RNA id: XM_034297762.1


Basic Information

Item Value
RNA id XM_034297762.1
length 5025
RNA type mRNA
GC content 0.53
exon number 23
gene id LOC113543344
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 505627 ~ 522026 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGAGGCGGAAAGCTCTCCACGGCTGTCCGCTGGCTCGGTGAGCGCGCGCGCGTCAGCAGTGAGGCAGCAGGTCGCTTCAGCTTCACTCACTGAGGCGACTTTTAGCTTTTATAAAACTCCACAACGGCTCGTCAGAACCGGGCCAGAACCTTCCGGATCATCACTTCTCACTCAGatCTCTCGTTTCTCATCTTATCAACTGCGTTTCCACGTTGATGCCATGCGTCAGGTCAGGTGACCTGTTCCCTGAGTCGTGACCTTTCACCCCCTGACCTCCTCCATGTCAGGTGAGTCTGAGCTGAAGTCTTACCTGTCGGGGGGCGGGtctgaagaggaggaggagagcggGTCTCCCTGCGGCGCCATGTCTCACCTGCACGAAATGGGCGGAGCCTCGGATGGGAGCGACAGCGGAAACGACCCGGCCGCTTCCCCGAGTTCCCGCCCACCGCTTCACGAAGACATGGAGATGGGCGGGAACGGCTCGAGCGGGAGCGGCACAGAATCCCACGGCAACGAGTCACATGGCAACGAGTCCCACGGCAACGAGTCCGTAGGAAGTTCGAGCGGCAACAGCAAAGACTCGGCTCTGTTAGAATCATCAGGCAGCAACAAGAGttcgAACTCTCAGAGTCCGTCTCCCCCCAGCAGCTCCAACGCCTACAGCCTGGTGAGCTCAGAGCAGGACCACCCATCCACCAGTggctgcagcaGCGAGCAGTCAGCGAAGGCCAAAACTCAGAAGGAGCTCTTTAAGACCCTGAAGAAGCTGAAGCTTCACCTGCCTGCTGAGAAACGCAGCAAAGGTCGAGCGAGCACGTTACACACACTCCGTTACGCACTGCGCTGCGTCAAACAGGTCAAagCTAATGAGGAATATTATCAGATGTTGATGATAAACGACAACCAGCCGCCAGGTCTGGACGTTTCCTCGTACACCATCGACGAGCTCAACAGCATCACGTCTGAATACACACTCAGAAAcacagatatcTTCGCCGTAGCCGTGTCCCTGATCACGGGGAAGATCGTGTACATATCGGAGCAGGCGGCGGCGATCCTGCACTGCAGTAAGGACGAGTTTAAGGACAGGAAGTTTGTGGAGTTTCTGACGCCGCAGGACGTGAGTGTGTTCTACAGCTTCACCACTCCGTACAGACTGCCCTCATGGAGCATGTGCACCGGGGCggagtCTTCAGCTGCAGATTTTGTTCAGGAGAAATCTTTCTTCTGCAGAATCAGcggtggGAAGGAGAAGGAAGGGGATCTTCAGTATTACCCCTTCAGGATGACTCCGTATCTGATGAAGGTTCAGGACCCCGAACTGTCAGAGGAACATTTCTGCTGCCTCATACTGGCTGAGAGAGTACACTCAGGATAcgaggcaCCCAGAATCCCGCCAGACAAAAGGATCTTCACtacgacacacacacccaactgTGTGTTCCAGGATGTTGACGAGAGggcGGTGCCTCTGTTGGGGTATCTTCCACAGGACCTGATTGGGACCCCCATTCTTCTTCACCTTCATCCTGATGACAGACCACTGATGCTGGCCGTCCATCGCAagatTCTGCAGTACATGGGTCAGCCGTTCGATCACTCCTCCATACGCTTCTGCACGCGGAACGGCGAGTACGTTACCATAGATACCAGCTGGTCTAGTTTCGTCAACCCCTGGAGTCGCAAAGTGTCCTTCGTCATCGGACGACACAAAGTGCGCATgggCCCTGTGAACGAGGATGTGTTTTCAGCTCCTGCTTTCACAGAGGGGAAAATCATGGACTCGGACATCCAGGAAATCTCGGAGCAGATCCATAAAATTCtgctgcagcctgtgcacTGTATGGGCTCCAGCGGTTACGGTAGTCATGGCAGCAATGGTTCCCATGACCACCCAACCACATCCAGTGAAAGCAATAGCAATGGCAACGTTGCCGTTGGCAGCAGCACCACCACCGGCCACGAGGAGAAGAACAAGAGCAAACcgaggtCATTCCAGGAGATCTGTAAAGGTGTTCAGATGCAGAAGACACAGGATCAGCTGGCCTCCACTTCTAAAGCAGACCAGaagaCAGGATTAAAGTATCTAGGAACAAAGCAGAAAGATGCCGCCCATGTGGTAAAAGGTGGTACTGCAGCTGTGGAGGAGCTCAGGGACCAAACTTTATACTCCTACCAGCAAATCAGCTGTCTGGATAGTgtgatcagATATTTGGAGAGCTGTAACACATCCGTCACGCCGAAGAGGAAGTACCAGTTCTCCTCCAACACGACCTCCTCCAACTCAGACGAGGAGAGGAAAGGATGTGACGGGGCGATGCCCAGCCCACAAGATCCTTTGAAGACCAATAAAAAGTCTCCGTCTGACGtagtgggcggggctttggCTCCTTTGGCCCTGCCCACTAAAGCAGAGAGTGTTGTATCCATCACGTCTCAGTGTTCATACAGCAGCACTATTGTACATGTAGGGGACAAGAAACCCCAGCCGGagtcagAGATCATTGAGGATGTCGCCGAAAGCCCCACCCCTCCTGCGCCAGTAAGCGTGATGACTCCGCCCACAGCCGAGCAGGGAGCCTATAGGAAACTGGGCCTGACCAAACAGGTGCTGGCGGCTCACACGCAGAAGGAAGAACAGGCGTTCCTGAGTCGCTGCAGAGACCTGCGTCTCACATCACTGCAGAAAACCTGTACAGACCGCTCCGAGAGAGACGGGGGACACGCTAACGACGCGCCCTCTGCTGCTCCTCCAGCCAAACCCGGCACGTCCGGGGCAGAACCGACCGCTAAAAGGAGCAGCCGAACCAGAAAGTCAAAGAAACCCCGGATAAGAAAACCCGAATCCTCGGACAGCGCCGTCTCTCAGCGCAGGCTCCGCCCACCCCTTCAGGGACTGAACCAGACGTCATGGTCGCCATCGGAGGCGTCTCAGTCTGCGTTCTCAGTGCCGTACCCTGCCATGGTTCCCGGGTACAATTTTTACCCCACTacactgccccctgctggcGACCGCGGGTCAGATGCCGCAACCGCTCAGGCTCCGCCCACTGCTCCTCAGTTCCCAGCCCCGATGGTCACACCGGTGGTGGCGTTTGTTTTACCCAGTTATATGTTCCCTCAGCTTGGCATGCCGGCACGCCCACCTTTCTACCCGGAGCAGCAGCCGGGTGTCAGCACTCAGCAGCCGAACTACAACCCCCAGAATCCCTTGCAACCTCAGCAAACACAGCCAAACTTCACTACCCAGCAGCCTTTGCAGCCTCAACAAGCCTACACCATCCAGCAACCGTTTACACCCCAACACATCTACGTTACCCAGAATCCCTTTCAACCCCAAGCTCCATTCACCCAGATGCAGTTCACTCCACAGACACCGCTCCCGTACCagatgacctctgaccccaggCTTCCTGTTCCCGAATCAGCTGAGGTCCCTTCCTCGTCTCCTCCGTCTCGCTCTCCGCCGCTGTTCGGCTCTCACTGCAGCTCTCCGTTACAGCTGGACCTGCTGCAGCTGGAGGACAAAGCGGATTCGCACAGCACAGCGCCACCGTCAGGATCCCGGGGGAACTGCAGCTCGGCGCAGGAGAAAAGCAGCAGCACCGCTACACAAGCAGTGGAGCCATGTTGTGTTGAAGACGGACCTCCGAGTGACGCCCTCTCCTCGTCCAGTGAGCTGATGGAGCTGCTGATGCAGGAGGACTCGGGATCGGCAACGTCCGCGTCCACAGGCTCCGCCTCCAACGGCTGCAACACCTCCAACAGCGGCACAGGGAGCAGTAAATATTTCGGGAGCGTGGATTCTTCTGAGCACGAGCACAAGCAGAAGAGGAAAGAAGATGGACAAAACTTCAAATATGTCCTCCAGGATCCTCTGTGGCTGCTCATGGCCGACACCGATGAGAAGGTCATGATGACTTACCAGGTGCCGTCACGggacaTGGAGAAGGTGTTGCGGGAGGATCGGGAGCGTTTGCGGCAGCTGCAGAAGAATCAGCCACGTTTCACTTCAGATCAGAGGCGAGAGCTCATAGAGCAGCACCCGTGGATGAGACGAGGGGGTTTACCTAAAACCATCAGcgtcaaggagtgtctTTACTGCGAGAACGACGCCGGCGCTCTGTTAGAAGACGAGCTGCCTGAAATGGACCTCGGCATTCTGGGAGGAGAGGTGGTACCAGAAGAGGGCGTGTCTCACgtacaggaagaggaggagcatCGAGGCTTAGACTGTGTTTCGTAGCAACTCCCAAAAAAACGTAAAAACGTAGCATGCTTTCAGACAATGGGATCTTccagctcaacacacacacacacacacacacactatctaggctttttttttaatgccagatAACCTCATTTTAcctttacctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcacactccTGAACTTGCAGATCAGATCATTAACACTAGCACACTGTGATACGAGGAGTGAAAACAGTTTTGTCAGAAATGCTGTGACATAAAACAAtagaattaaatgtaatttttttaataaatgtgaagAGGATTTGAGTAAAATGGTGCAGACTGTATAAACTATaagctgtgtttattattcacACCACAAAACTCccacatttacacacaggaCCAGGAAATACTTtctcatttttcaaacaaaactaTGATGAATAAAGTCTTCTGGTTATCTTTAGTTAAcgttaatcattttatttatgtaactttATAACttactgttttgctgtttttcgTCTGGTTTAGGTCTTTATTTTTTcgtcatgtttttttattacatattccTCGAGTATTTTTGTtggtattttttatatttgtgtttattgttagCTTCATTCGGGGACTAAgttagtctgtttatttatttaaactctgTGCTGCTATTGGCGACTCGCTGGTTGTGTTGACGGAGCTGACGATCGTTTCTGTTActtcctgtgtgttttgtggtgtAAAGGATGAATAATAAACGACAGAGCGTGATCTCTGCACTGTTTTATTCAA

