RNA id: XR_004576918.1


Basic Information

Item Value
RNA id XR_004576918.1
length 1749
RNA type misc_RNA
GC content 0.55
exon number 19
gene id snap91a
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 274822 ~ 318962 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGTCGGGACAGACGTTAACGGACCGGATCGCCGCGGCGCAGTACAGCCTGACCGGATCCGAGGTGGCGCGCGCTGTGTGTAAGGCCACCACGCATGAAGTAATGGCACCCAAGAAGAAACACCTGGAGTACCTGATCCAGGCCACGCAGGAGTCGAACGTGAACATCCCTCAGATGGCCGACACGCTGTTCGAGCGAGCGGGGAACGCCAGCTGGATCGTTGTGTTTAAGGCTCTGGTCACTACACACCACCTGATGGTCCACGGGAACGAGAGATTTATCCAGTTTCTCGCCTCCAGAAACACGCTGTTCAACCTCAGCAACTTCCTGGATAAGACCGGATCACACGGTTACGACATGTCCACCTTTATCCGGCGCTACAGCAGGTATCTGAATGAAAAAGCGTTTTCTTACAGACAGATGGCCTTCGACTTCGGCCGAGTGAAAAAAGGaaacgACGGTGTGATGAGGACGATGGCTACAGATAAACTCCTGAAAGGCATGACCACGCTGCAGAATCAGATCGACGCTCTGCTGGAGTTTGAAgtccATCCTAAAGATCTGGTCAATGGCGTCATCAACGCTGCGTTTTTACTCCTCTTTAAGGACCTGATTAAATTATACGCCTGCTACAACGATGGAATTATTAATTTACTAGaGAAATTTTTCCAGATGAAGAAAGGGCAGTGCAAAGACGCTTTGGAAATTTACAAAAAGTTCCTGACACGAATGACCAGAGTTTCAGAGTTCCTCAAAATTGCAGAGCAAGTCGGAATTGATAAGAGTGATATTCCTGAACTTACCCAGgcccCTGAGAGTCTGCTGGAGTCTCTGGAGACACACCTGAACACGCTGGAGGGGAAGCGGGGTGATGAGTCACCAACTAAGaagagttCTTCAGTCAGTAATGGAActcctgcaggaactccagtgAAGACGGTGGATGAAGTTCctgcaccagcagcagcagaaccTCAGAACACGACTGCGGCTGCAGCTACAGCCGGTGGATTCAGTGATTTGGTGGATTTTGATTTATTAGCTCCGAGTGCAGGCGCTTCAGCAGCTCCGGCGTCTGCGTGGGGAGATCTGCTGGGTGAGGctgctgCCGTTAGTTCTTCCTCGGCACTCCTCTCTGAGTCTGAATCTGTCGCTCCTGCTGAAGTCGCTGAAACGAGTCACGCTGCTGCAGCTGAACCTgcggctaatgctaatgctactGCTCTGCCTAGCGCTggtgctaatgctaatgctaacactgcGGCTCCCGCGCCGAGCTCCCTGTCAGACATGGACCTGTTCGGAGatGCGTTCGCTCCTTCCCCGGGTGAGGGATCGGCTGAAGGTGGAGCTCCAGCAGTGGCTGCTGATGCTTTTACTGGATCTGACCCCTGGGCTCCCTCAGAGGGGAGTGTGGATGTCGCCCCAGAGCTCGACCTTTTTGCCATGaagccagcagagggcagcacTGAGAGCCCCGCTAACGGAGAGCCGAGCATCACGCCCACTGTCGCCCCTGAAAATGCCCCCGAAACCACCCCTCCTGCCCCCTGTGCCCCCACCACAGACTCTGCGGCCCCCGGCCCCCCTGGCCCCCCCGGCCCCTGTGGCGCTAGACATCTTTGGCGatatgtTTGATTCTGTGCCTGAGCAAAACGCTTCCTCAGAGCCCAAAGCTGCCGTTACTCCCACTAACGTAGATCTGTTCGGTGCAGATCTTCCTGCTGTCTCTCGCGGGCCGTCACCTTT

Function

GO:

id name namespace
GO:0048268 clathrin coat assembly biological_process
GO:0030118 clathrin coat cellular_component
GO:0005545 1-phosphatidylinositol binding molecular_function
GO:0030276 clathrin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU369802 lncRNA upstream 8622 177843 ~ 266537 (+) False G312193
TU369779 lncRNA upstream 87049 187105 ~ 188110 (+) True G312175
TU369778 lncRNA upstream 87049 187163 ~ 188110 (+) False G312175
TU369805 lncRNA upstream 92117 180593 ~ 183042 (+) True G312195
TU369804 lncRNA upstream 95185 179675 ~ 179974 (+) True G312194
TU369836 lncRNA downstream 100891 413619 ~ 501389 (+) False atpv0e2
TU369861 lncRNA downstream 170199 482927 ~ 483213 (+) True G312237
TU369833 lncRNA downstream 183982 496710 ~ 501389 (+) False atpv0e2
TU369834 lncRNA downstream 183982 496710 ~ 501389 (+) False atpv0e2
TU369835 lncRNA downstream 183982 496710 ~ 501389 (+) True atpv0e2
XM_034297758.1 mRNA upstream 3118 239278 ~ 272041 (+) True dop1a
XM_034297756.1 mRNA upstream 3118 239278 ~ 272041 (+) False dop1a
XM_034297760.1 mRNA upstream 3118 239278 ~ 272041 (+) False dop1a
XM_034297759.1 mRNA upstream 3118 239278 ~ 272041 (+) False dop1a
XM_034297761.1 mRNA upstream 4892 239278 ~ 270267 (+) False dop1a
XM_034297778.1 mRNA downstream 24607 337335 ~ 388347 (+) True me1
XM_034297779.1 mRNA downstream 24884 337612 ~ 388347 (+) False me1
XM_034297770.1 mRNA downstream 144413 457141 ~ 488658 (+) True usp45
XM_034297769.1 mRNA downstream 144413 457141 ~ 488658 (+) False usp45
XM_034297774.1 mRNA downstream 144413 457141 ~ 488658 (+) False usp45
TU369780 other upstream 81925 189539 ~ 193234 (+) True pnrc2
TU369781 other upstream 81925 189539 ~ 193234 (+) False pnrc2
TU369797 other upstream 99618 174238 ~ 175541 (+) True G312191
TU369775 other upstream 180234 93899 ~ 94925 (+) True G312172
TU369774 other upstream 182244 92484 ~ 92915 (+) True G312171
TU370232 other downstream 507827 820555 ~ 838522 (+) False jph1b
TU370320 other downstream 816197 1128925 ~ 1131683 (+) False paxip1
TU370328 other downstream 819155 1131883 ~ 1136020 (+) False paxip1
XR_003404390.2 other downstream 1653012 1965740 ~ 1977309 (+) True c21h5orf22
XR_003404395.2 other downstream 1820486 2133214 ~ 2143313 (+) False tgs1

Expression Profile