RNA id: XM_034314595.1


Basic Information

Item Value
RNA id XM_034314595.1
length 1580
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC117599949
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 21183325 ~ 21191170 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgtgtaaggtgcgGGGTCTCGCGCTGCAGCGGTGCTGGTGAGGCTGCAGCTCCATCATGGTGAAGATCAGCTGCGCGGCGATAAACGGCATTAAAGCCGAGAAAGAGGAGCGCGAGGAACCGGAGCGCATCTACATCCCGCCGCAGCACgtggGCGTGTCCCGGCACTCGTCTCTGAGTGGACTCTGCTGTTTACTGATCGCTCTCGTCATCAGCACCTGCAGCCTGGTGTATGCCTCCATCTACATCTACCGCTATTATATCATCCctcaggcggATGAGTCTCAGTTCCGTTGCAATGTGTATTATGAAGACACTCTGAAGGCACCTCAGCATGATCGAGAGGAACTGCAGGAGAATGTCGACATCAACCTGCAGAACAACTACGAGAGAATCAGCGTCAACGCTGGCAACACAAACCCACGGACACGCCCTGCCACCATCATACATGACTTCAACAagggTCTGACTGCATATCATGACATCACTCTGGATAAGTGTTACGTCAGTGTGCTGAACAGCAGCATCGTTCTGCCTCCAAGGAACCTGTGGAAACTCCTCATCAATGTCAAACTGAGAACCGGCaacGAGGCCTCTCTCCCCCAGACGTACATGGTTCAGGAGGAGATGGTGGTGTCTGAGCAGGTGATGAACACACGTGTGTTTGGCGTGTTTATCCACAGACTGTGTGAGGGGAAACCAACCTATCAGATCAGACGCCGCCTCACACGCCGCCGTATCGCCAAGCGGGAGGAGCAGATCTGTCACTCGATCCGACACTTTGAGAACACATTCGTAATGGACACGCTGATTTGTGATGCGCCCTGAATCATAACTTTCACCTCACATCactctcatttcctctcttaatgactagtttatttatttcatgatttaattgatttattgttaaaagtgcttccATTAATCACCCAgtagcactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtatatatatgctaATATTAAAGTCCCATCTTGTGATCATAGACCAGCTATTTCTGGTGTAATATAAAGTATAATCTTGATATAAGAACATGTTCACCTGCACACTGAACCATAAAAATAGGGTTAGCTGGCTAAAAATAACCATGGCaatcattaaaaacacatttaactgTTCCACATGTACAGGGAAGTGTAGTAATGATAGCTTACCATGTGGTGAACAAGAATTTTGCAGTATGTTGTATAATGGATTATTAGCACAGGACCAGTTTATACtctacttttatttctttctgtcccAGACTATGCACTTGTCCACTCCATGTAGCACTTAATAACCTGTAACTGTGTTCATTTATCTGTATCAGAAGTTTGATCGATTGTTATTTCTATAGCTGGAATATCTCGTTAACCTTTACATTGCATGAATCTTTACACATTTGCACATTAAATAGTGAATAATtgaatgtaaattttaaaaatccatttaaatgtGGACTGCGTGACTTTTCAAACTGAACCTTCTCCTAATCTGAGTAATGTAGCTGAACATCTGAGCAAATAAAGAAATtgcacacattaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580331.1 lncRNA downstream 36619 21139370 ~ 21146706 (-) True LOC117599984
XR_004580281.1 lncRNA downstream 193017 20981438 ~ 20990308 (-) True LOC117599936
TU383698 lncRNA downstream 237257 20932834 ~ 20946068 (-) True G323907
TU383817 lncRNA upstream 6920 21198090 ~ 21198331 (-) True G323989
TU383831 lncRNA upstream 31006 21222176 ~ 21222600 (-) True G324001
XM_026911894.2 mRNA downstream 10994 21167393 ~ 21172331 (-) False gpr55a
XM_026911893.2 mRNA downstream 11927 21167393 ~ 21171398 (-) True gpr55a
XM_034314905.1 mRNA downstream 18536 21147881 ~ 21164789 (-) False ngef
XM_034314906.1 mRNA downstream 18697 21147881 ~ 21164628 (-) False ngef
XM_034314904.1 mRNA downstream 18697 21147881 ~ 21164628 (-) True ngef
XM_026911902.2 mRNA upstream 8026 21199196 ~ 21217695 (-) True LOC113525405
XM_034314870.1 mRNA upstream 26653 21217823 ~ 21219726 (-) True LOC117599990
XM_026911904.2 mRNA upstream 32646 21223816 ~ 21224580 (-) False insl3
XM_026911903.2 mRNA upstream 32646 21223816 ~ 21224580 (-) True insl3
XM_026911896.2 mRNA upstream 34624 21225794 ~ 21228030 (-) True si:rp71-39b20.4
TU383786 other downstream 45631 21135134 ~ 21137694 (-) False si:ch1073-429i10.3
TU383785 other downstream 85616 21052207 ~ 21097709 (-) True G323963
TU383705 other downstream 206988 20961573 ~ 20976337 (-) False LOC113524960
TU383704 other downstream 214156 20961426 ~ 20969169 (-) False LOC113524960
TU383689 other downstream 353221 20828026 ~ 20830104 (-) True G323902

Expression Profile