAATCTACGATTCCTCTCGGGCTCTTCATGCTCTTTCTGCCATAGCTGCCATGTTGCGCACGGCTCCTGCTGGCTTTGTCAGCGCCATCTCAACCACCAGCATTAACAACACCTACACACCTCAGCTCTCGCTTCTTCAGAACCTTCTAGCCCGTCATCGCGTTTCCGTCATGGGAAAAGATTTTTATTGCCCCATTCCGCAGGATTCGCATTCACATTCCTTCCGTAGCGCCATGTACCTGGAGATCATCATCTCGCTGTGCCTCTACTTCTTGAGGAGCTATTATTCATCACATGTTCCAGCGGCACCGCAGGACCTGGCGGGGAACCGCGCCATGCAGCTGACCAGCGTTGAAGTCTTGACGCTGCTCTTCAGCGAGCTTGCCAAGGTGACTGGCGGCTCAGCTAAAGGGTTCGCCAGCTTCATCAGCGACGTCCTGTCCAAGTGCAAGGTACAGAAAGTGGCACTGCACTGCCTGCTCTCGTCCATCTTTAGCGCTCAGAAGTGGCACGAGCAGCGCATGCGTGGAACCAACCTGCCTGCCGTCGAGGAGGGACTATCCGAGGACAGCGTCATCAACTTGTCCGAGGAACAGCTGGACGGATGCAGTGGCGTACAGTCGCAACTCCTTCGCCTCCTTCAGAGCCTCGTTGTACTCGAGCATCACGTCCTGGTCCCTGGAGACGAAAGTGGAGAGGCTGGACCAGGAACAGGGAATTCAGGAAGTGCTGGTGGAGCCGTGGCTGGTTGTGGTGGTTTTGAGATTCTGGGTGGAGAAGTGGAACACGTGAATCCTCAACAGCCAATGGCATCACTGCAGTACCTGCACGGGCAGCCAATTACAGCGCAGGGTATGTTTTTATGTGCGGTGATACGGGCGCTTCACCAGCACCACGCGTGTAAGATGCACCCGCAGTGGATCGGCCTCGTCACGGCCACGCTGCCCTACATGGGTCGGGTTCTGCGTCGCGTGGTGGCTTCAGTGACACTGCAGCTCTGCAGGAACCTGGACAACTTGATCCAGCAGTACCGCTATGAGACCGGAATCACAGACACCAGgcCCCAGTGGATGGCGCTGTGTATTCCTCCTGATCTGATCCTCACAGTGCTGGAGGGAGTCACAGCCATCATTCATTACTGCCTGCTCGACCCGTCGTCTCAGTACCACCAGCTCCAGGTGAGTGTGGATCAGAAGCACCTAGCTGAGGCGCGCTCAGGTATCCTGTCGATCCTCCACACCATCATGTCCTCAGTCACACTGCTCTGGAGTGCACTTTACCTGGCTGACAGCTCAGAACGTCCCAGCGGCGCCACCTGCAGCTCCAACATCAACCTGGGGTCCACTAagAATCTTCGTCAGCAGATCCTCGAGCTGCTCGGCCCGATCTCGATGAACCACGGAGCTCACTTCATGGCCGCCATCGCTTACGTCTGGAACGAACGAAAACAGACCAAAACTCCTGCCAGGAACAAGGTAATTCCGACCGCGAGTGATGAACAGCTCCTCCTGGTGGATTTGGTGAGGAGTGTTAACGCCATGCGCACTGAAACCGTCATGCAGACAGTGAAGGAGGTTCTCAAACAGCCGCCAGCCATCGCTAAGGAGAAGaaacatctctctcttgaagtctGTATGCTTCAGTTTTTTTACGCTTATGTTCAGAGGATTCCAGTGTGCAGTTTAGTCGACAGTTGGCCTTCACTGCTCTCACTGCTGAAAGACTCGGTGCAGCTCGGTCTTCCTGCTCCGGGACAGTTCCTCATCCtcggAGTTTTGAATGAATTTATCCTAAAAAATCCGACTCTGGAGAGTAAGAAGGACCAGCGCGAGCTGCAGGACGTGACCCATAAGATCGTGGAGGCCATCGGGACGATCGCAGGTTCCTCTCTGGAACAAACGACGTGGTTGAGAAGGAACCTGGAGGTGAAACCGTCTCCTCAGATCGTAGTAGATGGAGCAGGGTTGGAGTCGGACGTGGaggatctaATGCTCACAGTGATGGAGGCGTCCAGTTTCACTCCATCAGTCTACAGTGTTCACGCCCTCACACTGCTAGCGGAGgtgTTGGCTCACCTGTTGGACATGGTGTTCTACAGTGATGAGAAGGAGAGGGTGATCCCCCTGTTGGTCAACATCATGCACTACGTTGTGCCATATTTACGCAaccacagTGCCCACAATGCTCCGAGTTACCGGGCGTGTATTCAGCTCCTGAGCAGTCTGAGTGGATATCAGTACACACGGCGGGCGTGGAAGAAAGAAGCCTTCGACCTGTTCATGGATCACACCTTCTTCCAGATGGACGCGTCGTGTGTGAGCTActggaGAGCCATCATAGACCACCTGATGACCCATGATAAGACCACTTTCAGAGATctgatgaCGCGTGTAGCTGTAGCTCAGAACAGCTCTCTGAATCTCTTCACTAATCGGGATGCGGAGCTGGAGCAGAGAGCCATGCTCCTCAAACGCCTCGCCTTCACCATCTACAGCAGCGAAGTGGACCAGTACCAAAAGTACCTCCCAGATATacaggAGCGGTTGGTGGAGAGTCTGCGTCTCCCTCAGGTACCGATCCTGCATGCTCAGGTGTTCCTGTTCTTCAGAGTTCTGCTGCTGCGCATGTCTCCTCAACATCTCACCTCACTGTGGCCCACCATGATCACTGAGctggTTCAGGTGTTTTTACTGATGGAGCAGGAACTCACTGCAGACGAGGACAtcaccagGACGTCGGGTCCCTCGGTCGCAGGACTGGAGACAACGTACTCGGGAGGAAACGGATTTTCGACGTCCTACAACAGCCAGCGCTGGCTCAACCTCTACCTGTCTGCCTGCAAACTGCTGGATCTGGCGCTCACTCTGCCCTCCGAGAGTCTCCCGCAGTTCCAGATGTATCGCTGGGCGTTCATCCCCGAGTCCTCGGATGATTCCGGTCTGGAGGTGCGCAGACAGGGCACACACCAGAGAGAGTTTAAACCCTACGTAGTGCGACTGGCAAAGCTGCTGAGGAAAAGAGCGAAgAAAAGCGCAGAAGAAGACGTCTCGGGCCGGACGTTAGCGTGGGAGCCTGGACGCTTGACCCTGACGCTGTTCGGGATCCGCAGCATCGAGCAGCTCCTGCCCTTCTTCACCGCGCTCAGTCAGGTGTTCAGCAGCAAATCAGGCATCAGGTCAGCGTCATTCCACAGCAGCGCCCCGCCCAGCGACGCTCCGAACGCCCCGAAAAACACCAAACACGAGAGCCAGAAAATGTTCTGGAGCCGAGCCAGACACGACATCGAGGAGATGGTGGAGAAAGACTTCCTGGAAGGGCTCATAAAAACATGATCGAACCCGGaacacataaatgtaaataatggtTGAACTGTGGGAAACACTAACACCTCAACTTTTAGATTAAATCAAAAAGGATTTAAGTATTAAACAAGAGAACTTTGTATatgggttttttctttttctatttataattaatgttttttccaaattattatttaatttaaagtctTTTATCTGTGGAGGGTGGCCGTGATTGCACTCGTTACTTTAAACCCTCTGAATAATGTGAAGATTCTGTCATTCCATGTTGTGGTGAAAATAAAGAGACATATCgttaaaaaaatactgctaAAAACTGCTAAAAAATAACGTTAAAAAGTAACGGCTCGTAGCAAAGCTCAGGCTAAATCAGGATTATTTAACAAACTGGACTTGCACTAATGACTTCACTTTTCCACACATCTGTAGATCTTCTTTAACCAGagctgtgtctcagatcacacacgTCTGTACTAGATGGGATTTTCAGATGGTTTTTAATCTTAAACCACAGGTAGGGTTaggggtcagggttagggttaggggtcagggttagggttaggggtcagggttagggttagtggttggggttagggttagtggtTGGGGTTAGGGATCAGGCTTAGGCTTAGGGTCAGGGTTcaggttagggttagtgttaggggTCAGGGTCAGTGTTAGGTgtcagggttagggtcagggtcaggggtTAGGATGATCCTGTTAGCAAACACTGTTGGTTAAATTAGCATCAGCTCTGttgtttatatcacattcattttaacattagATACAAAATGTTAAATTGAATCCTCTCCATAATGATCCCATGTACGAGTCTGTTCCATTCTGATCTTCTACATTACTTCTCTACACAGCACATGTGTGTAGTCAGATattgtgatttgagacacagctgaTGAAATGCGATGCTGCCTGCATGGCCCTCAGACTGAGCAACGCTGCCgttaaacaccactgacctgCTGAAATAAACCAGAACTTTGATTATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU369779 lncRNA upstream 51168 187105 ~ 188110 (+) True G312175
TU369778 lncRNA upstream 51168 187163 ~ 188110 (+) False G312175
TU369805 lncRNA upstream 56236 180593 ~ 183042 (+) True G312195
TU369804 lncRNA upstream 59304 179675 ~ 179974 (+) True G312194
TU369801 lncRNA upstream 59738 177843 ~ 179540 (+) True G312193
TU369836 lncRNA downstream 141578 413619 ~ 501389 (+) False atpv0e2
TU369861 lncRNA downstream 210886 482927 ~ 483213 (+) True G312237
TU369833 lncRNA downstream 224669 496710 ~ 501389 (+) False atpv0e2
TU369834 lncRNA downstream 224669 496710 ~ 501389 (+) False atpv0e2
TU369835 lncRNA downstream 224669 496710 ~ 501389 (+) True atpv0e2
XM_034314800.1 mRNA upstream 45744 190317 ~ 193534 (+) False pnrc2
XM_034314841.1 mRNA upstream 207423 21303 ~ 31855 (+) True kpna5
XM_034314844.1 mRNA upstream 208022 21295 ~ 31256 (+) False kpna5
XM_034297766.1 mRNA downstream 2781 274822 ~ 318962 (+) True snap91a
XM_034297768.1 mRNA downstream 3118 275159 ~ 318962 (+) False snap91a
XM_034297778.1 mRNA downstream 65294 337335 ~ 388347 (+) True me1
XM_034297779.1 mRNA downstream 65571 337612 ~ 388347 (+) False me1
XM_034297770.1 mRNA downstream 185100 457141 ~ 488658 (+) True usp45
TU369780 other upstream 46044 189539 ~ 193234 (+) True pnrc2
TU369781 other upstream 46044 189539 ~ 193234 (+) False pnrc2
TU369797 other upstream 63737 174238 ~ 175541 (+) True G312191
TU369775 other upstream 144353 93899 ~ 94925 (+) True G312172
TU369774 other upstream 146363 92484 ~ 92915 (+) True G312171
XR_004576918.1 other downstream 3118 275159 ~ 312728 (+) False snap91a
TU370232 other downstream 548514 820555 ~ 838522 (+) False jph1b
TU370320 other downstream 856884 1128925 ~ 1131683 (+) False paxip1
TU370328 other downstream 859842 1131883 ~ 1136020 (+) False paxip1
XR_003404390.2 other downstream 1693699 1965740 ~ 1977309 (+) True c21h5orf22

Expression Profile