RNA id: XM_034297765.1


Basic Information

Item Value
RNA id XM_034297765.1
length 2556
RNA type mRNA
GC content 0.49
exon number 9
gene id LOC117595741
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 217927 ~ 543043 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCAGCTCCTGTTCACCCTGAACACGTGATGATGTGGATGTTAAAGGGGTTTGATCTGAACATTAAGACTCCATTCAGCAGCGAGCACCTCATCAGgacaTCACCTCAGCACTGGCGTCACCATGGTAACCGTGTCAGTCGTGTTCCTCCTGCTTTCAGCCTTTTCTCCTCCAGTCCACAGCCGCCTCACTACCTTCCATCTCATTCTGGTTGACATGAATCAGACTGAGGCTCGGGCAGCTTGCAGAGAAAATTACATCGATCTCGTCACTCTGTACTCTGATGAAGACAACACTGAACTGTATATGAAGACTAATGTGTATTGGGGATGGATCGGTCTCTATCGCGGTCAGTTCAGTGAGAAATGGTCTAATGGTGATCCTGTAACATTCAGAAATCTGACAGGGGATTGTGGGACATCGAGCTGCTGTGCTGCTATGAAACCTGATGgttcatgggaaagtcttcagtgcACAGGGACGAGATATTTCATGTGCTATGAACAAGCTTCTTCTCAGACTCCTAATTATCATCTAATCCGTGAGAATAAGACCTGGTATGAAGCTCAGCGTTACTGCAGGGGGAACTACACTGACCTGGTCAGCATCAGAGATCAGCAGCAAAATGAAGAGGTGAAGATTAAAGGGTTAAACAGCAGCACGTCCTTCTGGATCGGCCTGCTGCGTGATGACTGGCAGTGGACTGATGGAGGAAACTCCACCTACAGAAACTGGGCGAGCGGTCATCCTCAGCCATCACCATACGACTGTGTACTACTGTGGGGAAGGGAATGGTATTCAGTGCCGTGCAGTAATCGTAACACTCCTCTGTGCTACGCCTTTTCTCCTCCAGTCCACAGCCGCCTCACTACCTTCCATCTCATTCCGGTTCACATGAATCAGACTGAGGCTCGGGCAGCTTGCAGAGAAAATTACATCGACCTCGTCACTCTGTACTCTGATGAAGACAACACTGAACTGGATAATATGATGACTTATATGTATTGGGGATGGATCGGTCTCTATCGCGGTCAGTTCAGTGAGAAATGGTCTAATGGTGATCCTGTAACATTCAGAAATCTGACAGGGGATTGTGGGACATCGAGCTGCTGTGCTGCTATGAAACCTGATGgttcatgggaaagtcttcagtgcACAGGGACGAGATATTTCATGTGCTATGAACAAGCTGCTTCTTCTCAGACTCCTAATTATCATCTAATCTGTGAGAATAAGACCTGGTATGAAGCTCAGCGTTACTGCAGGGGGAAATACACTGACCTGGTCAGCATCAGAGATCAGCAGCAAAATGAAGAGGTGAAGATTAAAGGGTTAAACAGCAGCACGTCCTTCTGGATCGGCCTGCTGCGTGATGACTGGCAGTGGACTGATGGAGGAAACTCCACCTACAGAAACTGGGCGAGCGGTCATCCTCAGCCATCATCACCATACGACTGTGTACAAGTGAGGCGAGGGAGATGGTATTCAGTGCCATGCAGTAGTAATTATTACTACACTCTGTGCTACGCCTTTTCTCCTCCAGTCCACAGCCGCCTCACTACCTTCCATCTCATACCGGCTACAGTGAATCAGACTGAGGCTCGGGCAGCTTGCAGAGAAAATTACATCGACCTCGTCACTCTGTACTCTGATGAAGACAACACTGAACTGTATAATAGCAGTTACGGCTGGATCGGTCTCTATCGCGGTCAGTTCAGTGAGAAATGGTCTAATGGTGATCCTGTAACATTCAGAAATCTGACAGGGGATTGTGGGACATCGAGCTGCTGTGCTGCTATGAAACCTGATGGTTCATGGGAAAGTGCTCAGTGCACAGGGACGAGATATTTCATGTGCTATGAACAAGCTGCTTCTTCTCAGACTCCTAATTATCATCTAATCCGTGAGAATAAGACCTGGTTTGGTGCTCAGCGTTACTGCAGGGGGAAATACACTGACCTGGTCAGCATCAGAGATCAGCAGCAAAATGAAGAGGTGAAGATTAAAGGGTTAAACAGCAGCACATCCTTCTGGATCGGCCTGCTGCGTGATGACTGGCAGTGGACTGATGGAGGAAACTCTGCCTACAGAAACTGGTGGATCGGTCATCCTCAGCAATCATCACCATACGACTGTGTAAAAGTGAGGCAAGGGAAATGGATTTCAGAGCCGTGCAGTAATTATTACTACCCTCTGTGCTACAACACTTCCATCCATGTGAGTGATGTGGCTCTGAGCTGGGAGAAAGCGCTGGATTACTGTCATGAAGGGAACAGGGCTGGAATTCTGAACATCGATTCTGAAGCTGAACAGGAAGAGTTGGAGTCTGAGCTCAGGAGGAGGCGTGTCCCCCCAGGGTCTCTGTGGGTGGGGCTTGGACCGAACCGTCTCTCTGAGATGAAGGCGTCGTCCCGTCCGCTGACCTGCGAGGAcgtaaagagacagacagaaccTCCGCTGTCTCACTGccctgctgacacacacactgcagaagcAGCACCTGATTATGTGATGGACTCTGCTGAACTTCGAGTCGTGtgtaaattgaaataaaagG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU369779 lncRNA upstream 29817 187105 ~ 188110 (+) True G312175
TU369778 lncRNA upstream 29817 187163 ~ 188110 (+) False G312175
TU369805 lncRNA upstream 34885 180593 ~ 183042 (+) True G312195
TU369804 lncRNA upstream 37953 179675 ~ 179974 (+) True G312194
TU369801 lncRNA upstream 38387 177843 ~ 179540 (+) True G312193
TU369841 lncRNA downstream 31198 574241 ~ 576923 (+) True G312221
TU369918 lncRNA downstream 168451 711494 ~ 712297 (+) True G312280
TU369914 lncRNA downstream 170978 714021 ~ 717291 (+) False LOC113543349
TU369915 lncRNA downstream 172596 715639 ~ 759328 (+) True G312277
TU369922 lncRNA downstream 196420 739463 ~ 743129 (+) True G312283
XM_034314800.1 mRNA upstream 24393 190317 ~ 193534 (+) False pnrc2
XM_034314841.1 mRNA upstream 186072 21303 ~ 31855 (+) True kpna5
XM_034314842.1 mRNA upstream 186671 21279 ~ 31256 (+) False kpna5
XM_034297686.1 mRNA downstream 2627 545670 ~ 561137 (+) True LOC113543345
XM_034314814.1 mRNA downstream 73675 616718 ~ 677782 (+) True mre11a
XM_034314815.1 mRNA downstream 73708 616751 ~ 677782 (+) False mre11a
XM_034314816.1 mRNA downstream 73730 616773 ~ 677782 (+) False mre11a
XM_026941468.2 mRNA downstream 140763 683806 ~ 694338 (+) True LOC113543348
TU369780 other upstream 24693 189539 ~ 193234 (+) True pnrc2
TU369781 other upstream 24693 189539 ~ 193234 (+) False pnrc2
TU369797 other upstream 42386 174238 ~ 175541 (+) True G312191
TU369775 other upstream 123002 93899 ~ 94925 (+) True G312172
TU369774 other upstream 125012 92484 ~ 92915 (+) True G312171
TU370232 other downstream 277512 820555 ~ 838522 (+) False jph1b
TU370320 other downstream 585882 1128925 ~ 1131683 (+) False paxip1
TU370328 other downstream 588840 1131883 ~ 1136020 (+) False paxip1
XR_003404390.2 other downstream 1422697 1965740 ~ 1977309 (+) True c21h5orf22
XR_003404395.2 other downstream 1590171 2133214 ~ 2143313 (+) False tgs1

Expression Profile