RNA id: XM_034297795.1


Basic Information

Item Value
RNA id XM_034297795.1
length 839
RNA type mRNA
GC content 0.49
exon number 8
gene id eif3k
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 21121725 ~ 21134401 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTGTTTCCGGTTCTTTCTGTCACTTCCGGTGTGGTTTGCTCCACTGTTCCGGTCTCCACGTGTGgagtttctatttttatttcctttattatttccattatcagtatttcagcagtttttattaaacatggCCACGTCTTTTGAGCAAATGCGCGCGAATGTCGCTAAACTTTTACGAGGCATCGACAGgtaTAATCCGGAGAATCTGTCGACGCTGGAGCGCTATGTGGAGACTCAGGCGAGAGAAAACGCCTACGACCTGGAGGCCAATCTGGCCGTGCTCAAACTgTACCAGTTTAACCCTGCCTACTTCCAGACCAGTGTGACGTCACAGATCCTGCTGAAGGCGTTAACGAACCTCCCACACACCGACTTCACACTGTGCAAGTGTATGATCGACCAACCACATCAGGAGGAGCGACCAATCAGACAGATCCTCTACCTCGGCAACCTGCTGGAGACCTGTCACTTTCAGAGCTtctgggcgAGTCTGGAGGAGAACAGGGAGCTGATTGATGGGATCACAGGCTTTGAGGACTCTGTTCGTaaatttatcTGCCATGTTGTAGGAATCACGTATCAGACCATCGAGCACCGGCTGTTAGCGGAGATGTTGGGAGACCCACTCGacaCTCAGGTGAAGGTGTGGATGAAtaaatatggatggatggaggatgatgatggtcGGATCTTCATCTATAATCAGGAGGAGAGCGTTAAACCCAAAAATATCGTGGAGAAGATCGACTTTGACAGTGTGTCCAGTATCATGGCAACATcgcagtgaaaacacacacacacacgcgcgcacacacacacacacacacacacacacaaa

Function

GO:

id name namespace
GO:0001731 formation of translation preinitiation complex biological_process
GO:0006446 regulation of translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0043022 ribosome binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580281.1 lncRNA downstream 131417 20981438 ~ 20990308 (-) True LOC117599936
TU383698 lncRNA downstream 175657 20932834 ~ 20946068 (-) True G323907
TU383699 lncRNA downstream 175657 20933229 ~ 20946068 (-) False G323907
TU383701 lncRNA downstream 175657 20933229 ~ 20946068 (-) False G323907
TU383719 lncRNA downstream 256775 20864465 ~ 20864950 (-) True G323923
XR_004580331.1 lncRNA upstream 4969 21139370 ~ 21146706 (-) True LOC117599984
TU383817 lncRNA upstream 63689 21198090 ~ 21198331 (-) True G323989
TU383831 lncRNA upstream 87775 21222176 ~ 21222600 (-) True G324001
XM_026911371.2 mRNA downstream 126086 20991887 ~ 20995639 (-) True LOC113524969
XM_034297737.1 mRNA downstream 145353 20946136 ~ 20976372 (-) True LOC113524960
XM_034314686.1 mRNA downstream 177929 20893743 ~ 20943796 (-) True abca4b
XM_026911354.2 mRNA downstream 341574 20774032 ~ 20780151 (-) True amy2a
XM_034314622.1 mRNA downstream 363783 20732601 ~ 20757942 (-) True LOC113524963
XM_026911898.2 mRNA upstream 717 21135118 ~ 21137825 (-) True si:ch1073-429i10.3
XM_034314846.1 mRNA upstream 717 21135118 ~ 21137039 (-) False si:ch1073-429i10.3
XM_034314689.1 mRNA upstream 4274 21138675 ~ 21147038 (-) True LOC113525403
XM_034314905.1 mRNA upstream 13480 21147881 ~ 21164789 (-) False ngef
XM_034314906.1 mRNA upstream 13480 21147881 ~ 21164628 (-) False ngef
TU383785 other downstream 24016 21052207 ~ 21097709 (-) True G323963
TU383705 other downstream 145388 20961573 ~ 20976337 (-) False LOC113524960
TU383704 other downstream 152556 20961426 ~ 20969169 (-) False LOC113524960
TU383689 other downstream 291621 20828026 ~ 20830104 (-) True G323902
TU383651 other downstream 407734 20710697 ~ 20713991 (-) False sh3glb1b
TU383786 other upstream 733 21135134 ~ 21137694 (-) False si:ch1073-429i10.3

Expression Profile