RNA id: XM_034297771.1


Basic Information

Item Value
RNA id XM_034297771.1
length 2312
RNA type mRNA
GC content 0.53
exon number 15
gene id usp45
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 457141 ~ 488658 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAAGCTCGACCACGTGACACGTGCGTTTTCCGTGTTGTTTCGAAATGCCACAGACTGCGCTAACCAAGTCGGGATAAtgtgaataatataaatataagataATTCTTTAATTTCAACAGAAACATTCTGGAGTTAATAATATTAGGAGGAAAAacagaatttatacatttatatcttTTTCCGGAGACTTTGGGACAAGTGTCAGGTAGACGTGTTTACGGATGTTCCTCTTTTCCAGATACAAATGCGGCTAAAAGATCCCTTCTCCTTAAAAACGGCCGAGATGACGAAGCGGTCCAACAAGCCGAAGAAACCTCGCGAGGAGGAATCGTCAGACGAGGTTAGCGgactGACGTGTCAGCATGTGAGTAAAGCGGTGGAGTTGAACTCGGTGAAGAAAGCAGTGACGGGAAGTTTGTGGTCCGTTTGTTCCGACTGCATGAGGGAGAGAGACGTGTTCGAGTCGGAGCCGGCCGGAGCTCACGACATCCTGGTGTGTCTCAAGTGTGGCTTCCagggatgCGGTCAGTCGGAGAGGCAGCACTCAGTGAAGCACCAGCAGACTCATCACTCAGACTCTCACTGCATCAGCATCAGCCTCAGCACCTGGAAGGCctgGTGTTTTGAGTGTAATGAGGAACTCTCCACACACTGCAATAAAAAAGCTCTGGCTCAAACACTCGACTTCCTGCAGAAACACTCAGCGAAGTCAGCGTCAGgATCAACGTCAAAAATCATCAAACTGATCGAGGAGCCTGTGGAATATTCGGAGCCGGTGCGAGGGAGGAGTCCGGTGAACAGCACTTTAATTCCCGTTAAAGGAATCGTAAATCTTGGAAACACGTGCTTCTTCAACGCTGTCATGCAGaatCTGTCTCAGACGCACATGCTTAATGACCTCATACAGGAAGTGAAGGAGAAAGGACACAAGATGAAGATCTGCCTCCCTCCTGAGACCAACCTGggccCACTGACCGTGACTCTGGCCGGTCCGGAACCGCTCACATCCGCCATGATGATGTTCCTGTACGGTATGAAGGAGGCGGGGAAAGGACCTGTATCTCCCAAAATCCTCTTTACTCAGCTCTGTCAGAAggCACCTCGGTTTAAGGGTTATCAGCAGCAGGACAGTCAGGAGCTCCTACACTACCTGTTGGACTCGGTCAGGATGGAGGagaacaagCGAATCAAAGCGGCCATCCTGAAAGCGTTTAATAATCCCACTGAGAGAACGGCTGATGAGGAGACCAAACGCCAAGTcaaagcgTACGGTAAAGAGGGCGTGAAGATGAACTTTGTTGATCGCATCTTTGTTGGCGAGTTGACGAACACCATTATGTGTGAAGAGTGTGAACATATTTCTACAGTGAAGGAGGCTTTTATCGACATCTCTCTGCCCATCATcgaagaaagaATCTCCAAACCCTCGAACCCGGGCAGGCTGAGCAAACCGGGCCGAGACCAGGAGTCCCCGAGCGGCCACGCTGACGAGCTGTCTCATTCACACGTCGGCCGGAACGGGAAGAAGCCGAGCGCCCAGaagcttCTGGGTCGAAGATCATCCACTTGTCATGACACCAGAGGAACAGACGAATCAGCGTCCACCCTACGAGAAGACGCAGCATGTTCGAGTGGGCGCCGTTACCACGGCGACACAGCAGGCAGCCTATCGGACGCCAGCGATAAAGACTCGTCTCCTCAGGACAGCAGCAACGACGCAGACAGCGAGGCGTCCGAGTCTGAGTGCTCGCTGCGAATCTCCAGTTCCTCCAATAAAGCCTCGTCTTCGTCCTCCAGCGTGAACCCCGCCCCGTCTGCaccaagccccgccccttttgtCCGGGAGCAGACAGGAAGTGCAGTCGAACAGCTAGTGAGCGCGGTGTCTAAATTGGGGTTAGTGCACACGCCGCTAGATGGTCTTTCGCTCAGCCACggagtggaggagagagagagggagagagagagggagagagagagggagagagagagggagagagagagggagagagagagggagagggagcaCCAGGGCGCGTTCCAGGCGCTGTCACACAGCTACACCCCGGCGTCTAAAGAGTGTTCGGTGCAGTCCTGCCTCCATCAGTTCACCTCCATCGAGCTGCTGATGGGAAACAACAAGCTGCTGTGTGAGAACTGTACAGAGAGACGCCACAAACAGCACAGGAGGAGtggagataagAAAGTGGAGAAGGTGTACACGAGCGCCCGCAAGCAGATGCTGATCTCAGAGCTGCCACCTGTCGTCACACTGCACCTTAAACGCTTCCACCaggtctgaacacacaca

