RNA id: XM_034314582.1


Basic Information

Item Value
RNA id XM_034314582.1
length 6643
RNA type mRNA
GC content 0.47
exon number 26
gene id cc2d1b
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 20157318 ~ 20180634 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctgaaatcGTTTTGAGGGGCGTGCACAAAAGGAGCTCGAGCGTTCCTGTGTCGACGGTTGAAAACGTCCAATATGTTTACAataATTCGCGTCCTGTTCCACTGCCGAGTCGCAGAATCAGGTAGATTTGAGGGAATTTAAGATGTTTGGCAGGAAAAATAAACGTCCTGCGGCTCCTAAAGGCCAAGGAGCTGCTGCTGCCAAACAGATGGGTTTACTTCTCGACTTTAACCCCGAGGACATGATGGAGGTGAAGGAGAATGTGGATGATCCGGATCTGGAGGCTGAATTCGCTGccattgtggggaaaaaaccaactgctgctgctgctaaagCGAAAAAAAACGCCAAAGCTCCGTTACCAATGGAGGATATCGAAAAGATGACTGAGGCGTGCATGAAAGACCtcgacgatgatgatgacgatgatgaccTCGAGGATGACGAAGATCTCCTGGCGGAGCTACAGGAAGTGGTGGGTGAAGAGGAAACCGATTCTGGGACAGAGACTGGGCCACTGGAGCCAGAACCACAGGAAGTGAAGGTGtcctccaccaccatcaccaccccagcagcagcagcagtatgtGGTAGTGTTGAACACACGCTTCAGGAGAGAATCCTCATGTACAACTCCGCCATAACCAACGCTAAAGCTGCAGGAGAGTCGGCTAAAGCTCGCCGCTACGACAGAGGGCTCAAGACCCTACAGAGCATGCTAGCGTCCGTACGTAAAGGAGGAAAGATAAACGAAGCGGAGATCCCGCCTCCGGTGGCGTCTGGTAACCGTAGCGACGCTGTTCCTCCCCCGGCTCCTCCCACATCCGCCCCGCCTCCACCCGAGCATCACGAAGAGTCGGACAGCGCCGTGGAAACTTCGCCCGTGTCCCCGGAGACCCTCTCTGTGTCCACGCTGCCGGAAGTGAAAGTGTCCTCAGCAGAGACCTCGCCCGTTTCCGTGGAGACCTCGGCTGTTTCTCTGGAGCCGCCAGCCAGCAGTGACGGTCCGTCTCGCGCGATCTCAGCAGGGGAGGAGCGTTTCCCAGAATCCCCTGCAGATGCAAAAGTAAGTGCCCCCAGTAAGGAGACGCTGTTGGAGAGGCAGAAGCAGTACAGGACGGCCGCTCTGAGGGCGAAACAAGCCGGAGATCTGGAACAGGCCAAAACACACATGAAGAGCAGCAAGAGTTTTGATGCTGCGCTCGCGGCGCTGGAGAAAGGAGAGAGCGTGGACTTCCGTAaacttcctcctcctctgtctgAAGGGACGGAAACTTCTCCAAAACCAGCTATAAAGATTTCTCAGTCGTCCCCGAACATGCAGGCACACGACGCGGCAGTGAATCCGCCCGGACCGGTTCCGCCCAAAACCGTACTGGAAGCTCTGGAGCAGAGGATGGCTAAATACAAAGAGACATGCGATCAGGCTAAAGCTAACGGCGACGACCGCAAAGCTCGCATGTACGATCGCATCGTCAAGCAATATCAGAGCGCCATCCGCTCACATAAAGCAGGACGAGCTGTTAATTATGAAGAGCTTCCGATACCGCCAgGTTTTCCACCAATCCCAGGACAGGAGGCGGTTAAACCTGAGCAGGGATTGGCTGCCGCGCTGGAAACAGCCAATAAGCTCGCTTCTAACGAGGCAGAGGGCGGAGacgacgaggaggaggaggaggaagaggaaacggagaaagaaagcaaaaagCCCAAAGCTCCAGCAGCTCcagcagcaccagcagcagTGGAGACGCAGAAGAAGCCGACGATGGCGGTTCCTCCGACAGTCCAGCATCCTAAAAGaactccttcaccttcacctgaGAGAACCACCAAGCAAGAGAACCCGTCTTCCACGGTGACGGAGCAGGTGGAGATGTTGGAGGCTCGGAAGAAGCAGTACATGAAGGCAGCGCTGCAGGCCAAACAGAAGAACGACGTGGAGCAGGCCAAGGTGTATTTACGCACAGCCAAGAGCTTGGAGCCGCTGATTACTGCAGCACGCAGCGGCAAACACGTCGACATCAGCAAGgtccCGTCTCCTCCTGCCGACGAGGACGAGGACTTCATCGTGATCCATCAGAGTGAGGTGGAGCTGTCCGTGAGAGCCGAGGAGGTTTACGCTCAGCTCAGCACCATGCTGAAGGAGCAGTACGAGAAATGTATGACTTACTCCAAGCAGTTTACTCACATGGGGAACATCGCTGAAACCACTaaGTTTGAGAACATGGCGGCGAGATGTAAGAAGAGTCTGGAGATCCTGAAGCTGGCTCAGACCCGAGGCCTGGAGCCTCCTAAGCACCACTTCGAGGAGAGAACGTATCGCACCGTCAGgatATTTCCGGAGCTCAGCAGCACTGATATGGTGGTGATGATCGTTAAAGGAATGAATCTTCCCGCTCCTCACGGTGTCGCGTCGAACGACCTGGATGCTTACGTCAAGTTTGATTTCCCCTACCCCAGCTCGGATCAGCCTCAGAGACACAAAACCGCAGTGATTAAAAACACCAGCAGCCCCGAGTACAACCAGAGCTTCACCTTAAACATAAACCGTAACCACCGCGGCTTGAGGAGAGTGATACAGTCCAAAGGCCTCAAACTGGAAGTGTTTCATAAAGgtGGTTTCCTGAGGAGTGATAAACCTGTAGGAACAGCTCACATTAAACTGGACAAACTGGAGACTGAGAGTGAAGTGCGCGAGATAGTGGAGgTGATGGACGGCCGGAAGCCCACAGGAGGTCGTGTAGAGGTCAGGGTTCGTCTCAGAGAGCCGCTGAGTGGTCAGGACATGCAGACGGTCACTGAGCGCTGGCTGGTGCTGAACCAATCACACATCTGATCTTCACTCTGactgtgatgtcacactccgaCACGCTGCTGTTCCTCGTCCTTCCTTACAGAAGTTGGGAGAAAACGTCACACTTTCACACCAGAATCACATGGAGATCTGCTCACACGTTCGGTCCACCATCaggaggagaaacacacacacacacacacacacacacacacacacatacacaaaaacacagagcttGGGTGATTCCCGTTACACAGTGGGATTAAATGAATAAGTtattacacacgcacacacacacacacacacacacacacatacatacacacacacacacacaaaaacacagagctcGGGTGATTCCCGTTACACAGTGGGATTAAATGAATGttatggcacacacacacacacacacacacacacacacacacacacacacacacacacaaacacacaaaaacacagcttgggTGATTCCTGTTACACAGTGGGATTAAATGAATGTtatggcgcacacacacacacacacacacacacacacacacaaacacagctcgGGTGATTCCCGTTACACAGTGGGATTAAATGAATGTtatggcgcacacacacacacacacacacacacacacacacacacacacacacaaacacagctcgGGTGATTCCCGTTACACAGTGGGATTAAATGAATAAGTtattacacacgcacacacacacacacacacgcacacacacacacacacacacacacacacaaacacagctcgGGTGATTCCCGTTAGACAGTGGGATTAAATGAATAagttattacacacacacacacacacacacacacaaaacacagctcGGGCGATTCCCGTTACACAGTGGGATTAAATGAATAAGTtattacacacgcacacacacacacacacacacacacatacatacacacacacacacacaaaaacacagctcgGGCGATTCCCGTTACACAGTGGGATTAAATGAATAAGTtattacacacgcacacacacacacagacacacacacacacccacccttATGGACTTTTCTGAACTTGTGTGTGAATCTGAAATGCTGTTTGTGATTAAAGTGTGACGTTTAAACCGCACTTATGCACTAATACCAAAGCGATCGTTGTAGCCGGAACACGACGTGGCACGATTGTTTAACCTGCTGTTTTATAGCACAACACTGCTGTAACATTAACGCTGAATTGATTTATCTATGCAAAGTGTTCGTGTCGATTCCCTCAAACGCCTAAATCGTTTTCTAAACACGTTTGTATGTTACAAAGCAGATTTGCTGCACGGAGACACACGGGTTTAACCTCACGTGACACGCCAAAGCCATAATCCGCATTCACGCAAACCGAAACGATTAGAATACGCAaagttattgtgtgtgtttcaatatatatatacatgaaaaCGCTTAAAAGCACTGCTTAAGCTAGCATTTAGTGAGGAAACTCTTCGTCCAGTATCGTTTTTTTTAACGCATCCTTATCCACTTCCACGATTCCAAGCCTTCAGCGTACTTCATCCTGAGACGACGCTCGGTTGACCTCCATGAACAATATGACGGAGCAAACGGACGTCGTGTGGAGATTTCGCTCTCCGTGTCACACACGTCACAGCTGAGAGCACGAACAAACCTACAAACAAGTTCATGCTGCCAGCACTTTGCCCCCAATCTTCTTCCTGTAGTCATGGAAACTGTCGTGAAATTTTAACAGTGCCCCCTGCAGGACTGGAGCACTCGTAAGCGACGGCTCGTACAAAGCCATGGATCTCGCAAATCACTCCCAGGTGTCGTCTTTGCAACAAGTACGCCGAGGCGTTAAGGAACGTACCAGTATTTTAGTTTAAGTTTGTTAGACAGCTGACCGCTGATAGTGCGTTTGTTTTACACTAGTGAAGTTTAAACCGTTGCTCCAATCATAACtcataataaataactaatttgcataaaacgGCGAAAACATTAGCAGTTGAAGCTCTGTGTCACAAACCTACGCAAAAATtgtttgctagtgtgaacggatggttctgtaaggaaatgaggaagttctttgttgttgttttttggagAACTTCTGCAGTTCTTCTGCTCTTCTGTCTCTAAGGATTTTATCTTAAAAGTGCTTTTCTTCATTATCTACAAAAGCTGAATATTTGGAAATCacggtcattttttttttttctaatgtacGGAGCCTACGATTTTTAAACTTGGTGGAAGTGGACGAGGGCGCGTTATAAACGTCAGGACGAGACTCGCACACACTTTTCGGCTGCTCATCTTGCACTTTGACGTCGTTTCGGGGTTGTGGTTCTGTCGCTCTTCAGGCTGTTAGCCAAGTTTACATGTAACGTTCTGCTGCGCAAACCGGACACACTCctacttttattataattattataattattagtgtCCGTATTTTCACTTTAGACAGTATATAATATTGTCCGAGTCTTGCCAAGCTAAGtggttgccatggaaacatACCTTACTTAAAAATAGCTTTCACTCGTCACTGATAAGGgtgtgctgataatcagttataCGATATGTTGCaatatttaacacaatattATCTTGAGCACTTCCAAATCACAGGGTGGAAGCTAAAATTTTGGCTATTGGGAGAAAGTAAATTGTTACGATAAAAAAACGTTCTACGAACAGCAGTGCACGTTACCATGGTAACATTATATAACATGATAAAACGCTAGGTAATGATCGTGAGAGACGTCAACGAGACTGAACTGACATGCTGGAAATTCATATTGTgctaaatttattaataatagatttattaatttatgcttTAGTCTGTAGTTCCACTGAGTTTCGccgaaaaaacaaaaacctaaaaacgaaaaaaaaaaaaataaagaaaaaataaaaacgctCTGTTTGGGCATCAAAAAATGTTGACGCAAAATGTAGCTAACAATTAAAGGTGTGccactcagatttttttttctataaatacacACCCACATCATCTATGTATTGTAAGCAATTTCATTCATCTCTGTAACTACTCTGTCTTTAAATTTTAGGAGGCGGAGCCTAAATGGGGGCGGAGTCAAAGCAGTCAAAGCTGCAGGGAAAAAAGTCGTATAAAATTTCAGCTTCAGCTACACAGTGAACATGTGGGTgtggtttataatttttttttttcgtgtgtgtgtttgtcattaaCCTCGTAACTTCAGTGCAAAAACTACAAACAcgttgactttttatttttttggaataaAGATGGacattttggattatttttgtttctttaaatgcTGATTACACCAAGAGTTCATTTCACTACTTTATTGTTCTTCCATTTCAAAGTTGTATTAATATCTcgagtgtcttttttttttttttttgcttagaaGCGAACTGTGCCATTAATCAGTTATTCAGTGTATCGCAATAATCCTCTGTATTGTCACCCCTTGTTCCAATCAGAAGTAGGCTGCCTAAGTAGGGAGCAATATTTAAGTCCGTCTGAATGATCCCTTACTTTGGACATCACATTTCCATCTCGGGGAAAACAATCCCATAATTCTACTCTAAAAACACTGATATGGGAACTGAATACTGGCACGTACCTGgatcttctacacacacacacacacacacatattgagCTGGAATtaaataactgtgtgtgtgtgtgtgtgtgtgtgtagaaaacaTTGACCTGAGCAGATGAAGATgatgtcctgtttctctgaaAGCTTCATGACTGAAGCTgaaagctggatttttcagtcTGTTGTAGAAAGTTTGTGAATTAAACTTCTTTTAgcattaaagctttaaaagacA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU382947 lncRNA upstream 243303 19847999 ~ 19914015 (+) True G323358