Function

GO:

id name namespace
GO:0016525 negative regulation of angiogenesis biological_process
GO:0042542 response to hydrogen peroxide biological_process
GO:0009411 response to UV biological_process
GO:0043153 entrainment of circadian clock by photoperiod biological_process

KEGG:

id description
K02633 PER2; period circadian protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU369836 lncRNA upstream 4238 413619 ~ 501389 (+) False atpv0e2
TU369833 lncRNA upstream 4238 496710 ~ 501389 (+) False atpv0e2
TU369834 lncRNA upstream 4238 496710 ~ 501389 (+) False atpv0e2
TU369835 lncRNA upstream 4238 496710 ~ 501389 (+) True atpv0e2
TU369838 lncRNA upstream 4238 496710 ~ 501389 (+) False atpv0e2
TU369841 lncRNA downstream 52215 574241 ~ 576923 (+) True G312221
TU369918 lncRNA downstream 189468 711494 ~ 712297 (+) True G312280
TU369914 lncRNA downstream 191995 714021 ~ 717291 (+) False LOC113543349
TU369915 lncRNA downstream 193613 715639 ~ 759328 (+) True G312277
TU369922 lncRNA downstream 217437 739463 ~ 743129 (+) True G312283
XM_026940836.2 mRNA upstream 5289 496689 ~ 500338 (+) False atpv0e2
XM_034297770.1 mRNA upstream 16969 457141 ~ 488658 (+) True usp45
XM_034297769.1 mRNA upstream 16969 457141 ~ 488658 (+) False usp45
XM_034297774.1 mRNA upstream 16969 457141 ~ 488658 (+) False usp45
XM_034297771.1 mRNA upstream 16969 457141 ~ 488658 (+) False usp45
XM_034297686.1 mRNA downstream 23644 545670 ~ 561137 (+) True LOC113543345
XM_034314814.1 mRNA downstream 94692 616718 ~ 677782 (+) True mre11a
XM_034314815.1 mRNA downstream 94725 616751 ~ 677782 (+) False mre11a
XM_034314816.1 mRNA downstream 94747 616773 ~ 677782 (+) False mre11a
XM_026941468.2 mRNA downstream 161780 683806 ~ 694338 (+) True LOC113543348
XR_004576918.1 other upstream 192899 275159 ~ 312728 (+) False snap91a
TU369780 other upstream 312393 189539 ~ 193234 (+) True pnrc2
TU369781 other upstream 312393 189539 ~ 193234 (+) False pnrc2
TU369797 other upstream 330086 174238 ~ 175541 (+) True G312191
TU369775 other upstream 410702 93899 ~ 94925 (+) True G312172
TU370232 other downstream 298529 820555 ~ 838522 (+) False jph1b
TU370320 other downstream 606899 1128925 ~ 1131683 (+) False paxip1
TU370328 other downstream 609857 1131883 ~ 1136020 (+) False paxip1
XR_003404390.2 other downstream 1443714 1965740 ~ 1977309 (+) True c21h5orf22
XR_003404395.2 other downstream 1611188 2133214 ~ 2143313 (+) False tgs1

Expression Profile