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU369802 lncRNA upstream 190604 177843 ~ 266537 (+) False G312193
TU369779 lncRNA upstream 269031 187105 ~ 188110 (+) True G312175
TU369778 lncRNA upstream 269031 187163 ~ 188110 (+) False G312175
TU369805 lncRNA upstream 274099 180593 ~ 183042 (+) True G312195
TU369804 lncRNA upstream 277167 179675 ~ 179974 (+) True G312194
TU369833 lncRNA downstream 8052 496710 ~ 501389 (+) False atpv0e2
TU369834 lncRNA downstream 8052 496710 ~ 501389 (+) False atpv0e2
TU369835 lncRNA downstream 8052 496710 ~ 501389 (+) True atpv0e2
TU369838 lncRNA downstream 8052 496710 ~ 501389 (+) False atpv0e2
TU369841 lncRNA downstream 85583 574241 ~ 576923 (+) True G312221
XM_034297778.1 mRNA upstream 68794 337335 ~ 388347 (+) True me1
XM_034297779.1 mRNA upstream 68794 337612 ~ 388347 (+) False me1
XM_034297766.1 mRNA upstream 138179 274822 ~ 318962 (+) True snap91a
XM_034297768.1 mRNA upstream 138179 275159 ~ 318962 (+) False snap91a
XM_034297758.1 mRNA upstream 185100 239278 ~ 272041 (+) True dop1a
XM_026940836.2 mRNA downstream 8031 496689 ~ 500338 (+) False atpv0e2
XM_034297762.1 mRNA downstream 16969 505627 ~ 522026 (+) True LOC113543344
XM_034297763.1 mRNA downstream 16969 505627 ~ 522026 (+) False LOC113543344
XM_034297686.1 mRNA downstream 57012 545670 ~ 561137 (+) True LOC113543345
XM_034314814.1 mRNA downstream 128060 616718 ~ 677782 (+) True mre11a
XR_004576918.1 other upstream 144413 275159 ~ 312728 (+) False snap91a
TU369780 other upstream 263907 189539 ~ 193234 (+) True pnrc2
TU369781 other upstream 263907 189539 ~ 193234 (+) False pnrc2
TU369797 other upstream 281600 174238 ~ 175541 (+) True G312191
TU369775 other upstream 362216 93899 ~ 94925 (+) True G312172
TU370232 other downstream 331897 820555 ~ 838522 (+) False jph1b
TU370320 other downstream 640267 1128925 ~ 1131683 (+) False paxip1
TU370328 other downstream 643225 1131883 ~ 1136020 (+) False paxip1
XR_003404390.2 other downstream 1477082 1965740 ~ 1977309 (+) True c21h5orf22
XR_003404395.2 other downstream 1644556 2133214 ~ 2143313 (+) False tgs1

Expression Profile