RNA id: XM_034314528.1


Basic Information

Item Value
RNA id XM_034314528.1
length 1345
RNA type mRNA
GC content 0.49
exon number 9
gene id cwc25
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18663158 ~ 18667572 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGGAAGTAGCTCCGTTCTCACTTCCAAAACAGACATGGCAGCCGTGTGAAGGAGACAAACATCAACGTTTGAGTAATTTCCCACATATTAAATCATATTTCCTTGAACTCTCTTCATCAACATGGGAGGCGGCGATCTTAACTTGAAGAAAAGCTGGCATCCACAGACGCTGAAGAACATCGAGCGTGTTTGGAAAGCCGAGCAGAAACACGAAGCTGAAAGGAAGAAGATCGAAGAGTTGCAGAAGGAGCTGAAAGAGGAGCGAGCTCGAGAGGAGATCACGAGATATGCGCAGGAAACCGGTGCAGTCAAGAAGAAGGATGAGCGTCTGGACTGGATGTATCAGGGCCCAGGGGGACAGATCTCCCGTGAGGAGTACCTCCTGGGTCGTCCCATTGATAAGCAGATCACACAGCAGTACGAAGAACCCGAGAGCGGGCCTTCTGCTGAAACCGGCCTCCTGCCCGGCTCCATCTTCAACTCCACCACCTCTATGTCCAGCATGGACATGGCCTCTAAAATAAGAGAAGATCCACTGTTTGATATCCGTAAGcgtgaggaggaaaaaaagagaagcattCTCACCAATCCTGTTAAAATGAAAGAGATACGCAAAATGttACGTGAGAATTTAGataaggagaaaaagaagaagaggaagaaggacAAGAAGGAAAAGCGAGATGAAAAGGAAAGGAGGAAGGATAAGAAACACAAACGGAGGAGTTCCAGCTCTGATGAGGAAGACAGGAAGCACAGGTCAAGGGAAGAAAATGGAGTCACAAACTCTCATTCACATCACAAATCTGGCTACGGACTGCAGTTACCAGCAGGCAGGTCATCTCAGTCATCAGAGTCGACCCACAGGAGGGACCGGAGTCGCTCTCCGCTGGGTTccagagaggaaaagaggaatcGTTCACCTCACAATCCCGACAGGCAACACAAATCTAAAGCTCCGAGCCCTTCGAGACCAAGAGAGCGCTATCACAGACCACAGAGCACCAACCACAGCAAGCATCTCTCGGCTGAAGAGctggagaagaggaggaaagaaaTGATGGGCTTCGCCcgtgagagagaggaggagagagagagcaacgtGCAGAGGTACAAACGACAAGAGgagcaggagaaagaaagagacagcaaGACCAAACAAAGCGGCCAGGCCACGTTCATACATAACATGAAGCTGGAGAGTGCTGCCACCTCGTCCGTGGAGGATCGGGTGAAGAGGAACATCCACTCCATTCAGAGGACCTCTGCCTCTCTGGAGAAGAACTTCATGAGAAGATAAAAAGTGGCAGAAGAAGGCATGCTGTCATTacggtttcttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU381857 lncRNA upstream 223292 18439167 ~ 18439866 (+) True G322462
TU381841 lncRNA upstream 230456 18432326 ~ 18432702 (+) True G322446
TU381819 lncRNA upstream 289275 18370727 ~ 18373883 (+) True G322429
TU381788 lncRNA upstream 319668 18338329 ~ 18343490 (+) True G322405
TU382137 lncRNA downstream 47823 18715395 ~ 18720439 (+) True G322696
TU382184 lncRNA downstream 97620 18765192 ~ 18765602 (+) True G322738
TU382190 lncRNA downstream 143533 18811105 ~ 18811652 (+) False G322744
TU382191 lncRNA downstream 143612 18811184 ~ 18812335 (+) True G322744
TU382193 lncRNA downstream 144931 18812503 ~ 18812848 (+) True G322746
XM_026946308.2 mRNA upstream 25454 18585063 ~ 18637704 (+) False fgf12a
XM_026946307.2 mRNA upstream 25454 18596537 ~ 18637704 (+) False fgf12a
XM_026946309.2 mRNA upstream 25454 18612197 ~ 18637704 (+) True fgf12a
XM_026946306.2 mRNA upstream 25454 18612198 ~ 18637704 (+) False fgf12a
XM_026946269.2 mRNA upstream 80938 18574380 ~ 18582220 (+) True mb21d2
XM_034314502.1 mRNA downstream 24620 18692192 ~ 18716552 (+) True LOC113546386
XM_034314503.1 mRNA downstream 24620 18692192 ~ 18716552 (+) False LOC113546386
XM_026946208.2 mRNA downstream 24620 18692192 ~ 18716552 (+) False LOC113546386
XM_034314504.1 mRNA downstream 24620 18692192 ~ 18713708 (+) False LOC113546386
XM_026946207.2 mRNA downstream 24634 18692206 ~ 18716552 (+) False LOC113546386
TU381842 other upstream 240527 18415817 ~ 18422631 (+) False pex5lb
TU381774 other upstream 435925 18226562 ~ 18227233 (+) False si:ch211-162e15.3
TU381775 other upstream 436022 18226562 ~ 18227136 (+) False si:ch211-162e15.3
XR_003404718.2 other upstream 1031550 17570649 ~ 17631608 (+) False egfra
XR_004580278.1 other upstream 1179481 17478834 ~ 17483677 (+) False fuz
XR_004580282.1 other downstream 148437 18816009 ~ 18871360 (+) True slc44a5a
TU383181 other downstream 1771130 20438702 ~ 20440561 (+) True G323534
XR_004580310.1 other downstream 1970012 20637584 ~ 20659411 (+) False arhgef4
trnap-ugg_22 other downstream 2247832 20915404 ~ 20915475 (+) True trnap-ugg_22
TU383298 other downstream 2353617 21021189 ~ 21136847 (+) True G323615

Expression Profile