TU382809 lncRNA upstream 496086 19660616 ~ 19661232 (+) True G323249
TU382800 lncRNA upstream 512748 19643823 ~ 19644570 (+) True G323240
TU382760 lncRNA upstream 573995 19582317 ~ 19583323 (+) True G323206
TU382712 lncRNA upstream 634285 19512724 ~ 19523033 (+) True G323168
TU383098 lncRNA downstream 61984 20242618 ~ 20303253 (+) True G323471
TU383113 lncRNA downstream 87077 20267711 ~ 20335698 (+) True G323485
TU383131 lncRNA downstream 138323 20318957 ~ 20393150 (+) True G323499
TU383114 lncRNA downstream 151971 20332605 ~ 20353169 (+) True G323486
TU383134 lncRNA downstream 179333 20359967 ~ 20393712 (+) True G323500
XM_034314586.1 mRNA upstream 6908 20138944 ~ 20150410 (+) True elovl1a
XM_026946357.2 mRNA upstream 7089 20138945 ~ 20150229 (+) False elovl1a
XM_026946175.2 mRNA upstream 94842 20057587 ~ 20062476 (+) True glula
XM_026946140.2 mRNA upstream 796057 19356412 ~ 19361261 (+) True ptger4c
XM_026946130.2 mRNA upstream 841112 19313860 ~ 19316206 (+) True LOC113546339
XM_034314809.1 mRNA downstream 57592 20238226 ~ 20281067 (+) False clcn2a
XM_034314811.1 mRNA downstream 62683 20243317 ~ 20281067 (+) True clcn2a
XM_034314812.1 mRNA downstream 75709 20256343 ~ 20281067 (+) False clcn2a
XM_034297730.1 mRNA downstream 288891 20469525 ~ 20476964 (+) True zgc:110269
XM_034297731.1 mRNA downstream 325050 20505684 ~ 20525922 (+) True lifra
XR_004580282.1 other upstream 1285958 18816009 ~ 18871360 (+) True slc44a5a
TU381842 other upstream 1734687 18415817 ~ 18422631 (+) False pex5lb
TU381774 other upstream 1930085 18226562 ~ 18227233 (+) False si:ch211-162e15.3
TU381775 other upstream 1930182 18226562 ~ 18227136 (+) False si:ch211-162e15.3
XR_003404718.2 other upstream 2525710 17570649 ~ 17631608 (+) False egfra
TU383181 other downstream 258068 20438702 ~ 20440561 (+) True G323534
XR_004580310.1 other downstream 456950 20637584 ~ 20659411 (+) False arhgef4
trnap-ugg_22 other downstream 734770 20915404 ~ 20915475 (+) True trnap-ugg_22
TU383298 other downstream 840555 21021189 ~ 21136847 (+) True G323615
TU383295 other downstream 954485 21135119 ~ 21136847 (+) False G323615

Expression Profile